Wall clock time and date at job start Mon Mar 30 2020 07:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.76193 * 126.03754 * 2 1 4 4 C 1.70974 * 90.28329 * 180.02562 * 3 2 1 5 5 C 1.50703 * 124.91905 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.46783 * 269.99484 * 5 4 3 7 7 C 1.46901 * 110.99779 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47317 * 325.00929 * 7 6 5 9 9 C 1.53004 * 109.46776 * 85.00476 * 7 6 5 10 10 C 1.50694 * 109.47300 * 205.00380 * 7 6 5 11 11 H 1.07995 * 119.99960 * 0.02562 * 10 7 6 12 12 C 1.37880 * 120.00143 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99763 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 120.00038 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47348 * 89.99476 * 14 12 10 16 16 H 1.48500 * 109.46708 * 209.99568 * 14 12 10 17 17 H 1.48494 * 109.46785 * 329.98996 * 14 12 10 18 18 N 1.29034 * 110.16586 * 359.97438 * 4 3 2 19 19 C 1.31774 * 117.12480 * 0.02562 * 18 4 3 20 20 C 1.50701 * 122.75190 * 179.97438 * 19 18 4 21 21 C 1.53004 * 109.46595 * 300.02550 * 20 19 18 22 22 C 1.52996 * 109.47108 * 60.01966 * 20 19 18 23 23 H 1.08997 * 109.46962 * 359.97349 * 1 2 3 24 24 H 1.09001 * 109.47112 * 119.97729 * 1 2 3 25 25 H 1.09005 * 109.47346 * 239.97852 * 1 2 3 26 26 H 1.08997 * 109.46951 * 29.99458 * 5 4 3 27 27 H 1.08999 * 109.47340 * 149.99821 * 5 4 3 28 28 H 1.00899 * 110.99612 * 56.04854 * 6 5 4 29 29 H 1.08994 * 109.47003 * 180.02562 * 9 7 6 30 30 H 1.09007 * 109.46962 * 299.99904 * 9 7 6 31 31 H 1.09001 * 109.47023 * 59.99784 * 9 7 6 32 32 H 0.96995 * 119.99822 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.47197 * 180.02562 * 20 19 18 34 34 H 1.08995 * 109.47325 * 60.00107 * 21 20 19 35 35 H 1.09001 * 109.46777 * 179.97438 * 21 20 19 36 36 H 1.09005 * 109.47135 * 299.99531 * 21 20 19 37 37 H 1.08999 * 109.46962 * 60.00723 * 22 20 19 38 38 H 1.09001 * 109.47175 * 180.02562 * 22 20 19 39 39 H 1.08995 * 109.47592 * 300.00371 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5436 1.4248 0.0000 4 6 3.9311 0.4257 -0.0008 5 6 5.3532 0.9245 -0.0006 6 7 5.8151 1.0873 -1.3856 7 6 7.2007 1.5739 -1.4247 8 1 7.3693 2.2573 -0.5925 9 6 8.1609 0.3880 -1.3132 10 6 7.4430 2.2960 -2.7249 11 1 6.6473 2.3850 -3.4496 12 6 8.6807 2.8431 -2.9894 13 7 9.6495 2.7352 -2.1066 14 14 8.9809 3.7389 -4.6009 15 1 8.6556 5.1783 -4.4352 16 1 10.4071 3.5951 -4.9888 17 1 8.1187 3.1551 -5.6597 18 7 3.5844 -0.8171 -0.0004 19 6 2.2932 -1.0807 -0.0001 20 6 1.7479 -2.4855 -0.0003 21 6 2.2359 -3.2218 -1.2496 22 6 2.2356 -3.2221 1.2489 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5135 -0.8902 25 1 -0.3634 -0.5142 0.8898 26 1 5.4015 1.8843 0.5137 27 1 5.9907 0.2046 0.5127 28 1 5.2021 1.7006 -1.9014 29 1 9.1890 0.7490 -1.3417 30 1 7.9856 -0.1344 -0.3726 31 1 7.9922 -0.2956 -2.1453 32 1 10.5201 3.1204 -2.2925 33 1 0.6584 -2.4524 -0.0004 34 1 3.3254 -3.2550 -1.2494 35 1 1.8419 -4.2381 -1.2495 36 1 1.8885 -2.6971 -2.1396 37 1 1.8880 -2.6976 2.1389 38 1 1.8416 -4.2384 1.2486 39 1 3.3251 -3.2552 1.2490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393788248.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:57 Heat of formation + Delta-G solvation = 22.244404 kcal Electronic energy + Delta-G solvation = -18140.790232 eV Core-core repulsion = 15402.378102 eV Total energy + Delta-G solvation = -2738.412130 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.97617 -36.26891 -34.82449 -32.83330 -32.04733 -29.45964 -27.12285 -26.85381 -25.33425 -24.64613 -23.16057 -21.08402 -19.82863 -18.65533 -17.40132 -16.52628 -15.45740 -15.06836 -14.79129 -14.29571 -14.09124 -13.66311 -13.47996 -13.34109 -13.06190 -12.85798 -12.54830 -12.33558 -12.06947 -11.96719 -11.74646 -11.22793 -11.15621 -10.90264 -10.88772 -10.78835 -10.66911 -10.32566 -10.13856 -10.06525 -9.26372 -9.02288 -8.86698 -8.52033 -8.40420 -7.37054 -6.04718 -4.11388 0.89757 1.52917 1.94114 2.99900 3.28824 3.35658 3.39921 4.25551 4.39857 4.77626 4.88073 5.07503 5.15904 5.20718 5.26247 5.36412 5.38402 5.49099 5.61470 5.64801 5.70509 5.82022 5.89634 5.94244 6.03682 6.14535 6.25539 6.31883 6.48611 6.85748 7.13388 7.19472 7.44580 7.75174 7.84824 8.05625 8.23391 8.30539 8.58000 8.97256 9.54530 11.01618 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.004197 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.638824 B = 6670.057914 C = 7024.438042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.240 4.240 3 S 0.099 5.901 4 C 0.078 3.922 5 C 0.133 3.867 6 N -0.677 5.677 7 C 0.213 3.787 8 H 0.004 0.996 9 C -0.124 4.124 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.898 3.102 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 N -0.453 5.453 19 C 0.072 3.928 20 C -0.017 4.017 21 C -0.141 4.141 22 C -0.140 4.140 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.331 0.669 29 H 0.081 0.919 30 H 0.006 0.994 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.325 -6.710 6.215 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.361 4.361 3 S 0.355 5.645 4 C -0.201 4.201 5 C 0.000 4.000 6 N -0.309 5.309 7 C 0.106 3.894 8 H 0.021 0.979 9 C -0.183 4.183 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.725 3.275 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.166 5.166 19 C -0.060 4.060 20 C -0.038 4.038 21 C -0.199 4.199 22 C -0.198 4.198 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.113 0.887 28 H 0.148 0.852 29 H 0.100 0.900 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.646 -6.602 6.180 18.944 hybrid contribution -0.131 0.677 -0.629 0.934 sum -16.776 -5.925 5.551 18.638 Atomic orbital electron populations 1.20143 0.87336 1.02665 1.02580 1.25605 1.01051 0.94755 1.14696 1.83956 0.99526 1.11832 1.69138 1.27164 1.00660 0.90738 1.01515 1.20550 0.86181 0.99045 0.94232 1.60779 1.06115 1.55677 1.08373 1.19156 0.81822 0.91962 0.96456 0.97858 1.21716 1.02599 0.97334 0.96636 1.21220 0.97488 1.34410 1.02658 0.92176 1.24905 0.95938 0.96079 0.96967 1.69895 1.03066 1.45071 1.34725 0.86505 0.77448 0.79821 0.83696 1.20726 1.21156 1.19830 1.66028 1.16534 1.18697 1.15375 1.20096 0.87484 0.96318 1.02124 1.19712 0.98989 0.88400 0.96720 1.21771 1.02756 0.99043 0.96304 1.21765 1.02560 0.99167 0.96288 0.91509 0.90740 0.90820 0.93954 0.88691 0.85163 0.90000 0.97536 0.94829 0.92863 0.90207 0.91387 0.92529 0.92899 0.93085 0.92464 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 9.23 36.01 0.33 -0.29 16 2 C -0.24 -3.14 6.59 -35.92 -0.24 -3.37 16 3 S 0.10 1.41 23.18 -107.50 -2.49 -1.08 16 4 C 0.08 1.34 6.90 -13.45 -0.09 1.25 16 5 C 0.13 2.49 6.06 -4.97 -0.03 2.46 16 6 N -0.68 -14.83 6.29 -109.22 -0.69 -15.51 16 7 C 0.21 5.41 2.60 -68.86 -0.18 5.23 16 8 H 0.00 0.10 7.80 -51.93 -0.40 -0.30 16 9 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 10 C -0.52 -14.23 8.59 -34.44 -0.30 -14.53 16 11 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 12 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 13 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 14 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 N -0.45 -7.80 10.43 -8.06 -0.08 -7.89 16 19 C 0.07 1.04 5.31 -84.23 -0.45 0.60 16 20 C -0.02 -0.20 3.20 -91.77 -0.29 -0.49 16 21 C -0.14 -1.64 9.14 37.16 0.34 -1.30 16 22 C -0.14 -1.51 9.14 37.16 0.34 -1.17 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 27 H 0.10 1.84 7.44 -51.93 -0.39 1.45 16 28 H 0.33 7.10 8.21 -39.29 -0.32 6.78 16 29 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 30 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.08 0.75 7.02 -51.93 -0.36 0.39 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -29.28 332.74 -9.32 -38.60 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.36 Total: 2.07 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.32 Total: -12.77 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.14 Total: -48.04 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.49 Total: -1.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.28 -9.32 -38.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788248.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.846 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds