Wall clock time and date at job start Mon Mar 30 2020 07:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48500 * 109.47025 * 240.00015 * 3 2 1 5 5 H 1.48496 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46731 * 120.00043 * 3 2 1 7 7 C 1.37875 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99839 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47015 * 179.97438 * 10 9 7 12 12 S 1.81006 * 109.46931 * 179.97438 * 11 10 9 13 13 C 1.76195 * 100.00008 * 179.97438 * 12 11 10 14 14 N 1.31640 * 123.71240 * 359.96251 * 13 12 11 15 15 C 1.44459 * 107.84192 * 180.24341 * 14 13 12 16 16 H 1.09001 * 108.79875 * 267.76822 * 15 14 13 17 17 C 1.50729 * 121.25217 * 140.49463 * 15 14 13 18 18 C 1.54010 * 106.85552 * 178.96138 * 17 15 14 19 19 C 1.52490 * 111.95273 * 56.04023 * 18 17 15 20 20 C 1.54140 * 111.84917 * 306.57660 * 19 18 17 21 21 C 1.51701 * 105.89254 * 58.02260 * 20 19 18 22 22 H 1.09000 * 110.86138 * 53.08366 * 21 20 19 23 23 N 1.39283 * 123.71560 * 179.97438 * 13 12 11 24 24 H 0.97008 * 119.99950 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47059 * 60.00013 * 9 7 2 26 26 H 1.09004 * 109.47030 * 299.99908 * 9 7 2 27 27 H 1.09001 * 109.47051 * 59.99593 * 10 9 7 28 28 H 1.08999 * 109.47161 * 300.00136 * 10 9 7 29 29 H 1.08998 * 109.46907 * 60.00484 * 11 10 9 30 30 H 1.08997 * 109.47194 * 299.99375 * 11 10 9 31 31 H 1.09000 * 109.97475 * 298.29712 * 17 15 14 32 32 H 1.08998 * 109.97553 * 59.62253 * 17 15 14 33 33 H 1.09003 * 108.98523 * 176.67782 * 18 17 15 34 34 H 1.09004 * 108.98737 * 295.39996 * 18 17 15 35 35 H 1.09007 * 109.00398 * 67.18381 * 19 18 17 36 36 H 1.08999 * 109.01263 * 186.04110 * 19 18 17 37 37 H 1.09007 * 110.07865 * 177.16560 * 20 19 18 38 38 H 1.08995 * 110.07931 * 298.65834 * 20 19 18 39 39 H 0.97001 * 127.93068 * 335.50717 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9870 -0.0020 12 16 2.6565 -6.3628 -0.0025 13 6 1.5365 -7.7229 -0.0023 14 7 0.2268 -7.5909 -0.0011 15 6 -0.3516 -8.9147 0.0045 16 1 -0.5303 -9.2243 -1.0252 17 6 -1.5747 -9.2302 0.8269 18 6 -1.9170 -10.7094 0.5687 19 6 -0.7417 -11.6294 0.8808 20 6 0.5385 -11.1963 0.1396 21 6 0.8094 -9.7693 0.5774 22 1 0.8331 -9.6947 1.6645 23 7 1.9394 -9.0562 -0.0030 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5562 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 2.8713 -3.6046 0.8890 28 1 2.8726 -3.6039 -0.8909 29 1 0.8541 -5.0446 -0.8923 30 1 0.8533 -5.0450 0.8877 31 1 -1.3619 -9.0764 1.8848 32 1 -2.4054 -8.5961 0.5171 33 1 -2.7641 -10.9916 1.1939 34 1 -2.1948 -10.8316 -0.4783 35 1 -0.5532 -11.6127 1.9544 36 1 -0.9972 -12.6459 0.5815 37 1 1.3706 -11.8416 0.4215 38 1 0.3799 -11.2400 -0.9379 39 1 2.7782 -9.4255 -0.3209 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395586759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:59 Heat of formation + Delta-G solvation = -8.445449 kcal Electronic energy + Delta-G solvation = -17725.570963 eV Core-core repulsion = 14985.828021 eV Total energy + Delta-G solvation = -2739.742942 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.80973 -37.15371 -36.38290 -34.09445 -33.39925 -30.53128 -30.12390 -29.33891 -25.48364 -24.11038 -23.09128 -22.14694 -21.79811 -21.06418 -18.84076 -18.38932 -16.96622 -16.81381 -16.51359 -16.26938 -15.75433 -15.61501 -15.06813 -14.45772 -14.22206 -14.15470 -13.76946 -13.66744 -13.16128 -13.05259 -12.97680 -12.78796 -12.69316 -12.40145 -12.14150 -11.80746 -11.74230 -11.63879 -11.60235 -11.51108 -11.30465 -11.11482 -10.54237 -10.48885 -9.41947 -8.79415 -8.18696 -6.30474 0.21052 0.96664 1.12034 1.42169 1.45523 1.53383 2.42846 2.52995 3.14637 3.33037 3.69200 3.84693 4.03023 4.06446 4.13285 4.15657 4.28817 4.34152 4.37177 4.55675 4.62739 4.72067 4.81138 4.85387 4.99997 5.02770 5.10848 5.12996 5.15164 5.16727 5.26948 5.39980 5.44775 5.50353 5.68695 5.83885 6.22584 6.45183 6.85029 6.85804 7.38842 8.93118 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041118 B = 0.003167 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.798853 B = 8838.198720 C = 9425.651044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.032 3.968 10 C -0.084 4.084 11 C -0.079 4.079 12 S -0.024 6.024 13 C 0.341 3.659 14 N -0.589 5.589 15 C 0.040 3.960 16 H 0.062 0.938 17 C -0.097 4.097 18 C -0.113 4.113 19 C -0.113 4.113 20 C -0.104 4.104 21 C 0.110 3.890 22 H 0.065 0.935 23 N -0.738 5.738 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.920 -25.882 1.133 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.007 4.007 10 C -0.123 4.123 11 C -0.228 4.228 12 S 0.208 5.792 13 C -0.044 4.044 14 N -0.321 5.321 15 C -0.074 4.074 16 H 0.080 0.920 17 C -0.135 4.135 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.142 4.142 21 C 0.002 3.998 22 H 0.083 0.917 23 N -0.388 5.388 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.155 -25.181 1.142 25.299 hybrid contribution -0.629 0.326 -0.204 0.737 sum 1.525 -24.855 0.938 24.920 Atomic orbital electron populations 1.70108 1.07902 1.27892 1.51538 1.26010 0.95761 1.03475 0.94661 0.85472 0.78228 0.77894 0.79288 1.19047 1.20961 1.19023 1.21652 0.93729 0.92067 1.50772 0.91717 1.18950 0.94171 0.92442 0.95185 1.21261 0.98121 0.90832 1.02090 1.23451 0.99240 0.94329 1.05759 1.85434 1.08532 0.93818 1.91407 1.26268 0.95083 0.89947 0.93147 1.75091 1.03641 1.24250 1.29130 1.22194 0.96803 0.88743 0.99637 0.91992 1.21173 0.95697 0.97647 0.98992 1.21573 0.98939 0.92121 1.02473 1.21570 0.92960 0.99865 1.00711 1.21630 0.99271 0.92265 1.01060 1.22267 0.84874 0.95611 0.97026 0.91668 1.45593 1.20528 1.02738 1.69954 0.92750 0.98791 0.98775 0.91613 0.91585 0.90166 0.90141 0.92067 0.92155 0.89957 0.91761 0.91353 0.89250 0.89452 0.91019 0.72814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.08 -3.49 5.16 30.59 0.16 -3.33 16 11 C -0.08 -2.91 5.07 71.98 0.36 -2.54 16 12 S -0.02 -0.71 22.31 -56.49 -1.26 -1.97 16 13 C 0.34 9.95 7.88 178.53 1.41 11.36 16 14 N -0.59 -19.34 10.92 -327.92 -3.58 -22.92 16 15 C 0.04 1.02 3.13 45.36 0.14 1.17 16 16 H 0.06 1.64 7.62 -2.39 -0.02 1.62 16 17 C -0.10 -2.05 6.04 30.20 0.18 -1.86 16 18 C -0.11 -1.55 5.79 30.77 0.18 -1.38 16 19 C -0.11 -1.22 5.79 30.81 0.18 -1.04 16 20 C -0.10 -1.33 6.06 30.55 0.19 -1.14 16 21 C 0.11 2.20 3.15 45.45 0.14 2.34 16 22 H 0.07 1.41 7.90 -2.39 -0.02 1.39 16 23 N -0.74 -16.05 6.74 -324.11 -2.18 -18.23 16 24 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 25 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.08 3.12 8.14 -2.40 -0.02 3.10 16 30 H 0.08 3.13 8.14 -2.40 -0.02 3.11 16 31 H 0.06 1.34 7.98 -2.39 -0.02 1.32 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.07 0.96 7.84 -2.39 -0.02 0.94 16 39 H 0.43 7.10 8.96 -92.71 -0.83 6.27 16 Total: -1.00 -67.08 325.78 -0.74 -67.82 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.19 Total: 11.46 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 3.78 Total: -25.20 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -5.48 Total: -98.68 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -1.26 Total: -1.97 kcal Total: -67.08 -0.74 -67.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395586759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.376 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds