Wall clock time and date at job start Mon Mar 30 2020 07:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00165 * 2 1 4 4 H 1.48499 * 109.47123 * 239.99948 * 3 2 1 5 5 H 1.48503 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47137 * 119.99800 * 3 2 1 7 7 C 1.37876 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99946 * 174.27228 * 7 2 1 9 9 C 1.50698 * 119.99987 * 354.26501 * 7 2 1 10 10 H 1.09003 * 109.46949 * 34.00624 * 9 7 2 11 11 C 1.50705 * 109.46997 * 153.99952 * 9 7 2 12 12 C 1.38236 * 120.00117 * 239.87941 * 11 9 7 13 13 C 1.38239 * 119.99594 * 179.97438 * 12 11 9 14 14 C 1.38236 * 120.00390 * 359.97438 * 13 12 11 15 15 C 1.38237 * 119.99518 * 359.97438 * 14 13 12 16 16 C 1.38233 * 120.00436 * 0.07226 * 15 14 13 17 17 N 1.46503 * 109.47520 * 274.00379 * 9 7 2 18 18 C 1.34938 * 126.03511 * 324.66878 * 17 9 7 19 19 C 1.35317 * 107.74862 * 179.97438 * 18 17 9 20 20 C 1.50701 * 126.04268 * 180.02562 * 19 18 17 21 21 C 1.52999 * 117.49595 * 188.61856 * 20 19 18 22 22 C 1.52996 * 60.00095 * 252.51011 * 21 20 19 23 23 C 1.39875 * 107.91472 * 0.02562 * 19 18 17 24 24 N 1.30831 * 108.20420 * 359.73938 * 23 19 18 25 25 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00163 * 359.97438 * 12 11 9 27 27 H 1.07998 * 119.99418 * 179.97438 * 13 12 11 28 28 H 1.07994 * 119.99706 * 179.72303 * 14 13 12 29 29 H 1.08004 * 119.99533 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.99716 * 179.97438 * 16 15 14 31 31 H 1.08003 * 126.13021 * 0.02562 * 18 17 9 32 32 H 1.08997 * 115.54817 * 334.32449 * 20 19 18 33 33 H 1.09007 * 117.49977 * 0.02562 * 21 20 19 34 34 H 1.09004 * 117.49825 * 145.02091 * 21 20 19 35 35 H 1.09001 * 117.49728 * 252.50861 * 22 21 20 36 36 H 1.08998 * 117.51484 * 107.48046 * 22 21 20 37 37 H 1.08002 * 125.89414 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0805 -1.1964 -0.0928 9 6 1.2567 -2.4958 0.1315 10 1 0.2907 -2.4115 -0.3664 11 6 2.0567 -3.6013 -0.5081 12 6 1.5220 -4.3223 -1.5593 13 6 2.2561 -5.3359 -2.1463 14 6 3.5251 -5.6282 -1.6824 15 6 4.0601 -4.9064 -0.6318 16 6 3.3257 -3.8935 -0.0442 17 7 1.0502 -2.7999 1.5497 18 6 1.9102 -2.5277 2.5533 19 6 1.3507 -2.9640 3.7056 20 6 1.9605 -2.8655 5.0802 21 6 1.2531 -3.5997 6.2210 22 6 1.1913 -2.0732 6.1392 23 6 0.1064 -3.5224 3.3953 24 7 -0.0771 -3.4199 2.1040 25 1 -0.4850 0.8400 -0.0004 26 1 0.5308 -4.0937 -1.9220 27 1 1.8382 -5.8995 -2.9673 28 1 4.0968 -6.4231 -2.1381 29 1 5.0514 -5.1351 -0.2691 30 1 3.7436 -3.3299 0.7768 31 1 2.8723 -2.0470 2.4547 32 1 3.0491 -2.8196 5.1093 33 1 0.3468 -4.1542 5.9772 34 1 1.8763 -4.0371 7.0010 35 1 1.7739 -1.5063 6.8653 36 1 0.2445 -1.6228 5.8415 37 1 -0.5856 -3.9584 4.1007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402056168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:54 Heat of formation + Delta-G solvation = 117.272632 kcal Electronic energy + Delta-G solvation = -19774.328782 eV Core-core repulsion = 16904.593434 eV Total energy + Delta-G solvation = -2869.735348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21187 -38.53577 -36.50367 -34.19367 -31.88845 -30.38107 -29.58752 -28.93309 -26.65401 -23.84339 -22.23323 -21.98483 -21.88658 -21.02366 -19.57068 -18.67431 -16.85457 -16.38840 -15.82028 -15.08870 -14.84079 -14.43605 -14.12841 -13.61630 -13.53184 -13.16620 -12.87552 -12.48504 -12.22783 -11.96722 -11.69524 -11.34034 -11.28359 -11.18152 -11.10985 -10.71936 -10.54077 -10.37028 -9.96483 -9.90512 -9.81237 -9.40320 -8.93938 -8.36558 -8.21744 -8.12197 -7.16734 -6.48782 -4.64129 1.93310 1.96819 3.08157 3.14617 3.17402 3.19108 3.60420 3.82845 4.08442 4.49892 4.51001 5.02152 5.15059 5.36945 5.40777 5.44051 5.52550 5.56004 5.76219 5.81432 5.92842 6.00285 6.04782 6.10181 6.15620 6.29704 6.45488 6.49255 6.56376 6.59904 6.77314 6.99848 7.01389 7.04257 7.05724 7.37864 7.46053 7.54573 7.63790 7.84992 8.38785 8.51349 8.97543 9.08184 10.56165 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.008495 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.452435 B = 3295.317672 C = 4866.469397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.082 3.918 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.072 0.928 9 C 0.293 3.707 10 H 0.091 0.909 11 C -0.055 4.055 12 C -0.113 4.113 13 C -0.126 4.126 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.105 4.105 17 N -0.312 5.312 18 C 0.088 3.912 19 C -0.253 4.253 20 C -0.053 4.053 21 C -0.183 4.183 22 C -0.183 4.183 23 C 0.023 3.977 24 N -0.313 5.313 25 H 0.273 0.727 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 -5.824 3.708 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.090 0.910 9 C 0.197 3.803 10 H 0.109 0.891 11 C -0.056 4.056 12 C -0.132 4.132 13 C -0.144 4.144 14 C -0.158 4.158 15 C -0.145 4.145 16 C -0.123 4.123 17 N -0.092 5.092 18 C -0.063 4.063 19 C -0.265 4.265 20 C -0.073 4.073 21 C -0.220 4.220 22 C -0.221 4.221 23 C -0.161 4.161 24 N -0.135 5.135 25 H 0.083 0.917 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.174 0.826 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.061 -5.927 2.528 7.617 hybrid contribution 0.942 1.173 0.752 1.681 sum 5.003 -4.755 3.279 7.642 Atomic orbital electron populations 1.69945 1.06408 1.28404 1.43653 1.25194 0.94928 1.00246 0.92512 0.86443 0.79748 0.81532 0.79322 1.19506 1.20769 1.19397 1.21116 0.94081 0.88837 1.52766 0.91016 1.18231 0.97763 0.89899 0.74401 0.89112 1.20504 0.94710 0.95135 0.95265 1.21058 0.99820 0.95501 0.96783 1.21005 0.94978 0.98272 1.00109 1.20940 0.96108 1.00515 0.98216 1.21037 0.99491 0.96885 0.97124 1.21014 0.94366 0.97056 0.99887 1.50829 1.10225 1.40023 1.08148 1.21873 0.97293 0.99319 0.87804 1.19051 0.98513 1.15710 0.93204 1.20048 0.96788 1.03239 0.87205 1.22887 1.03119 0.94709 1.01282 1.22969 1.02892 0.93671 1.02541 1.23250 0.96768 1.02545 0.93556 1.77179 1.09113 1.18089 1.09074 0.91680 0.86371 0.86841 0.87068 0.86940 0.86451 0.82644 0.88317 0.89080 0.89516 0.89575 0.89063 0.82531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.15 12.90 55.43 0.72 -22.43 16 2 C 0.08 2.08 5.45 -17.82 -0.10 1.99 16 3 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.53 -13.19 7.39 -34.44 -0.25 -13.45 16 8 H 0.07 1.73 7.42 -52.49 -0.39 1.34 16 9 C 0.29 7.07 2.96 -70.23 -0.21 6.86 16 10 H 0.09 2.47 7.23 -51.93 -0.38 2.09 16 11 C -0.05 -1.17 4.97 -104.62 -0.52 -1.69 16 12 C -0.11 -2.19 9.67 -39.58 -0.38 -2.57 16 13 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 14 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 15 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 16 C -0.10 -2.03 8.67 -39.58 -0.34 -2.37 16 17 N -0.31 -7.41 3.45 -57.13 -0.20 -7.61 16 18 C 0.09 1.91 9.45 -17.23 -0.16 1.74 16 19 C -0.25 -5.00 5.76 -105.05 -0.61 -5.61 16 20 C -0.05 -0.85 6.25 -91.77 -0.57 -1.43 16 21 C -0.18 -2.47 10.02 -26.73 -0.27 -2.74 16 22 C -0.18 -2.64 10.23 -26.73 -0.27 -2.91 16 23 C 0.02 0.48 11.35 -17.37 -0.20 0.28 16 24 N -0.31 -7.50 12.58 30.63 0.39 -7.11 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.12 2.22 7.95 -52.49 -0.42 1.80 16 27 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 30 H 0.12 2.22 6.99 -52.49 -0.37 1.86 16 31 H 0.16 3.13 7.63 -52.48 -0.40 2.73 16 32 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.09 1.23 6.98 -51.93 -0.36 0.86 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.16 2.75 7.19 -52.49 -0.38 2.37 16 LS Contribution 318.56 15.07 4.80 4.80 Total: -1.00 -28.22 318.56 -9.18 -37.40 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.78 Total: 9.72 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -5.08 Total: -29.45 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.90 Total: -37.15 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.22 -9.18 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402056168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.674 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds