Wall clock time and date at job start Mon Mar 30 2020 07:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 N 1.46904 * 109.46672 * 269.99569 * 6 5 4 8 8 C 1.46898 * 111.00096 * 293.95023 * 7 6 5 9 9 C 1.46901 * 110.99669 * 169.99850 * 7 6 5 10 10 C 1.53004 * 109.47289 * 190.00355 * 9 7 6 11 11 C 1.52998 * 109.47266 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47271 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99482 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99839 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00462 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99538 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47186 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47212 * 119.99910 * 17 15 13 20 20 H 1.48504 * 109.47011 * 239.99654 * 17 15 13 21 21 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 22 22 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 25 25 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 26 26 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 27 27 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 28 28 H 1.08999 * 109.46988 * 60.00424 * 8 7 6 29 29 H 1.08997 * 109.46927 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47069 * 300.00089 * 8 7 6 31 31 H 1.09004 * 109.46900 * 309.99888 * 9 7 6 32 32 H 1.09002 * 109.47311 * 69.99669 * 9 7 6 33 33 H 1.09007 * 109.46134 * 299.99984 * 10 9 7 34 34 H 1.08998 * 109.47030 * 59.99432 * 10 9 7 35 35 H 1.08997 * 109.47084 * 299.99733 * 11 10 9 36 36 H 1.08999 * 109.46936 * 59.99466 * 11 10 9 37 37 H 1.08997 * 109.47398 * 300.00040 * 12 11 10 38 38 H 1.09007 * 109.47096 * 60.00377 * 12 11 10 39 39 H 0.97005 * 120.00374 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 7 4.8002 -2.4922 -1.4014 8 6 3.6198 -3.0378 -2.0847 9 6 5.9228 -3.4382 -1.4535 10 6 6.3849 -3.6020 -2.9029 11 6 7.5537 -4.5877 -2.9573 12 6 8.0152 -4.7520 -4.4068 13 6 9.1669 -5.7225 -4.4603 14 1 9.5328 -6.1770 -3.5514 15 6 9.7535 -6.0301 -5.6696 16 7 9.3076 -5.4771 -6.7763 17 14 11.1806 -7.2336 -5.7360 18 1 11.4889 -7.7121 -4.3644 19 1 10.8139 -8.3895 -6.5933 20 1 12.3739 -6.5556 -6.3032 21 7 2.2199 -1.1083 -0.0064 22 1 -0.3633 -0.0052 1.0277 23 1 -0.3633 -0.8874 -0.5184 24 1 -0.3633 0.8926 -0.5093 25 1 1.8392 2.1308 0.0005 26 1 5.3966 -1.8274 0.5002 27 1 4.0439 -2.9843 0.4958 28 1 2.8266 -2.2902 -2.0925 29 1 3.8823 -3.3002 -3.1096 30 1 3.2749 -3.9282 -1.5591 31 1 6.7471 -3.0574 -0.8503 32 1 5.6026 -4.4041 -1.0628 33 1 5.5605 -3.9827 -3.5061 34 1 6.7051 -2.6361 -3.2936 35 1 8.3780 -4.2075 -2.3541 36 1 7.2329 -5.5535 -2.5668 37 1 7.1907 -5.1324 -5.0097 38 1 8.3359 -3.7863 -4.7976 39 1 9.7201 -5.6938 -7.6271 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395336148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:09 Heat of formation + Delta-G solvation = 7.576133 kcal Electronic energy + Delta-G solvation = -17426.791361 eV Core-core repulsion = 14687.743167 eV Total energy + Delta-G solvation = -2739.048194 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91040 -38.86400 -36.24097 -34.36817 -33.03367 -30.54718 -29.23280 -28.45587 -27.32264 -25.38327 -23.28719 -22.03195 -21.58134 -20.62086 -18.57857 -18.38663 -17.04957 -16.63361 -16.50180 -16.39321 -15.80580 -15.30277 -15.07878 -14.48716 -14.38666 -13.92125 -13.83660 -13.56149 -13.34810 -13.30064 -13.07249 -12.86045 -12.70631 -12.65749 -12.27813 -12.17868 -12.16716 -11.94633 -11.31496 -11.25738 -11.01997 -10.62328 -10.54954 -10.35512 -9.66346 -9.38781 -8.18949 -6.30246 -0.26499 0.46740 0.85596 1.40331 1.40698 1.54241 1.76553 2.41660 2.85680 3.13966 3.22606 3.85661 4.02412 4.17054 4.24731 4.30783 4.36637 4.45001 4.54809 4.56906 4.58836 4.69483 4.77343 4.84802 4.86910 4.88132 4.98413 5.06385 5.23571 5.29943 5.37224 5.39180 5.57406 5.79462 5.88357 5.94477 5.99993 6.27264 6.80541 6.87980 7.39183 8.93236 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.048170 B = 0.002684 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.129397 B =10430.557111 C =10526.450395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.042 3.958 3 C -0.266 4.266 4 S 0.157 5.843 5 C 0.043 3.957 6 C 0.128 3.872 7 N -0.545 5.545 8 C 0.030 3.970 9 C 0.067 3.933 10 C -0.104 4.104 11 C -0.095 4.095 12 C 0.022 3.978 13 C -0.542 4.542 14 H 0.061 0.939 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.278 1.278 21 N -0.495 5.495 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.202 0.798 26 H 0.114 0.886 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.050 0.950 37 H -0.013 1.013 38 H -0.011 1.011 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 13.346 17.360 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.405 4.405 4 S 0.412 5.588 5 C -0.234 4.234 6 C -0.002 4.002 7 N -0.270 5.270 8 C -0.118 4.118 9 C -0.060 4.060 10 C -0.142 4.142 11 C -0.134 4.134 12 C -0.015 4.015 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.203 1.203 21 N -0.212 5.212 22 H 0.102 0.898 23 H 0.085 0.915 24 H 0.112 0.888 25 H 0.219 0.781 26 H 0.132 0.868 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.005 0.995 38 H 0.007 0.993 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.672 13.791 16.958 26.326 hybrid contribution -0.504 -1.307 -0.285 1.430 sum -15.175 12.484 16.673 25.771 Atomic orbital electron populations 1.20417 0.85511 1.03890 1.03618 1.20763 0.99538 0.86526 1.02155 1.27220 0.95119 1.04935 1.13228 1.83958 1.07220 1.01464 1.66144 1.26923 0.93776 0.99372 1.03377 1.20690 0.96145 0.93015 0.90391 1.61961 1.07245 1.43563 1.14251 1.22338 0.92152 0.98256 0.99042 1.22094 0.92917 0.93815 0.97159 1.21499 0.97419 0.99122 0.96133 1.21388 0.96838 0.98035 0.97096 1.19027 0.94553 0.94834 0.93075 1.21781 1.16763 1.25974 0.93435 0.92060 1.26031 1.00370 0.98380 0.95396 1.70115 1.43413 1.45298 0.98814 0.85383 0.78556 0.78396 0.78608 1.18426 1.20423 1.20345 1.66170 1.05140 1.33051 1.16860 0.89773 0.91478 0.88809 0.78105 0.86797 0.91662 0.92001 0.91618 0.95152 0.89191 0.94014 0.93181 0.92594 0.92593 0.93102 0.99459 0.99259 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.31 71.24 0.73 -0.27 16 2 C 0.04 0.82 6.74 41.52 0.28 1.10 16 3 C -0.27 -4.36 11.13 66.78 0.74 -3.62 16 4 S 0.16 2.90 23.18 -56.49 -1.31 1.59 16 5 C 0.04 0.97 6.04 88.52 0.53 1.50 16 6 C 0.13 2.72 5.54 85.56 0.47 3.20 16 7 N -0.55 -13.91 4.75 -927.03 -4.41 -18.32 16 8 C 0.03 0.80 9.16 127.69 1.17 1.97 16 9 C 0.07 1.78 4.96 86.30 0.43 2.21 16 10 C -0.10 -3.54 5.15 30.60 0.16 -3.39 16 11 C -0.10 -3.91 5.15 30.59 0.16 -3.75 16 12 C 0.02 1.20 4.97 29.85 0.15 1.35 16 13 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 16 N -0.94 -58.25 13.29 21.44 0.28 -57.97 16 17 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 N -0.50 -11.91 9.75 -179.40 -1.75 -13.66 16 22 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.09 0.83 8.12 -2.38 -0.02 0.81 16 25 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 26 H 0.11 1.95 7.93 -2.39 -0.02 1.94 16 27 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 28 H 0.06 1.68 6.70 -2.39 -0.02 1.67 16 29 H 0.07 1.84 6.30 -2.39 -0.02 1.82 16 30 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 2.12 7.93 -2.38 -0.02 2.10 16 32 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 33 H 0.05 1.77 6.47 -2.38 -0.02 1.75 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 39 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -68.31 334.49 1.38 -66.93 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.01 Total: 5.23 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 5.52 Total: -30.69 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -5.87 Total: -89.94 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.31 Total: 1.59 kcal Total: -68.31 1.38 -66.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395336148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.508 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds