Wall clock time and date at job start Mon Mar 30 2020 07:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09002 * 109.46673 * 195.04264 * 6 5 4 8 8 C 1.52994 * 109.46883 * 75.04566 * 6 5 4 9 9 N 1.46902 * 109.47240 * 315.03890 * 6 5 4 10 10 C 1.46893 * 110.99688 * 205.00324 * 9 6 5 11 11 C 1.53003 * 109.47026 * 180.02562 * 10 9 6 12 12 C 1.52999 * 109.47611 * 179.97438 * 11 10 9 13 13 C 1.52989 * 109.47630 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47389 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99897 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99741 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00489 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99783 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47109 * 59.99561 * 18 16 14 20 20 H 1.48495 * 109.47291 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46701 * 299.99769 * 18 16 14 22 22 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 26 26 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.46855 * 299.98985 * 8 6 5 28 28 H 1.08992 * 109.48027 * 59.99830 * 8 6 5 29 29 H 1.09013 * 109.46668 * 180.02562 * 8 6 5 30 30 H 1.00898 * 110.99959 * 328.95865 * 9 6 5 31 31 H 1.09002 * 109.47586 * 300.00093 * 10 9 6 32 32 H 1.08999 * 109.47511 * 60.00259 * 10 9 6 33 33 H 1.08999 * 109.47294 * 299.99736 * 11 10 9 34 34 H 1.08999 * 109.46961 * 59.99681 * 11 10 9 35 35 H 1.09007 * 109.46956 * 300.00242 * 12 11 10 36 36 H 1.09005 * 109.46790 * 59.99288 * 12 11 10 37 37 H 1.08999 * 109.47341 * 299.99870 * 13 12 11 38 38 H 1.09008 * 109.47058 * 59.99823 * 13 12 11 39 39 H 0.97001 * 119.99711 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3674 -1.9799 -0.2780 8 6 5.9584 -0.7493 1.3884 9 7 6.1391 -0.1567 -0.9809 10 6 7.2937 -0.9320 -1.4537 11 6 8.0863 -0.1011 -2.4648 12 6 9.2894 -0.9082 -2.9569 13 6 10.0816 -0.0776 -3.9684 14 6 11.2669 -0.8724 -4.4526 15 1 11.4379 -1.8703 -4.0767 16 6 12.1331 -0.3255 -5.3754 17 7 11.9247 0.8895 -5.8336 18 14 13.6020 -1.3110 -5.9761 19 1 13.1283 -2.5600 -6.6247 20 1 14.3716 -0.5043 -6.9569 21 1 14.4741 -1.6518 -4.8234 22 16 2.5436 -1.4248 -0.0077 23 1 -0.3633 -0.0055 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5091 26 1 1.9025 2.0874 -0.0004 27 1 5.9443 0.3061 1.6606 28 1 5.3755 -1.3190 2.1120 29 1 6.9873 -1.1096 1.3858 30 1 5.5636 0.1426 -1.7537 31 1 7.9343 -1.1822 -0.6080 32 1 6.9457 -1.8487 -1.9296 33 1 7.4461 0.1494 -3.3106 34 1 8.4344 0.8155 -1.9886 35 1 9.9296 -1.1584 -2.1108 36 1 8.9416 -1.8251 -3.4329 37 1 9.4412 0.1722 -4.8144 38 1 10.4293 0.8394 -3.4927 39 1 12.5343 1.2743 -6.4825 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395369240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:41 Heat of formation + Delta-G solvation = 16.180780 kcal Electronic energy + Delta-G solvation = -17234.873985 eV Core-core repulsion = 14496.198917 eV Total energy + Delta-G solvation = -2738.675068 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05717 -37.24995 -34.67405 -33.02008 -32.17806 -30.42650 -27.66713 -27.24749 -24.90585 -24.18398 -22.20653 -21.32603 -20.06692 -19.03368 -18.32805 -16.31250 -15.99073 -15.49851 -15.21886 -14.73762 -14.55113 -14.37729 -13.93297 -13.42917 -13.27024 -13.03936 -12.81399 -12.46347 -12.26596 -12.12448 -11.62290 -11.49775 -11.47352 -11.30866 -10.93753 -10.51196 -10.50030 -10.38744 -9.77931 -9.58779 -9.48852 -9.23605 -9.05757 -8.94994 -8.40773 -8.29056 -5.94349 -3.96651 0.41230 1.02505 1.45678 2.61296 3.36321 3.40477 3.42984 3.84783 4.16082 4.50452 4.57579 4.66692 4.77908 5.03896 5.07157 5.12149 5.36621 5.40463 5.42451 5.49801 5.55496 5.58182 5.72839 5.92123 5.92879 6.14901 6.20868 6.27922 6.54986 6.86376 6.97129 7.04442 7.25046 7.38617 7.56634 7.74618 7.91095 8.06958 8.49435 9.10753 9.66920 11.16968 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043595 B = 0.002599 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.117671 B =10771.493393 C =10948.289563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.226 4.226 3 C 0.033 3.967 4 N -0.446 5.446 5 C 0.045 3.955 6 C 0.164 3.836 7 H 0.061 0.939 8 C -0.134 4.134 9 N -0.670 5.670 10 C 0.058 3.942 11 C -0.115 4.115 12 C -0.108 4.108 13 C 0.021 3.979 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 S 0.110 5.890 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.175 0.825 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.345 0.655 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.518 -4.107 14.375 27.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.348 4.348 3 C -0.118 4.118 4 N -0.159 5.159 5 C -0.233 4.233 6 C 0.051 3.949 7 H 0.078 0.922 8 C -0.193 4.193 9 N -0.303 5.303 10 C -0.071 4.071 11 C -0.153 4.153 12 C -0.146 4.146 13 C -0.016 4.016 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 S 0.365 5.635 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.192 0.808 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.829 -4.314 14.728 27.508 hybrid contribution 0.041 -0.203 -1.017 1.038 sum -22.788 -4.517 13.711 26.976 Atomic orbital electron populations 1.20227 0.86772 1.03463 1.02900 1.26023 1.01607 0.95040 1.12092 1.21816 0.86983 1.00115 1.02889 1.66221 1.17108 1.18401 1.14154 1.27189 1.00409 0.91448 1.04272 1.20128 0.83665 0.95033 0.96118 0.92157 1.21787 1.00806 1.03406 0.93292 1.60573 1.10448 1.40733 1.18527 1.22204 0.91774 0.94678 0.98449 1.21627 0.97289 0.99354 0.96994 1.21587 0.95014 0.98538 0.99496 1.19088 0.94188 0.95067 0.93267 1.21253 1.09607 1.01088 1.23915 0.92830 1.25038 0.98014 0.94996 0.96513 1.69962 1.37731 1.14728 1.31143 0.86670 0.82795 0.80025 0.78567 1.20303 1.21318 1.20259 1.84006 0.99080 1.11704 1.68731 0.90569 0.91131 0.90136 0.80823 0.91007 0.92709 0.91292 0.83630 0.90902 0.95462 0.92760 0.91459 0.93392 0.93707 0.96752 0.96574 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.42 36.01 0.38 -0.02 16 2 C -0.23 -1.96 6.60 -35.92 -0.24 -2.19 16 3 C 0.03 0.33 11.25 -19.18 -0.22 0.12 16 4 N -0.45 -5.62 10.50 -11.86 -0.12 -5.74 16 5 C 0.05 0.52 5.90 -13.45 -0.08 0.44 16 6 C 0.16 1.88 3.11 -68.86 -0.21 1.66 16 7 H 0.06 0.63 7.80 -51.93 -0.40 0.22 16 8 C -0.13 -1.43 9.40 37.15 0.35 -1.08 16 9 N -0.67 -9.06 6.27 -107.95 -0.68 -9.74 16 10 C 0.06 0.82 5.48 -3.83 -0.02 0.80 16 11 C -0.11 -2.01 5.47 -26.73 -0.15 -2.16 16 12 C -0.11 -2.27 5.15 -26.74 -0.14 -2.40 16 13 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 14 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 S 0.11 1.01 23.18 -107.50 -2.49 -1.49 16 23 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.72 7.45 -51.92 -0.39 0.33 16 30 H 0.34 4.77 8.35 -39.29 -0.33 4.44 16 31 H 0.07 1.01 7.44 -51.93 -0.39 0.63 16 32 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -31.87 339.19 -9.88 -41.76 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.54 Total: -1.74 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -0.88 Total: -18.32 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.07 Total: -42.35 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.87 -9.88 -41.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395369240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.936 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds