Wall clock time and date at job start Mon Mar 30 2020 07:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00161 * 2 1 4 4 H 1.48501 * 109.46771 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46644 * 299.99738 * 3 2 1 6 6 H 1.48491 * 109.47082 * 59.99907 * 3 2 1 7 7 C 1.37887 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99783 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46957 * 180.02562 * 10 9 7 12 12 S 1.80994 * 109.47026 * 180.02562 * 11 10 9 13 13 C 1.76201 * 100.00173 * 179.97438 * 12 11 10 14 14 N 1.31555 * 123.35473 * 359.97112 * 13 12 11 15 15 C 1.44899 * 107.18694 * 186.77373 * 14 13 12 16 16 H 1.09004 * 109.53774 * 88.82821 * 15 14 13 17 17 C 1.51165 * 119.64058 * 216.44957 * 15 14 13 18 18 C 1.54186 * 106.32167 * 180.14570 * 17 15 14 19 19 C 1.53083 * 112.26691 * 303.82466 * 18 17 15 20 20 C 1.53942 * 112.49178 * 51.66375 * 19 18 17 21 21 C 1.51159 * 106.92372 * 304.61334 * 20 19 18 22 22 H 1.08998 * 109.92098 * 305.99197 * 21 20 19 23 23 N 1.39762 * 123.08867 * 179.37574 * 13 12 11 24 24 H 0.97000 * 120.00427 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47124 * 59.99857 * 9 7 2 26 26 H 1.09000 * 109.47027 * 299.99988 * 9 7 2 27 27 H 1.08996 * 109.47382 * 59.99907 * 10 9 7 28 28 H 1.09000 * 109.47128 * 299.99819 * 10 9 7 29 29 H 1.08996 * 109.47341 * 59.99649 * 11 10 9 30 30 H 1.09000 * 109.46863 * 299.99748 * 11 10 9 31 31 H 1.08996 * 110.07159 * 299.34932 * 17 15 14 32 32 H 1.08999 * 110.07227 * 60.83335 * 17 15 14 33 33 H 1.09005 * 109.03135 * 63.19347 * 18 17 15 34 34 H 1.09003 * 109.02423 * 182.10551 * 18 17 15 35 35 H 1.09003 * 107.73180 * 291.55154 * 19 18 17 36 36 H 1.08997 * 109.73943 * 173.14895 * 19 18 17 37 37 H 1.09002 * 109.97713 * 185.23225 * 20 19 18 38 38 H 1.08997 * 109.97512 * 63.99375 * 20 19 18 39 39 H 0.97008 * 128.08744 * 18.10474 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4993 0.0017 10 6 2.2452 -3.6622 0.0027 11 6 1.4801 -4.9872 0.0033 12 16 2.6563 -6.3629 0.0053 13 6 1.5362 -7.7231 0.0064 14 7 0.2281 -7.5829 0.0063 15 6 -0.3441 -8.9040 0.1706 16 1 -0.4558 -9.1233 1.2325 17 6 -1.6199 -9.2619 -0.5568 18 6 -1.9493 -10.7160 -0.1642 19 6 -0.7985 -11.6760 -0.4764 20 6 0.5439 -11.1945 0.1033 21 6 0.7778 -9.7992 -0.4289 22 1 0.7114 -9.8007 -1.5169 23 7 1.9550 -9.0564 -0.0047 24 1 -0.4851 0.8400 -0.0004 25 1 0.6239 -2.5576 -0.8880 26 1 0.6246 -2.5564 0.8920 27 1 2.8718 -3.6037 0.8926 28 1 2.8718 -3.6053 -0.8873 29 1 0.8537 -5.0454 -0.8868 30 1 0.8532 -5.0443 0.8931 31 1 -2.4267 -8.5983 -0.2457 32 1 -1.4697 -9.1882 -1.6339 33 1 -2.1383 -10.7605 0.9084 34 1 -2.8462 -11.0333 -0.6963 35 1 -0.7109 -11.7478 -1.5605 36 1 -1.0238 -12.6639 -0.0746 37 1 1.3477 -11.8559 -0.2198 38 1 0.4935 -11.1743 1.1919 39 1 2.8286 -9.4111 0.2235 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395586763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:05 Heat of formation + Delta-G solvation = -10.327715 kcal Electronic energy + Delta-G solvation = -17717.508719 eV Core-core repulsion = 14977.684156 eV Total energy + Delta-G solvation = -2739.824563 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.73370 -37.07968 -36.38396 -34.09918 -33.45017 -30.56143 -30.09251 -29.33844 -25.48078 -24.09585 -23.09267 -22.14521 -21.76530 -21.09015 -18.85307 -18.40115 -16.88488 -16.83515 -16.50370 -16.27519 -15.74272 -15.63439 -15.03970 -14.47372 -14.24574 -14.10718 -13.76259 -13.65510 -13.18268 -13.05392 -13.03113 -12.78943 -12.75024 -12.34561 -12.14125 -11.83185 -11.78060 -11.64554 -11.60259 -11.45795 -11.28785 -11.10295 -10.55633 -10.53070 -9.39885 -8.80202 -8.19058 -6.30537 0.21268 0.98546 1.11341 1.42248 1.42385 1.56092 2.42630 2.50838 3.14465 3.31694 3.69663 3.85202 4.03148 4.06468 4.09809 4.15459 4.27538 4.35198 4.38859 4.55613 4.62569 4.70163 4.81183 4.85777 4.99200 5.02616 5.10237 5.12860 5.15197 5.17026 5.26459 5.36969 5.43646 5.50767 5.68662 5.83989 6.22595 6.43186 6.84093 6.86096 7.38790 8.93180 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041310 B = 0.003163 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.640549 B = 8850.861787 C = 9445.776118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.031 3.969 10 C -0.084 4.084 11 C -0.078 4.078 12 S -0.027 6.027 13 C 0.344 3.656 14 N -0.591 5.591 15 C 0.041 3.959 16 H 0.066 0.934 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.104 4.104 21 C 0.110 3.890 22 H 0.062 0.938 23 N -0.733 5.733 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -25.931 -0.323 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.008 4.008 10 C -0.123 4.123 11 C -0.227 4.227 12 S 0.205 5.795 13 C -0.042 4.042 14 N -0.325 5.325 15 C -0.072 4.072 16 H 0.084 0.916 17 C -0.135 4.135 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.143 4.143 21 C 0.001 3.999 22 H 0.080 0.920 23 N -0.383 5.383 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.128 -25.229 -0.402 25.322 hybrid contribution -0.634 0.331 0.166 0.734 sum 1.494 -24.898 -0.236 24.944 Atomic orbital electron populations 1.70113 1.07888 1.27758 1.51675 1.26011 0.95766 1.03480 0.94707 0.85362 0.79149 0.78597 0.77724 1.18356 1.20417 1.20430 1.21703 0.93713 0.92038 1.50518 0.91748 1.18961 0.94181 0.92462 0.95206 1.21259 0.98119 0.90835 1.02084 1.23445 0.99203 0.94274 1.05767 1.85422 1.08669 0.93968 1.91428 1.26378 0.95224 0.89870 0.92751 1.75354 1.03245 1.24084 1.29770 1.22534 0.96847 0.88305 0.99545 0.91587 1.21280 0.95236 0.97474 0.99513 1.21704 0.99102 0.92406 1.02015 1.21609 0.92515 0.99336 1.01570 1.21473 0.98998 0.92755 1.01069 1.22067 0.84393 0.95119 0.98277 0.92008 1.45639 1.14581 1.02532 1.75570 0.92761 0.98754 0.98769 0.91598 0.91622 0.90137 0.90162 0.92062 0.92035 0.91961 0.89870 0.91643 0.89092 0.89480 0.91121 0.72756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.66 4.97 29.85 0.15 1.81 16 10 C -0.08 -3.49 5.16 30.59 0.16 -3.33 16 11 C -0.08 -2.87 5.05 71.98 0.36 -2.51 16 12 S -0.03 -0.80 22.31 -56.49 -1.26 -2.06 16 13 C 0.34 10.00 7.87 178.39 1.40 11.40 16 14 N -0.59 -19.37 10.91 -325.32 -3.55 -22.92 16 15 C 0.04 1.05 3.12 45.57 0.14 1.19 16 16 H 0.07 1.73 7.77 -2.39 -0.02 1.71 16 17 C -0.10 -2.05 6.07 30.40 0.18 -1.86 16 18 C -0.11 -1.58 5.82 31.02 0.18 -1.40 16 19 C -0.11 -1.22 5.84 30.94 0.18 -1.04 16 20 C -0.10 -1.34 6.02 30.31 0.18 -1.16 16 21 C 0.11 2.19 3.15 45.45 0.14 2.33 16 22 H 0.06 1.34 7.85 -2.39 -0.02 1.32 16 23 N -0.73 -15.88 6.78 -324.21 -2.20 -18.08 16 24 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.08 3.13 8.14 -2.40 -0.02 3.12 16 30 H 0.08 3.12 8.14 -2.40 -0.02 3.10 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.35 7.93 -2.39 -0.02 1.33 16 33 H 0.06 0.85 8.13 -2.38 -0.02 0.83 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.94 7.92 -2.39 -0.02 0.92 16 39 H 0.43 7.03 8.96 -92.70 -0.83 6.20 16 Total: -1.00 -67.02 325.96 -0.73 -67.75 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.19 Total: 11.19 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 3.78 Total: -25.06 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -5.46 Total: -98.43 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -1.26 Total: -2.06 kcal Total: -67.02 -0.73 -67.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395586763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.420 kcal (2) G-P(sol) polarization free energy of solvation -67.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds