Wall clock time and date at job start Mon Mar 30 2020 07:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99931 * 2 1 4 4 H 1.48502 * 109.46856 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47115 * 299.99605 * 3 2 1 6 6 H 1.48501 * 109.47114 * 60.00073 * 3 2 1 7 7 C 1.37878 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00189 * 173.71048 * 7 2 1 9 9 C 1.50702 * 120.00029 * 353.70568 * 7 2 1 10 10 H 1.09002 * 109.46651 * 327.02177 * 9 7 2 11 11 C 1.50690 * 109.47339 * 207.02162 * 9 7 2 12 12 C 1.38234 * 119.99936 * 300.28714 * 11 9 7 13 13 C 1.38241 * 119.99629 * 179.78776 * 12 11 9 14 14 C 1.38232 * 120.00125 * 0.44150 * 13 12 11 15 15 C 1.38228 * 120.00146 * 359.81416 * 14 13 12 16 16 C 1.38237 * 120.00178 * 359.97438 * 15 14 13 17 17 N 1.46502 * 109.46918 * 87.01841 * 9 7 2 18 18 C 1.34938 * 126.03779 * 35.29984 * 17 9 7 19 19 C 1.35321 * 107.74752 * 179.83743 * 18 17 9 20 20 C 1.50697 * 126.03967 * 180.16116 * 19 18 17 21 21 C 1.53011 * 117.49577 * 188.90287 * 20 19 18 22 22 C 1.52997 * 59.99822 * 252.51140 * 21 20 19 23 23 C 1.39868 * 107.91564 * 0.42218 * 19 18 17 24 24 N 1.30828 * 108.20492 * 359.73924 * 23 19 18 25 25 H 0.96999 * 120.00147 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.00323 * 359.97438 * 12 11 9 27 27 H 1.08001 * 119.99979 * 180.27284 * 13 12 11 28 28 H 1.08006 * 119.99856 * 179.83362 * 14 13 12 29 29 H 1.08011 * 120.00282 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.00136 * 180.02562 * 16 15 14 31 31 H 1.07998 * 126.12847 * 359.97438 * 18 17 9 32 32 H 1.08995 * 115.55500 * 334.60789 * 20 19 18 33 33 H 1.08994 * 117.50080 * 0.02562 * 21 20 19 34 34 H 1.09002 * 117.49486 * 145.02020 * 21 20 19 35 35 H 1.09004 * 117.49965 * 252.51212 * 22 21 20 36 36 H 1.09000 * 117.52002 * 107.48800 * 22 21 20 37 37 H 1.08009 * 125.89314 * 179.76151 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0796 -1.1968 -0.1030 9 6 1.2579 -2.4953 0.1420 10 1 0.3867 -2.3463 0.7798 11 6 2.1631 -3.5286 0.7614 12 6 3.3419 -3.8815 0.1315 13 6 4.1744 -4.8263 0.7020 14 6 3.8236 -5.4247 1.8977 15 6 2.6423 -5.0756 2.5249 16 6 1.8119 -4.1277 1.9567 17 7 0.8230 -2.9559 -1.1790 18 6 1.5024 -2.8064 -2.3352 19 6 0.7665 -3.3689 -3.3218 20 6 1.1422 -3.4366 -4.7796 21 6 0.0773 -3.9300 -5.7613 22 6 1.2691 -4.8237 -5.4127 23 6 -0.4072 -3.8710 -2.7502 24 7 -0.3744 -3.6241 -1.4658 25 1 -0.4850 0.8400 0.0004 26 1 3.6139 -3.4171 -0.8047 27 1 5.0975 -5.0989 0.2121 28 1 4.4728 -6.1647 2.3421 29 1 2.3681 -5.5434 3.4590 30 1 0.8892 -3.8547 2.4470 31 1 2.4626 -2.3261 -2.4521 32 1 1.8253 -2.6610 -5.1256 33 1 -0.8950 -4.2051 -5.3528 34 1 0.0598 -3.4787 -6.7534 35 1 2.0358 -4.9605 -6.1754 36 1 1.0815 -5.6873 -4.7747 37 1 -1.2029 -4.3759 -3.2780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402056169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:57 Heat of formation + Delta-G solvation = 117.236319 kcal Electronic energy + Delta-G solvation = -19779.084212 eV Core-core repulsion = 16909.347290 eV Total energy + Delta-G solvation = -2869.736923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18263 -38.53951 -36.49514 -34.18921 -31.88663 -30.38616 -29.57015 -28.90609 -26.65751 -23.83473 -22.21968 -21.99932 -21.87980 -21.01353 -19.55698 -18.65201 -16.84422 -16.38859 -15.82573 -15.05717 -14.86306 -14.43172 -14.10776 -13.69442 -13.43238 -13.13584 -12.88561 -12.50845 -12.23862 -12.02133 -11.63242 -11.38867 -11.24041 -11.17591 -11.11961 -10.70381 -10.54596 -10.35850 -9.97309 -9.89974 -9.74018 -9.35850 -8.98581 -8.37048 -8.18640 -8.12543 -7.13640 -6.47437 -4.64713 1.92565 1.96161 3.06930 3.16141 3.18524 3.21549 3.63140 3.85093 4.08651 4.49816 4.52952 5.01375 5.15298 5.37736 5.40168 5.43395 5.51551 5.55879 5.76875 5.84568 5.95159 5.99725 6.05973 6.10094 6.15335 6.30085 6.45636 6.48323 6.56227 6.60181 6.77364 6.99246 7.01511 7.03927 7.08567 7.36340 7.46982 7.54763 7.64267 7.86668 8.41226 8.51641 9.00325 9.08679 10.56623 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.008548 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.956072 B = 3274.714426 C = 4881.247037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.079 3.921 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.073 0.927 9 C 0.295 3.705 10 H 0.086 0.914 11 C -0.056 4.056 12 C -0.104 4.104 13 C -0.127 4.127 14 C -0.139 4.139 15 C -0.126 4.126 16 C -0.114 4.114 17 N -0.309 5.309 18 C 0.090 3.910 19 C -0.253 4.253 20 C -0.053 4.053 21 C -0.183 4.183 22 C -0.184 4.184 23 C 0.023 3.977 24 N -0.313 5.313 25 H 0.272 0.728 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.155 0.845 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -6.569 -3.225 8.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.091 0.909 9 C 0.199 3.801 10 H 0.104 0.896 11 C -0.057 4.057 12 C -0.122 4.122 13 C -0.145 4.145 14 C -0.157 4.157 15 C -0.144 4.144 16 C -0.132 4.132 17 N -0.089 5.089 18 C -0.061 4.061 19 C -0.265 4.265 20 C -0.072 4.072 21 C -0.220 4.220 22 C -0.222 4.222 23 C -0.161 4.161 24 N -0.135 5.135 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.173 0.827 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.913 -6.533 -1.909 7.851 hybrid contribution 0.774 1.077 -0.862 1.582 sum 4.687 -5.455 -2.771 7.707 Atomic orbital electron populations 1.70013 1.06356 1.28115 1.43661 1.25214 0.94927 1.00269 0.92729 0.86318 0.80314 0.82170 0.78133 1.19026 1.20453 1.20297 1.21205 0.93931 0.88627 1.52968 0.90899 1.18240 0.94208 0.88938 0.78671 0.89574 1.20513 0.95432 0.95133 0.94619 1.21018 0.94203 0.97030 0.99957 1.21042 0.99461 0.97783 0.96240 1.20941 0.97383 1.00997 0.96425 1.21002 0.95136 0.98508 0.99729 1.21056 0.99596 0.96465 0.96100 1.50757 1.11414 1.38720 1.08027 1.21836 0.98538 0.99231 0.86500 1.19030 0.98822 1.15088 0.93586 1.20056 1.00902 0.96158 0.90086 1.22882 0.94580 1.04856 0.99646 1.22965 1.00577 0.95224 1.03406 1.23228 0.98040 1.02680 0.92180 1.77164 1.04632 1.16013 1.15652 0.91849 0.86424 0.86924 0.87061 0.86841 0.86410 0.82722 0.88289 0.89058 0.89503 0.89629 0.89185 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.07 13.00 55.43 0.72 -22.35 16 2 C 0.08 2.01 5.45 -17.82 -0.10 1.91 16 3 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.53 -13.14 7.39 -34.44 -0.25 -13.39 16 8 H 0.07 1.77 7.41 -52.49 -0.39 1.38 16 9 C 0.30 7.12 2.88 -70.24 -0.20 6.92 16 10 H 0.09 2.33 7.39 -51.93 -0.38 1.95 16 11 C -0.06 -1.18 4.97 -104.63 -0.52 -1.70 16 12 C -0.10 -2.00 8.67 -39.58 -0.34 -2.35 16 13 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 14 C -0.14 -2.17 10.05 -39.59 -0.40 -2.57 16 15 C -0.13 -2.06 10.05 -39.59 -0.40 -2.46 16 16 C -0.11 -2.19 9.67 -39.58 -0.38 -2.57 16 17 N -0.31 -7.37 3.45 -57.13 -0.20 -7.57 16 18 C 0.09 1.96 9.46 -17.23 -0.16 1.80 16 19 C -0.25 -5.06 5.76 -105.05 -0.61 -5.66 16 20 C -0.05 -0.85 6.25 -91.77 -0.57 -1.42 16 21 C -0.18 -2.51 10.02 -26.73 -0.27 -2.78 16 22 C -0.18 -2.53 10.23 -26.73 -0.27 -2.81 16 23 C 0.02 0.48 11.35 -17.37 -0.20 0.28 16 24 N -0.31 -7.54 12.58 30.62 0.39 -7.16 16 25 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.12 2.24 6.99 -52.49 -0.37 1.87 16 27 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 29 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.12 2.18 7.95 -52.49 -0.42 1.77 16 31 H 0.16 3.13 7.63 -52.49 -0.40 2.73 16 32 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.09 1.26 6.97 -51.93 -0.36 0.90 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.16 2.77 7.19 -52.48 -0.38 2.39 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -28.31 318.72 -9.17 -37.49 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.79 Total: 9.49 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -5.07 Total: -29.31 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.91 Total: -37.07 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.31 -9.17 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402056169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.724 kcal (2) G-P(sol) polarization free energy of solvation -28.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds