Wall clock time and date at job start Mon Mar 30 2020 07:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09002 * 109.46673 * 195.04264 * 6 5 4 8 8 C 1.52994 * 109.46883 * 75.04566 * 6 5 4 9 9 N 1.46902 * 109.47240 * 315.03890 * 6 5 4 10 10 C 1.46893 * 110.99688 * 205.00324 * 9 6 5 11 11 C 1.53003 * 109.47026 * 180.02562 * 10 9 6 12 12 C 1.52999 * 109.47611 * 179.97438 * 11 10 9 13 13 C 1.52989 * 109.47630 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47389 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99897 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99741 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00489 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99783 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47109 * 59.99561 * 18 16 14 20 20 H 1.48495 * 109.47291 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46701 * 299.99769 * 18 16 14 22 22 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 26 26 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.46855 * 299.98985 * 8 6 5 28 28 H 1.08992 * 109.48027 * 59.99830 * 8 6 5 29 29 H 1.09013 * 109.46668 * 180.02562 * 8 6 5 30 30 H 1.00898 * 110.99959 * 328.95865 * 9 6 5 31 31 H 1.09002 * 109.47586 * 300.00093 * 10 9 6 32 32 H 1.08999 * 109.47511 * 60.00259 * 10 9 6 33 33 H 1.08999 * 109.47294 * 299.99736 * 11 10 9 34 34 H 1.08999 * 109.46961 * 59.99681 * 11 10 9 35 35 H 1.09007 * 109.46956 * 300.00242 * 12 11 10 36 36 H 1.09005 * 109.46790 * 59.99288 * 12 11 10 37 37 H 1.08999 * 109.47341 * 299.99870 * 13 12 11 38 38 H 1.09008 * 109.47058 * 59.99823 * 13 12 11 39 39 H 0.97001 * 119.99711 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3674 -1.9799 -0.2780 8 6 5.9584 -0.7493 1.3884 9 7 6.1391 -0.1567 -0.9809 10 6 7.2937 -0.9320 -1.4537 11 6 8.0863 -0.1011 -2.4648 12 6 9.2894 -0.9082 -2.9569 13 6 10.0816 -0.0776 -3.9684 14 6 11.2669 -0.8724 -4.4526 15 1 11.4379 -1.8703 -4.0767 16 6 12.1331 -0.3255 -5.3754 17 7 11.9247 0.8895 -5.8336 18 14 13.6020 -1.3110 -5.9761 19 1 13.1283 -2.5600 -6.6247 20 1 14.3716 -0.5043 -6.9569 21 1 14.4741 -1.6518 -4.8234 22 16 2.5436 -1.4248 -0.0077 23 1 -0.3633 -0.0055 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5091 26 1 1.9025 2.0874 -0.0004 27 1 5.9443 0.3061 1.6606 28 1 5.3755 -1.3190 2.1120 29 1 6.9873 -1.1096 1.3858 30 1 5.5636 0.1426 -1.7537 31 1 7.9343 -1.1822 -0.6080 32 1 6.9457 -1.8487 -1.9296 33 1 7.4461 0.1494 -3.3106 34 1 8.4344 0.8155 -1.9886 35 1 9.9296 -1.1584 -2.1108 36 1 8.9416 -1.8251 -3.4329 37 1 9.4412 0.1722 -4.8144 38 1 10.4293 0.8394 -3.4927 39 1 12.5343 1.2743 -6.4825 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395369240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:40 Heat of formation + Delta-G solvation = -3.962004 kcal Electronic energy + Delta-G solvation = -17235.747442 eV Core-core repulsion = 14496.198917 eV Total energy + Delta-G solvation = -2739.548525 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83252 -38.32015 -36.30972 -34.57258 -33.31481 -31.73504 -29.24465 -28.00943 -26.20856 -25.37812 -23.36140 -22.57827 -21.78317 -19.87357 -19.09763 -18.41280 -17.13580 -16.55844 -16.40952 -16.05029 -15.82941 -15.46802 -14.90010 -14.47215 -14.22849 -14.05188 -13.86691 -13.65848 -13.48899 -13.41789 -12.93897 -12.86105 -12.76972 -12.52019 -12.28666 -12.17510 -12.11290 -11.99019 -11.36453 -11.30817 -11.02798 -10.54657 -10.54333 -10.20424 -9.74336 -9.42791 -8.19018 -6.30851 -0.32137 0.31740 0.72311 1.39797 1.43622 1.51520 1.84667 2.41546 3.06198 3.13483 3.16135 3.85125 4.02197 4.09824 4.14548 4.26197 4.30353 4.35854 4.53609 4.64867 4.70925 4.71483 4.86338 4.88350 4.90766 4.95349 5.04029 5.21614 5.26060 5.28360 5.34013 5.36477 5.55759 5.78606 5.87439 6.01413 6.25878 6.31146 6.81728 6.86844 7.38457 8.92796 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043595 B = 0.002599 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.117671 B =10771.493393 C =10948.289563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.216 4.216 3 C 0.008 3.992 4 N -0.477 5.477 5 C 0.020 3.980 6 C 0.163 3.837 7 H 0.075 0.925 8 C -0.129 4.129 9 N -0.680 5.680 10 C 0.070 3.930 11 C -0.105 4.105 12 C -0.095 4.095 13 C 0.022 3.978 14 C -0.544 4.544 15 H 0.062 0.938 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.266 1.266 22 S 0.139 5.861 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.189 0.811 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.341 0.659 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.052 0.948 37 H -0.012 1.012 38 H -0.013 1.013 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.489 -5.972 15.030 29.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.337 4.337 3 C -0.142 4.142 4 N -0.191 5.191 5 C -0.257 4.257 6 C 0.050 3.950 7 H 0.092 0.908 8 C -0.189 4.189 9 N -0.313 5.313 10 C -0.059 4.059 11 C -0.143 4.143 12 C -0.133 4.133 13 C -0.015 4.015 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.190 1.190 22 S 0.394 5.606 23 H 0.109 0.891 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.206 0.794 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.160 0.840 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.006 0.994 38 H 0.006 0.994 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.809 -6.190 15.402 29.024 hybrid contribution 0.237 0.417 -1.211 1.303 sum -23.573 -5.773 14.190 28.113 Atomic orbital electron populations 1.20393 0.84349 1.04609 1.04129 1.26490 1.03140 0.94365 1.09738 1.22096 0.86556 1.01382 1.04214 1.66195 1.18663 1.19450 1.14814 1.27127 1.01065 0.91855 1.05699 1.20178 0.83805 0.95385 0.95610 0.90754 1.21753 1.01256 1.02421 0.93433 1.60511 1.10700 1.41391 1.18688 1.21983 0.91916 0.94247 0.97711 1.21447 0.96330 0.98843 0.97686 1.21384 0.95660 0.98141 0.98128 1.19027 0.94145 0.94740 0.93605 1.21722 1.10512 1.01700 1.24301 0.91991 1.26057 1.01437 0.96119 0.96610 1.70110 1.39121 1.16612 1.31777 0.85465 0.78591 0.78526 0.78253 1.19014 1.20879 1.19045 1.83828 0.97781 1.11088 1.67909 0.89143 0.90185 0.88772 0.79444 0.92923 0.90949 0.91087 0.84046 0.90168 0.94275 0.93269 0.92823 0.92760 0.92887 0.99396 0.99420 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.42 71.24 0.74 0.13 16 2 C -0.22 -3.34 6.60 24.64 0.16 -3.18 16 3 C 0.01 0.15 11.25 83.66 0.94 1.09 16 4 N -0.48 -11.91 10.50 -191.44 -2.01 -13.92 16 5 C 0.02 0.45 5.90 88.52 0.52 0.97 16 6 C 0.16 3.57 3.11 44.17 0.14 3.71 16 7 H 0.07 1.41 7.80 -2.39 -0.02 1.39 16 8 C -0.13 -2.64 9.40 71.98 0.68 -1.97 16 9 N -0.68 -18.11 6.27 -495.45 -3.11 -21.22 16 10 C 0.07 1.93 5.48 86.31 0.47 2.41 16 11 C -0.10 -3.71 5.47 30.60 0.17 -3.54 16 12 C -0.09 -3.98 5.15 30.59 0.16 -3.82 16 13 C 0.02 1.21 4.97 29.85 0.15 1.36 16 14 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 15 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 16 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.94 -58.77 13.29 21.45 0.28 -58.49 16 18 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 S 0.14 2.31 23.18 -56.49 -1.31 1.00 16 23 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.09 0.54 8.14 -2.38 -0.02 0.53 16 26 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.39 7.45 -2.38 -0.02 1.37 16 30 H 0.34 9.44 8.35 -89.70 -0.75 8.69 16 31 H 0.08 2.11 7.44 -2.39 -0.02 2.09 16 32 H 0.04 1.00 8.06 -2.39 -0.02 0.98 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -69.31 339.19 0.98 -68.34 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.27 Total: 11.52 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 4.82 Total: -34.36 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -4.83 Total: -93.63 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.00 kcal Total: -69.31 0.98 -68.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395369240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.373 kcal (2) G-P(sol) polarization free energy of solvation -69.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds