Wall clock time and date at job start Mon Mar 30 2020 07:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48500 * 109.47025 * 240.00015 * 3 2 1 5 5 H 1.48496 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46731 * 120.00043 * 3 2 1 7 7 C 1.37875 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99839 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47015 * 179.97438 * 10 9 7 12 12 S 1.81006 * 109.46931 * 179.97438 * 11 10 9 13 13 C 1.76195 * 100.00008 * 179.97438 * 12 11 10 14 14 N 1.31640 * 123.71240 * 359.96251 * 13 12 11 15 15 C 1.44459 * 107.84192 * 180.24341 * 14 13 12 16 16 H 1.09001 * 108.79875 * 267.76822 * 15 14 13 17 17 C 1.50729 * 121.25217 * 140.49463 * 15 14 13 18 18 C 1.54010 * 106.85552 * 178.96138 * 17 15 14 19 19 C 1.52490 * 111.95273 * 56.04023 * 18 17 15 20 20 C 1.54140 * 111.84917 * 306.57660 * 19 18 17 21 21 C 1.51701 * 105.89254 * 58.02260 * 20 19 18 22 22 H 1.09000 * 110.86138 * 53.08366 * 21 20 19 23 23 N 1.39283 * 123.71560 * 179.97438 * 13 12 11 24 24 H 0.97008 * 119.99950 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47059 * 60.00013 * 9 7 2 26 26 H 1.09004 * 109.47030 * 299.99908 * 9 7 2 27 27 H 1.09001 * 109.47051 * 59.99593 * 10 9 7 28 28 H 1.08999 * 109.47161 * 300.00136 * 10 9 7 29 29 H 1.08998 * 109.46907 * 60.00484 * 11 10 9 30 30 H 1.08997 * 109.47194 * 299.99375 * 11 10 9 31 31 H 1.09000 * 109.97475 * 298.29712 * 17 15 14 32 32 H 1.08998 * 109.97553 * 59.62253 * 17 15 14 33 33 H 1.09003 * 108.98523 * 176.67782 * 18 17 15 34 34 H 1.09004 * 108.98737 * 295.39996 * 18 17 15 35 35 H 1.09007 * 109.00398 * 67.18381 * 19 18 17 36 36 H 1.08999 * 109.01263 * 186.04110 * 19 18 17 37 37 H 1.09007 * 110.07865 * 177.16560 * 20 19 18 38 38 H 1.08995 * 110.07931 * 298.65834 * 20 19 18 39 39 H 0.97001 * 127.93068 * 335.50717 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9870 -0.0020 12 16 2.6565 -6.3628 -0.0025 13 6 1.5365 -7.7229 -0.0023 14 7 0.2268 -7.5909 -0.0011 15 6 -0.3516 -8.9147 0.0045 16 1 -0.5303 -9.2243 -1.0252 17 6 -1.5747 -9.2302 0.8269 18 6 -1.9170 -10.7094 0.5687 19 6 -0.7417 -11.6294 0.8808 20 6 0.5385 -11.1963 0.1396 21 6 0.8094 -9.7693 0.5774 22 1 0.8331 -9.6947 1.6645 23 7 1.9394 -9.0562 -0.0030 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5562 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 2.8713 -3.6046 0.8890 28 1 2.8726 -3.6039 -0.8909 29 1 0.8541 -5.0446 -0.8923 30 1 0.8533 -5.0450 0.8877 31 1 -1.3619 -9.0764 1.8848 32 1 -2.4054 -8.5961 0.5171 33 1 -2.7641 -10.9916 1.1939 34 1 -2.1948 -10.8316 -0.4783 35 1 -0.5532 -11.6127 1.9544 36 1 -0.9972 -12.6459 0.5815 37 1 1.3706 -11.8416 0.4215 38 1 0.3799 -11.2400 -0.9379 39 1 2.7782 -9.4255 -0.3209 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395586759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:59 Heat of formation + Delta-G solvation = 10.597961 kcal Electronic energy + Delta-G solvation = -17724.745179 eV Core-core repulsion = 14985.828021 eV Total energy + Delta-G solvation = -2738.917158 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86700 -36.35364 -34.46098 -32.52316 -31.98233 -29.64129 -29.27266 -27.40831 -23.74456 -22.95360 -22.21025 -21.09971 -20.27854 -20.09531 -17.70725 -16.35540 -15.96873 -15.70886 -15.03493 -14.75544 -14.53723 -14.48961 -13.97421 -13.39280 -13.27627 -12.49104 -12.40527 -12.27970 -12.17847 -11.72912 -11.70650 -11.35330 -11.06444 -11.00540 -10.90026 -10.80415 -10.78568 -10.56205 -10.17293 -9.77611 -9.52304 -9.32055 -9.09696 -8.37192 -8.33234 -7.57340 -5.98281 -4.01247 1.44250 2.12075 2.49663 3.35467 3.39698 3.42194 3.45973 4.18073 4.42686 4.47669 4.51131 4.84872 4.92141 5.01590 5.08157 5.16047 5.27950 5.37348 5.48596 5.60782 5.61649 5.69302 5.74261 5.75642 5.82197 5.92402 5.98835 6.17491 6.23179 6.35183 6.54786 6.73018 7.02135 7.51028 7.67549 7.74627 7.79842 8.00677 8.41331 9.05065 9.62652 11.12895 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041118 B = 0.003167 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.798853 B = 8838.198720 C = 9425.651044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.099 4.099 11 C -0.081 4.081 12 S -0.061 6.061 13 C 0.351 3.649 14 N -0.547 5.547 15 C 0.051 3.949 16 H 0.069 0.931 17 C -0.097 4.097 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.111 4.111 21 C 0.104 3.896 22 H 0.071 0.929 23 N -0.750 5.750 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -24.233 0.984 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.139 4.139 11 C -0.229 4.229 12 S 0.171 5.829 13 C -0.034 4.034 14 N -0.279 5.279 15 C -0.064 4.064 16 H 0.087 0.913 17 C -0.135 4.135 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.005 4.005 22 H 0.089 0.911 23 N -0.399 5.399 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.662 -23.504 0.995 23.535 hybrid contribution -0.129 -0.120 -0.154 0.234 sum 0.533 -23.625 0.841 23.646 Atomic orbital electron populations 1.69961 1.06053 1.26766 1.50573 1.25019 0.94852 0.99249 0.95277 0.86640 0.79561 0.83062 0.78634 1.20221 1.21299 1.20211 1.21181 0.93047 0.90880 1.50963 0.92602 1.19074 0.93706 0.90448 0.97717 1.21560 0.99371 0.91445 1.01490 1.23813 0.98862 0.93456 1.06798 1.85754 1.10595 0.95315 1.91193 1.26287 0.95192 0.88879 0.93075 1.75128 1.02649 1.21674 1.28411 1.22031 0.95125 0.89730 0.99479 0.91293 1.21138 0.97034 0.95570 0.99798 1.21595 0.97841 0.94225 1.02009 1.21560 0.94084 0.99210 1.00540 1.21618 0.98077 0.94313 1.00952 1.22203 0.86490 0.94286 0.97521 0.91076 1.45592 1.19732 1.03973 1.70621 0.92897 0.96206 0.96202 0.92330 0.92321 0.89035 0.89020 0.91503 0.90710 0.91352 0.91947 0.91767 0.91423 0.91354 0.91019 0.74253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.10 -2.04 5.16 -26.73 -0.14 -2.17 16 11 C -0.08 -1.46 5.07 37.16 0.19 -1.27 16 12 S -0.06 -0.93 22.31 -107.50 -2.40 -3.33 16 13 C 0.35 5.21 7.88 -85.41 -0.67 4.53 16 14 N -0.55 -8.86 10.92 -55.00 -0.60 -9.46 16 15 C 0.05 0.65 3.13 -69.03 -0.22 0.43 16 16 H 0.07 0.91 7.62 -51.93 -0.40 0.52 16 17 C -0.10 -1.03 6.04 -27.34 -0.17 -1.20 16 18 C -0.12 -0.92 5.79 -26.47 -0.15 -1.07 16 19 C -0.12 -0.79 5.79 -26.40 -0.15 -0.94 16 20 C -0.11 -0.86 6.06 -26.79 -0.16 -1.02 16 21 C 0.10 1.11 3.15 -67.90 -0.21 0.89 16 22 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 23 N -0.75 -8.74 6.74 -53.80 -0.36 -9.10 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.07 0.73 7.98 -51.93 -0.41 0.31 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.57 7.84 -51.93 -0.41 0.17 16 39 H 0.42 3.91 8.96 -40.82 -0.37 3.55 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -30.64 325.78 -11.58 -42.22 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.61 Total: -0.89 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.24 Total: -14.75 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.23 Total: -44.87 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.40 Total: -3.33 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.64 -11.58 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395586759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.818 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds