Wall clock time and date at job start Mon Mar 30 2020 07:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00161 * 2 1 4 4 H 1.48501 * 109.46771 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46644 * 299.99738 * 3 2 1 6 6 H 1.48491 * 109.47082 * 59.99907 * 3 2 1 7 7 C 1.37887 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99783 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46957 * 180.02562 * 10 9 7 12 12 S 1.80994 * 109.47026 * 180.02562 * 11 10 9 13 13 C 1.76201 * 100.00173 * 179.97438 * 12 11 10 14 14 N 1.31555 * 123.35473 * 359.97112 * 13 12 11 15 15 C 1.44899 * 107.18694 * 186.77373 * 14 13 12 16 16 H 1.09004 * 109.53774 * 88.82821 * 15 14 13 17 17 C 1.51165 * 119.64058 * 216.44957 * 15 14 13 18 18 C 1.54186 * 106.32167 * 180.14570 * 17 15 14 19 19 C 1.53083 * 112.26691 * 303.82466 * 18 17 15 20 20 C 1.53942 * 112.49178 * 51.66375 * 19 18 17 21 21 C 1.51159 * 106.92372 * 304.61334 * 20 19 18 22 22 H 1.08998 * 109.92098 * 305.99197 * 21 20 19 23 23 N 1.39762 * 123.08867 * 179.37574 * 13 12 11 24 24 H 0.97000 * 120.00427 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47124 * 59.99857 * 9 7 2 26 26 H 1.09000 * 109.47027 * 299.99988 * 9 7 2 27 27 H 1.08996 * 109.47382 * 59.99907 * 10 9 7 28 28 H 1.09000 * 109.47128 * 299.99819 * 10 9 7 29 29 H 1.08996 * 109.47341 * 59.99649 * 11 10 9 30 30 H 1.09000 * 109.46863 * 299.99748 * 11 10 9 31 31 H 1.08996 * 110.07159 * 299.34932 * 17 15 14 32 32 H 1.08999 * 110.07227 * 60.83335 * 17 15 14 33 33 H 1.09005 * 109.03135 * 63.19347 * 18 17 15 34 34 H 1.09003 * 109.02423 * 182.10551 * 18 17 15 35 35 H 1.09003 * 107.73180 * 291.55154 * 19 18 17 36 36 H 1.08997 * 109.73943 * 173.14895 * 19 18 17 37 37 H 1.09002 * 109.97713 * 185.23225 * 20 19 18 38 38 H 1.08997 * 109.97512 * 63.99375 * 20 19 18 39 39 H 0.97008 * 128.08744 * 18.10474 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4993 0.0017 10 6 2.2452 -3.6622 0.0027 11 6 1.4801 -4.9872 0.0033 12 16 2.6563 -6.3629 0.0053 13 6 1.5362 -7.7231 0.0064 14 7 0.2281 -7.5829 0.0063 15 6 -0.3441 -8.9040 0.1706 16 1 -0.4558 -9.1233 1.2325 17 6 -1.6199 -9.2619 -0.5568 18 6 -1.9493 -10.7160 -0.1642 19 6 -0.7985 -11.6760 -0.4764 20 6 0.5439 -11.1945 0.1033 21 6 0.7778 -9.7992 -0.4289 22 1 0.7114 -9.8007 -1.5169 23 7 1.9550 -9.0564 -0.0047 24 1 -0.4851 0.8400 -0.0004 25 1 0.6239 -2.5576 -0.8880 26 1 0.6246 -2.5564 0.8920 27 1 2.8718 -3.6037 0.8926 28 1 2.8718 -3.6053 -0.8873 29 1 0.8537 -5.0454 -0.8868 30 1 0.8532 -5.0443 0.8931 31 1 -2.4267 -8.5983 -0.2457 32 1 -1.4697 -9.1882 -1.6339 33 1 -2.1383 -10.7605 0.9084 34 1 -2.8462 -11.0333 -0.6963 35 1 -0.7109 -11.7478 -1.5605 36 1 -1.0238 -12.6639 -0.0746 37 1 1.3477 -11.8559 -0.2198 38 1 0.4935 -11.1743 1.1919 39 1 2.8286 -9.4111 0.2235 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395586763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:06 Heat of formation + Delta-G solvation = 8.700767 kcal Electronic energy + Delta-G solvation = -17716.683582 eV Core-core repulsion = 14977.684156 eV Total energy + Delta-G solvation = -2738.999426 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79130 -36.27854 -34.46299 -32.57425 -31.98676 -29.67415 -29.23870 -27.40914 -23.73380 -22.94995 -22.21896 -21.03458 -20.29283 -20.12442 -17.72500 -16.36270 -15.90302 -15.70608 -15.05293 -14.75803 -14.53431 -14.48296 -13.95621 -13.40985 -13.19609 -12.50698 -12.42549 -12.33642 -12.17547 -11.73341 -11.70173 -11.35473 -11.08026 -11.02678 -10.91407 -10.82494 -10.75668 -10.51829 -10.17524 -9.78332 -9.56753 -9.32771 -9.07238 -8.35554 -8.33635 -7.58373 -5.98737 -4.01458 1.44431 2.13120 2.49423 3.32885 3.40259 3.43628 3.44778 4.16930 4.41998 4.47561 4.51721 4.82369 4.92672 5.03707 5.09695 5.14787 5.28807 5.37131 5.46582 5.60579 5.61736 5.69751 5.74231 5.75570 5.81864 5.92225 5.97945 6.17389 6.22890 6.30760 6.54777 6.73058 7.02091 7.48567 7.67896 7.73692 7.79648 8.00500 8.41204 9.05322 9.62533 11.12537 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041310 B = 0.003163 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.640549 B = 8850.861787 C = 9445.776118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.099 4.099 11 C -0.080 4.080 12 S -0.064 6.064 13 C 0.353 3.647 14 N -0.550 5.550 15 C 0.052 3.948 16 H 0.073 0.927 17 C -0.097 4.097 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.111 4.111 21 C 0.103 3.897 22 H 0.069 0.931 23 N -0.745 5.745 24 H 0.260 0.740 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 -24.278 -0.284 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.139 4.139 11 C -0.228 4.228 12 S 0.168 5.832 13 C -0.032 4.032 14 N -0.282 5.282 15 C -0.062 4.062 16 H 0.091 0.909 17 C -0.135 4.135 18 C -0.158 4.158 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.006 4.006 22 H 0.086 0.914 23 N -0.395 5.395 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 0.665 -23.549 -0.365 23.561 hybrid contribution -0.143 -0.119 0.155 0.242 sum 0.522 -23.667 -0.210 23.674 Atomic orbital electron populations 1.69976 1.06053 1.26543 1.50756 1.25026 0.94851 0.99277 0.95305 0.86526 0.80117 0.83745 0.77567 1.19706 1.21010 1.21021 1.21255 0.93117 0.90845 1.50686 0.92499 1.19086 0.93722 0.90485 0.97729 1.21559 0.99366 0.91438 1.01493 1.23809 0.98826 0.93400 1.06808 1.85745 1.10739 0.95458 1.91210 1.26395 0.95340 0.88809 0.92651 1.75392 1.02257 1.21524 1.29050 1.22380 0.95165 0.89189 0.99505 0.90925 1.21257 0.96580 0.95542 1.00168 1.21729 0.97957 0.94327 1.01759 1.21596 0.93680 0.98835 1.01212 1.21460 0.97779 0.94653 1.01104 1.22009 0.85919 0.93980 0.98682 0.91356 1.45643 1.13648 1.03750 1.76414 0.93013 0.96181 0.96208 0.92333 0.92320 0.88989 0.89058 0.90633 0.91440 0.92122 0.91263 0.92041 0.91269 0.91382 0.91154 0.74221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 10 C -0.10 -2.03 5.16 -26.73 -0.14 -2.17 16 11 C -0.08 -1.44 5.05 37.16 0.19 -1.25 16 12 S -0.06 -0.97 22.31 -107.50 -2.40 -3.37 16 13 C 0.35 5.23 7.87 -85.01 -0.67 4.56 16 14 N -0.55 -8.88 10.91 -54.18 -0.59 -9.48 16 15 C 0.05 0.66 3.12 -68.36 -0.21 0.45 16 16 H 0.07 0.96 7.77 -51.93 -0.40 0.55 16 17 C -0.10 -1.04 6.07 -27.04 -0.16 -1.20 16 18 C -0.12 -0.93 5.82 -26.07 -0.15 -1.08 16 19 C -0.12 -0.79 5.84 -26.20 -0.15 -0.94 16 20 C -0.11 -0.87 6.02 -27.17 -0.16 -1.03 16 21 C 0.10 1.10 3.15 -68.04 -0.21 0.89 16 22 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 23 N -0.75 -8.66 6.78 -53.83 -0.37 -9.02 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 30 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.74 7.93 -51.93 -0.41 0.33 16 33 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.56 7.92 -51.93 -0.41 0.15 16 39 H 0.42 3.89 8.96 -40.82 -0.37 3.52 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -30.65 325.96 -11.57 -42.22 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.61 Total: -0.97 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.23 Total: -14.70 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.22 Total: -44.77 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.40 Total: -3.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.65 -11.57 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395586763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.916 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds