Wall clock time and date at job start Mon Mar 30 2020 07:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.76193 * 126.03754 * 2 1 4 4 C 1.70974 * 90.28329 * 180.02562 * 3 2 1 5 5 C 1.50703 * 124.91905 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.46783 * 269.99484 * 5 4 3 7 7 C 1.46901 * 110.99779 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47317 * 325.00929 * 7 6 5 9 9 C 1.53004 * 109.46776 * 85.00476 * 7 6 5 10 10 C 1.50694 * 109.47300 * 205.00380 * 7 6 5 11 11 H 1.07995 * 119.99960 * 0.02562 * 10 7 6 12 12 C 1.37880 * 120.00143 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99763 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 120.00038 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47348 * 89.99476 * 14 12 10 16 16 H 1.48500 * 109.46708 * 209.99568 * 14 12 10 17 17 H 1.48494 * 109.46785 * 329.98996 * 14 12 10 18 18 N 1.29034 * 110.16586 * 359.97438 * 4 3 2 19 19 C 1.31774 * 117.12480 * 0.02562 * 18 4 3 20 20 C 1.50701 * 122.75190 * 179.97438 * 19 18 4 21 21 C 1.53004 * 109.46595 * 300.02550 * 20 19 18 22 22 C 1.52996 * 109.47108 * 60.01966 * 20 19 18 23 23 H 1.08997 * 109.46962 * 359.97349 * 1 2 3 24 24 H 1.09001 * 109.47112 * 119.97729 * 1 2 3 25 25 H 1.09005 * 109.47346 * 239.97852 * 1 2 3 26 26 H 1.08997 * 109.46951 * 29.99458 * 5 4 3 27 27 H 1.08999 * 109.47340 * 149.99821 * 5 4 3 28 28 H 1.00899 * 110.99612 * 56.04854 * 6 5 4 29 29 H 1.08994 * 109.47003 * 180.02562 * 9 7 6 30 30 H 1.09007 * 109.46962 * 299.99904 * 9 7 6 31 31 H 1.09001 * 109.47023 * 59.99784 * 9 7 6 32 32 H 0.96995 * 119.99822 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.47197 * 180.02562 * 20 19 18 34 34 H 1.08995 * 109.47325 * 60.00107 * 21 20 19 35 35 H 1.09001 * 109.46777 * 179.97438 * 21 20 19 36 36 H 1.09005 * 109.47135 * 299.99531 * 21 20 19 37 37 H 1.08999 * 109.46962 * 60.00723 * 22 20 19 38 38 H 1.09001 * 109.47175 * 180.02562 * 22 20 19 39 39 H 1.08995 * 109.47592 * 300.00371 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5436 1.4248 0.0000 4 6 3.9311 0.4257 -0.0008 5 6 5.3532 0.9245 -0.0006 6 7 5.8151 1.0873 -1.3856 7 6 7.2007 1.5739 -1.4247 8 1 7.3693 2.2573 -0.5925 9 6 8.1609 0.3880 -1.3132 10 6 7.4430 2.2960 -2.7249 11 1 6.6473 2.3850 -3.4496 12 6 8.6807 2.8431 -2.9894 13 7 9.6495 2.7352 -2.1066 14 14 8.9809 3.7389 -4.6009 15 1 8.6556 5.1783 -4.4352 16 1 10.4071 3.5951 -4.9888 17 1 8.1187 3.1551 -5.6597 18 7 3.5844 -0.8171 -0.0004 19 6 2.2932 -1.0807 -0.0001 20 6 1.7479 -2.4855 -0.0003 21 6 2.2359 -3.2218 -1.2496 22 6 2.2356 -3.2221 1.2489 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5135 -0.8902 25 1 -0.3634 -0.5142 0.8898 26 1 5.4015 1.8843 0.5137 27 1 5.9907 0.2046 0.5127 28 1 5.2021 1.7006 -1.9014 29 1 9.1890 0.7490 -1.3417 30 1 7.9856 -0.1344 -0.3726 31 1 7.9922 -0.2956 -2.1453 32 1 10.5201 3.1204 -2.2925 33 1 0.6584 -2.4524 -0.0004 34 1 3.3254 -3.2550 -1.2494 35 1 1.8419 -4.2381 -1.2495 36 1 1.8885 -2.6971 -2.1396 37 1 1.8880 -2.6976 2.1389 38 1 1.8416 -4.2384 1.2486 39 1 3.3251 -3.2552 1.2490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393788248.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:57 Heat of formation + Delta-G solvation = 4.179128 kcal Electronic energy + Delta-G solvation = -18141.573601 eV Core-core repulsion = 15402.378102 eV Total energy + Delta-G solvation = -2739.195499 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.10092 -37.98423 -36.01098 -34.56987 -33.18841 -31.19801 -28.30972 -27.99586 -27.28956 -25.99674 -24.29547 -22.28927 -21.76947 -19.79982 -18.77257 -18.21457 -16.97830 -16.49662 -16.14319 -15.93324 -15.28199 -15.01549 -14.93808 -14.52139 -14.12459 -13.83142 -13.82957 -13.59665 -13.45969 -13.07011 -12.94655 -12.87775 -12.74111 -12.67528 -12.31859 -12.21374 -12.07389 -11.96608 -11.77942 -11.62192 -10.95055 -10.59489 -10.46627 -10.13731 -9.55015 -9.16178 -8.14914 -6.29370 -0.25802 0.40713 0.79626 1.41996 1.43573 1.54171 1.84085 2.41111 3.09592 3.13986 3.65611 3.86346 3.96081 4.09889 4.24712 4.28995 4.43570 4.49927 4.59241 4.75115 4.77850 4.81185 4.82450 4.98493 4.99354 5.04585 5.05615 5.15840 5.16124 5.35501 5.37525 5.40864 5.50848 5.63210 5.79722 6.17539 6.36080 6.65181 6.90282 6.91794 7.40725 8.90979 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.004197 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.638824 B = 6670.057914 C = 7024.438042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.222 4.222 3 S 0.125 5.875 4 C 0.039 3.961 5 C 0.140 3.860 6 N -0.678 5.678 7 C 0.218 3.782 8 H -0.021 1.021 9 C -0.113 4.113 10 C -0.539 4.539 11 H 0.058 0.942 12 C 0.016 3.984 13 N -0.916 5.916 14 Si 0.964 3.036 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.270 1.270 18 N -0.473 5.473 19 C 0.045 3.955 20 C -0.016 4.016 21 C -0.138 4.138 22 C -0.136 4.136 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.333 0.667 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.110 0.890 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.009 -6.904 5.859 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.343 4.343 3 S 0.381 5.619 4 C -0.239 4.239 5 C 0.008 3.992 6 N -0.311 5.311 7 C 0.110 3.890 8 H -0.003 1.003 9 C -0.171 4.171 10 C -0.577 4.577 11 H 0.076 0.924 12 C -0.184 4.184 13 N -0.555 5.555 14 Si 0.789 3.211 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.195 1.195 18 N -0.188 5.188 19 C -0.086 4.086 20 C -0.037 4.037 21 C -0.195 4.195 22 C -0.194 4.194 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.150 0.850 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.337 -6.802 5.834 21.313 hybrid contribution 0.590 0.703 -0.464 1.028 sum -18.748 -6.100 5.369 20.433 Atomic orbital electron populations 1.20375 0.84094 1.04124 1.04402 1.26232 1.02972 0.93521 1.11616 1.83771 0.98164 1.11715 1.68281 1.26694 1.00664 0.91720 1.04834 1.20354 0.87679 0.99023 0.92182 1.60641 1.04624 1.55142 1.10659 1.18950 0.83808 0.91303 0.94946 1.00307 1.21545 1.01405 0.97163 0.96988 1.21514 0.97800 1.35048 1.03382 0.92353 1.25712 0.95641 0.96745 1.00258 1.70014 1.03413 1.45665 1.36405 0.85468 0.77299 0.78780 0.79544 1.19852 1.20776 1.19458 1.65991 1.18643 1.19128 1.15029 1.20564 0.86662 0.98187 1.03230 1.19868 1.00525 0.86684 0.96602 1.21739 1.00773 1.00638 0.96387 1.21729 1.00842 1.00603 0.96192 0.90335 0.89008 0.88581 0.93383 0.90052 0.84986 0.92046 0.96095 0.95671 0.92700 0.87154 0.94479 0.89960 0.93384 0.92776 0.90069 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 9.23 71.24 0.66 -0.34 16 2 C -0.22 -5.26 6.59 24.64 0.16 -5.10 16 3 S 0.12 3.40 23.18 -56.49 -1.31 2.09 16 4 C 0.04 1.34 6.90 88.52 0.61 1.95 16 5 C 0.14 5.44 6.06 85.56 0.52 5.95 16 6 N -0.68 -30.54 6.29 -499.46 -3.14 -33.68 16 7 C 0.22 11.39 2.60 44.17 0.11 11.51 16 8 H -0.02 -1.16 7.80 -2.39 -0.02 -1.18 16 9 C -0.11 -5.85 9.19 71.98 0.66 -5.19 16 10 C -0.54 -30.02 8.59 25.60 0.22 -29.80 16 11 H 0.06 3.19 7.62 -2.91 -0.02 3.17 16 12 C 0.02 0.89 5.30 84.66 0.45 1.34 16 13 N -0.92 -52.87 11.32 21.45 0.24 -52.63 16 14 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 N -0.47 -16.40 10.43 -179.40 -1.87 -18.27 16 19 C 0.05 1.24 5.31 41.52 0.22 1.46 16 20 C -0.02 -0.33 3.20 -11.54 -0.04 -0.37 16 21 C -0.14 -3.02 9.14 71.98 0.66 -2.36 16 22 C -0.14 -2.69 9.14 71.98 0.66 -2.04 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.05 1.78 8.05 -2.39 -0.02 1.76 16 27 H 0.08 3.30 7.44 -2.39 -0.02 3.29 16 28 H 0.33 14.59 8.21 -89.69 -0.74 13.85 16 29 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 30 H 0.02 0.97 7.45 -2.38 -0.02 0.95 16 31 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.11 1.61 7.02 -2.39 -0.02 1.60 16 34 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -63.98 332.74 1.13 -62.85 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.29 Total: 16.95 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.89 Total: -22.97 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -4.77 Total: -104.58 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.31 Total: 2.09 kcal Total: -63.98 1.13 -62.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788248.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.028 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds