Wall clock time and date at job start Mon Mar 30 2020 07:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 N 1.46904 * 109.46672 * 269.99569 * 6 5 4 8 8 C 1.46898 * 111.00096 * 293.95023 * 7 6 5 9 9 C 1.46901 * 110.99669 * 169.99850 * 7 6 5 10 10 C 1.53004 * 109.47289 * 190.00355 * 9 7 6 11 11 C 1.52998 * 109.47266 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47271 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99482 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99839 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00462 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99538 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47186 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47212 * 119.99910 * 17 15 13 20 20 H 1.48504 * 109.47011 * 239.99654 * 17 15 13 21 21 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 22 22 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 25 25 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 26 26 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 27 27 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 28 28 H 1.08999 * 109.46988 * 60.00424 * 8 7 6 29 29 H 1.08997 * 109.46927 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47069 * 300.00089 * 8 7 6 31 31 H 1.09004 * 109.46900 * 309.99888 * 9 7 6 32 32 H 1.09002 * 109.47311 * 69.99669 * 9 7 6 33 33 H 1.09007 * 109.46134 * 299.99984 * 10 9 7 34 34 H 1.08998 * 109.47030 * 59.99432 * 10 9 7 35 35 H 1.08997 * 109.47084 * 299.99733 * 11 10 9 36 36 H 1.08999 * 109.46936 * 59.99466 * 11 10 9 37 37 H 1.08997 * 109.47398 * 300.00040 * 12 11 10 38 38 H 1.09007 * 109.47096 * 60.00377 * 12 11 10 39 39 H 0.97005 * 120.00374 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 7 4.8002 -2.4922 -1.4014 8 6 3.6198 -3.0378 -2.0847 9 6 5.9228 -3.4382 -1.4535 10 6 6.3849 -3.6020 -2.9029 11 6 7.5537 -4.5877 -2.9573 12 6 8.0152 -4.7520 -4.4068 13 6 9.1669 -5.7225 -4.4603 14 1 9.5328 -6.1770 -3.5514 15 6 9.7535 -6.0301 -5.6696 16 7 9.3076 -5.4771 -6.7763 17 14 11.1806 -7.2336 -5.7360 18 1 11.4889 -7.7121 -4.3644 19 1 10.8139 -8.3895 -6.5933 20 1 12.3739 -6.5556 -6.3032 21 7 2.2199 -1.1083 -0.0064 22 1 -0.3633 -0.0052 1.0277 23 1 -0.3633 -0.8874 -0.5184 24 1 -0.3633 0.8926 -0.5093 25 1 1.8392 2.1308 0.0005 26 1 5.3966 -1.8274 0.5002 27 1 4.0439 -2.9843 0.4958 28 1 2.8266 -2.2902 -2.0925 29 1 3.8823 -3.3002 -3.1096 30 1 3.2749 -3.9282 -1.5591 31 1 6.7471 -3.0574 -0.8503 32 1 5.6026 -4.4041 -1.0628 33 1 5.5605 -3.9827 -3.5061 34 1 6.7051 -2.6361 -3.2936 35 1 8.3780 -4.2075 -2.3541 36 1 7.2329 -5.5535 -2.5668 37 1 7.1907 -5.1324 -5.0097 38 1 8.3359 -3.7863 -4.7976 39 1 9.7201 -5.6938 -7.6271 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395336148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:10 Heat of formation + Delta-G solvation = 27.194225 kcal Electronic energy + Delta-G solvation = -17425.940657 eV Core-core repulsion = 14687.743167 eV Total energy + Delta-G solvation = -2738.197490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.11902 -37.78223 -34.50195 -32.73724 -31.83899 -29.11018 -28.14151 -27.73214 -25.82669 -23.88007 -22.09326 -20.69682 -20.03837 -19.80280 -17.77879 -16.20893 -16.01106 -15.62117 -15.44666 -14.74897 -14.41392 -14.25854 -14.11173 -13.52236 -13.04779 -12.73820 -12.62524 -12.50930 -12.28775 -11.95694 -11.66563 -11.51749 -11.47423 -11.37354 -10.96668 -10.49561 -10.45529 -10.34627 -9.82133 -9.58743 -9.57864 -9.25210 -8.99623 -8.88287 -8.37072 -8.30942 -5.95982 -3.98077 0.51312 1.22038 1.61823 2.55332 3.33067 3.40351 3.44572 3.73489 4.11833 4.49282 4.66415 4.90558 5.01853 5.03066 5.22620 5.29720 5.31475 5.39664 5.43065 5.45680 5.62622 5.65730 5.72307 5.88863 5.99839 6.07296 6.17729 6.23753 6.53323 6.82059 6.95616 7.00411 7.04961 7.24510 7.57956 7.73634 7.89387 8.05385 8.48114 9.09769 9.65782 11.15420 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.048170 B = 0.002684 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.129397 B =10430.557111 C =10526.450395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.066 3.934 3 C -0.274 4.274 4 S 0.145 5.855 5 C 0.066 3.934 6 C 0.126 3.874 7 N -0.537 5.537 8 C 0.023 3.977 9 C 0.057 3.943 10 C -0.113 4.113 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.473 5.473 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.174 0.826 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.762 13.032 15.846 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.413 4.413 4 S 0.400 5.600 5 C -0.212 4.212 6 C -0.005 4.005 7 N -0.262 5.262 8 C -0.125 4.125 9 C -0.070 4.070 10 C -0.151 4.151 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 N -0.189 5.189 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.191 0.809 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.836 13.475 15.425 25.291 hybrid contribution -0.397 -1.290 0.205 1.365 sum -15.233 12.185 15.631 24.996 Atomic orbital electron populations 1.20345 0.87277 1.03312 1.02782 1.20288 0.98194 0.86600 1.01598 1.26842 0.95721 1.03894 1.14870 1.84053 1.06580 1.02663 1.66691 1.26875 0.93716 0.98452 1.02188 1.20647 0.95250 0.92848 0.91738 1.62043 1.07560 1.43948 1.12672 1.22448 0.92151 0.98321 0.99552 1.22287 0.92055 0.93004 0.99660 1.21682 0.99017 1.00807 0.93634 1.21595 0.95348 0.96659 1.01088 1.19093 0.95870 0.96854 0.89810 1.21327 1.15977 1.25442 0.92957 0.92721 1.25036 0.97292 0.96408 0.95849 1.69977 1.41776 1.43745 0.98075 0.86563 0.82491 0.81082 0.78016 1.19772 1.21056 1.21035 1.66158 1.04585 1.31670 1.16464 0.90798 0.90607 0.90822 0.80854 0.88594 0.91736 0.91536 0.90559 0.95419 0.90778 0.94673 0.92436 0.91608 0.93418 0.93656 0.96743 0.96599 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.31 36.01 0.37 -0.21 16 2 C 0.07 0.69 6.74 -84.22 -0.57 0.12 16 3 C -0.27 -2.52 11.13 29.12 0.32 -2.20 16 4 S 0.14 1.44 23.18 -107.50 -2.49 -1.05 16 5 C 0.07 0.77 6.04 -13.46 -0.08 0.69 16 6 C 0.13 1.43 5.54 -4.97 -0.03 1.40 16 7 N -0.54 -7.13 4.75 -244.36 -1.16 -8.29 16 8 C 0.02 0.31 9.16 60.06 0.55 0.86 16 9 C 0.06 0.80 4.96 -3.82 -0.02 0.78 16 10 C -0.11 -1.95 5.15 -26.73 -0.14 -2.09 16 11 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 14 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 N -0.47 -5.87 9.75 -8.06 -0.08 -5.95 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 25 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 26 H 0.10 0.92 7.93 -51.93 -0.41 0.51 16 27 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.07 0.90 6.70 -51.93 -0.35 0.56 16 29 H 0.08 1.05 6.30 -51.93 -0.33 0.73 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 32 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.06 1.00 6.47 -51.92 -0.34 0.67 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -31.68 334.49 -9.70 -41.37 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -6.45 Total: -4.99 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -0.28 Total: -16.37 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.50 Total: -40.92 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.49 Total: -1.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.68 -9.70 -41.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395336148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.567 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds