Wall clock time and date at job start Mon Mar 30 2020 07:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00165 * 2 1 4 4 H 1.48499 * 109.47123 * 239.99948 * 3 2 1 5 5 H 1.48503 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47137 * 119.99800 * 3 2 1 7 7 C 1.37876 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99946 * 174.27228 * 7 2 1 9 9 C 1.50698 * 119.99987 * 354.26501 * 7 2 1 10 10 H 1.09003 * 109.46949 * 34.00624 * 9 7 2 11 11 C 1.50705 * 109.46997 * 153.99952 * 9 7 2 12 12 C 1.38236 * 120.00117 * 239.87941 * 11 9 7 13 13 C 1.38239 * 119.99594 * 179.97438 * 12 11 9 14 14 C 1.38236 * 120.00390 * 359.97438 * 13 12 11 15 15 C 1.38237 * 119.99518 * 359.97438 * 14 13 12 16 16 C 1.38233 * 120.00436 * 0.07226 * 15 14 13 17 17 N 1.46503 * 109.47520 * 274.00379 * 9 7 2 18 18 C 1.34938 * 126.03511 * 324.66878 * 17 9 7 19 19 C 1.35317 * 107.74862 * 179.97438 * 18 17 9 20 20 C 1.50701 * 126.04268 * 180.02562 * 19 18 17 21 21 C 1.52999 * 117.49595 * 188.61856 * 20 19 18 22 22 C 1.52996 * 60.00095 * 252.51011 * 21 20 19 23 23 C 1.39875 * 107.91472 * 0.02562 * 19 18 17 24 24 N 1.30831 * 108.20420 * 359.73938 * 23 19 18 25 25 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00163 * 359.97438 * 12 11 9 27 27 H 1.07998 * 119.99418 * 179.97438 * 13 12 11 28 28 H 1.07994 * 119.99706 * 179.72303 * 14 13 12 29 29 H 1.08004 * 119.99533 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.99716 * 179.97438 * 16 15 14 31 31 H 1.08003 * 126.13021 * 0.02562 * 18 17 9 32 32 H 1.08997 * 115.54817 * 334.32449 * 20 19 18 33 33 H 1.09007 * 117.49977 * 0.02562 * 21 20 19 34 34 H 1.09004 * 117.49825 * 145.02091 * 21 20 19 35 35 H 1.09001 * 117.49728 * 252.50861 * 22 21 20 36 36 H 1.08998 * 117.51484 * 107.48046 * 22 21 20 37 37 H 1.08002 * 125.89414 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0805 -1.1964 -0.0928 9 6 1.2567 -2.4958 0.1315 10 1 0.2907 -2.4115 -0.3664 11 6 2.0567 -3.6013 -0.5081 12 6 1.5220 -4.3223 -1.5593 13 6 2.2561 -5.3359 -2.1463 14 6 3.5251 -5.6282 -1.6824 15 6 4.0601 -4.9064 -0.6318 16 6 3.3257 -3.8935 -0.0442 17 7 1.0502 -2.7999 1.5497 18 6 1.9102 -2.5277 2.5533 19 6 1.3507 -2.9640 3.7056 20 6 1.9605 -2.8655 5.0802 21 6 1.2531 -3.5997 6.2210 22 6 1.1913 -2.0732 6.1392 23 6 0.1064 -3.5224 3.3953 24 7 -0.0771 -3.4199 2.1040 25 1 -0.4850 0.8400 -0.0004 26 1 0.5308 -4.0937 -1.9220 27 1 1.8382 -5.8995 -2.9673 28 1 4.0968 -6.4231 -2.1381 29 1 5.0514 -5.1351 -0.2691 30 1 3.7436 -3.3299 0.7768 31 1 2.8723 -2.0470 2.4547 32 1 3.0491 -2.8196 5.1093 33 1 0.3468 -4.1542 5.9772 34 1 1.8763 -4.0371 7.0010 35 1 1.7739 -1.5063 6.8653 36 1 0.2445 -1.6228 5.8415 37 1 -0.5856 -3.9584 4.1007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402056168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:53 Heat of formation + Delta-G solvation = 103.733479 kcal Electronic energy + Delta-G solvation = -19774.915883 eV Core-core repulsion = 16904.593434 eV Total energy + Delta-G solvation = -2870.322450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88142 -39.96324 -37.75607 -35.94331 -33.67783 -31.78387 -31.17260 -30.52270 -28.45481 -25.57718 -23.63588 -23.26540 -23.14491 -22.51584 -21.26111 -20.21674 -18.73395 -17.82041 -17.40357 -16.69517 -16.12646 -16.00749 -15.64647 -15.16002 -14.92368 -14.82037 -14.29219 -14.12320 -13.82221 -13.47175 -13.30075 -12.91832 -12.89172 -12.76616 -12.29914 -12.23916 -12.00184 -11.82687 -11.59467 -11.40405 -11.23313 -10.99388 -10.86520 -9.99268 -9.74370 -9.58287 -8.77706 -8.41363 -6.63726 0.51168 0.57338 1.34116 1.37869 1.44183 1.46687 2.04540 2.12831 2.27796 3.04760 3.11107 3.28722 3.88158 4.07133 4.12059 4.19649 4.24424 4.25118 4.34358 4.38226 4.48220 4.65179 4.69081 4.75854 4.88494 4.91471 5.10159 5.14304 5.17100 5.27397 5.38173 5.40898 5.47203 5.54427 5.64092 5.64856 5.74940 5.90452 6.17267 6.21421 6.53787 6.67493 7.11511 7.26482 8.63667 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.008495 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.452435 B = 3295.317672 C = 4866.469397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.033 3.967 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.301 3.699 10 H 0.042 0.958 11 C -0.086 4.086 12 C -0.138 4.138 13 C -0.121 4.121 14 C -0.129 4.129 15 C -0.123 4.123 16 C -0.120 4.120 17 N -0.326 5.326 18 C 0.068 3.932 19 C -0.242 4.242 20 C -0.079 4.079 21 C -0.162 4.162 22 C -0.179 4.179 23 C 0.022 3.978 24 N -0.359 5.359 25 H 0.271 0.729 26 H 0.106 0.894 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.147 0.853 30 H 0.112 0.888 31 H 0.164 0.836 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.575 -7.169 4.822 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.173 4.173 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.573 4.573 8 H 0.094 0.906 9 C 0.204 3.796 10 H 0.061 0.939 11 C -0.087 4.087 12 C -0.156 4.156 13 C -0.139 4.139 14 C -0.147 4.147 15 C -0.141 4.141 16 C -0.138 4.138 17 N -0.106 5.106 18 C -0.082 4.082 19 C -0.254 4.254 20 C -0.098 4.098 21 C -0.198 4.198 22 C -0.217 4.217 23 C -0.162 4.162 24 N -0.181 5.181 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.165 0.835 30 H 0.130 0.870 31 H 0.181 0.819 32 H 0.132 0.868 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.586 -7.283 3.652 10.476 hybrid contribution 0.159 1.441 0.435 1.513 sum 6.745 -5.842 4.087 9.814 Atomic orbital electron populations 1.70096 1.08083 1.28832 1.46112 1.26027 0.95503 1.03593 0.92134 0.85474 0.78471 0.77342 0.79786 1.18520 1.20951 1.18517 1.21342 0.94219 0.89484 1.52270 0.90620 1.17878 0.95734 0.91337 0.74651 0.93948 1.20401 0.95791 0.95795 0.96695 1.21164 1.00110 0.97064 0.97287 1.21369 0.95229 0.96961 1.00292 1.21452 0.95602 1.00524 0.97099 1.21434 1.00523 0.95383 0.96728 1.21060 0.93924 0.98443 1.00395 1.50471 1.10773 1.41086 1.08253 1.22208 0.97716 1.00172 0.88084 1.19465 0.97717 1.13552 0.94652 1.20153 0.97723 1.06257 0.85657 1.22996 1.02798 0.94075 0.99972 1.23000 1.02004 0.94776 1.01890 1.23791 0.97669 1.01789 0.92952 1.77116 1.10088 1.20002 1.10931 0.92010 0.87579 0.83630 0.82756 0.83512 0.86957 0.81856 0.86797 0.89119 0.86697 0.87247 0.90753 0.79655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.61 12.90 21.45 0.28 -51.33 16 2 C 0.03 1.75 5.45 84.65 0.46 2.21 16 3 Si 0.97 41.33 29.54 68.60 2.03 43.36 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 7 C -0.53 -27.86 7.39 25.60 0.19 -27.68 16 8 H 0.08 3.77 7.42 -2.91 -0.02 3.75 16 9 C 0.30 15.50 2.96 43.50 0.13 15.63 16 10 H 0.04 2.53 7.23 -2.39 -0.02 2.52 16 11 C -0.09 -3.80 4.97 -19.86 -0.10 -3.90 16 12 C -0.14 -5.51 9.67 22.27 0.22 -5.30 16 13 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 14 C -0.13 -3.57 10.05 22.27 0.22 -3.34 16 15 C -0.12 -3.75 10.05 22.27 0.22 -3.52 16 16 C -0.12 -4.62 8.67 22.27 0.19 -4.43 16 17 N -0.33 -16.23 3.45 -334.65 -1.15 -17.39 16 18 C 0.07 3.02 9.45 83.54 0.79 3.81 16 19 C -0.24 -9.54 5.76 -20.14 -0.12 -9.66 16 20 C -0.08 -2.35 6.25 -11.54 -0.07 -2.43 16 21 C -0.16 -3.84 10.02 30.59 0.31 -3.53 16 22 C -0.18 -4.72 10.23 30.59 0.31 -4.41 16 23 C 0.02 0.90 11.35 85.24 0.97 1.87 16 24 N -0.36 -18.00 12.58 -57.02 -0.72 -18.71 16 25 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.11 4.33 7.95 -2.91 -0.02 4.30 16 27 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.11 4.31 6.99 -2.91 -0.02 4.29 16 31 H 0.16 6.74 7.63 -2.91 -0.02 6.72 16 32 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.09 2.17 6.98 -2.38 -0.02 2.16 16 34 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.19 6.37 7.19 -2.91 -0.02 6.35 16 Total: -1.00 -65.36 318.56 5.44 -59.92 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 1.06 Total: 32.37 kcal Atomic # 6 Polarization: -52.16 SS G_CDS: 3.95 Total: -48.21 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -1.59 Total: -87.43 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -65.36 5.44 -59.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402056168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.655 kcal (2) G-P(sol) polarization free energy of solvation -65.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds