Wall clock time and date at job start Mon Mar 30 2020 07:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99931 * 2 1 4 4 H 1.48502 * 109.46856 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47115 * 299.99605 * 3 2 1 6 6 H 1.48501 * 109.47114 * 60.00073 * 3 2 1 7 7 C 1.37878 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00189 * 173.71048 * 7 2 1 9 9 C 1.50702 * 120.00029 * 353.70568 * 7 2 1 10 10 H 1.09002 * 109.46651 * 327.02177 * 9 7 2 11 11 C 1.50690 * 109.47339 * 207.02162 * 9 7 2 12 12 C 1.38234 * 119.99936 * 300.28714 * 11 9 7 13 13 C 1.38241 * 119.99629 * 179.78776 * 12 11 9 14 14 C 1.38232 * 120.00125 * 0.44150 * 13 12 11 15 15 C 1.38228 * 120.00146 * 359.81416 * 14 13 12 16 16 C 1.38237 * 120.00178 * 359.97438 * 15 14 13 17 17 N 1.46502 * 109.46918 * 87.01841 * 9 7 2 18 18 C 1.34938 * 126.03779 * 35.29984 * 17 9 7 19 19 C 1.35321 * 107.74752 * 179.83743 * 18 17 9 20 20 C 1.50697 * 126.03967 * 180.16116 * 19 18 17 21 21 C 1.53011 * 117.49577 * 188.90287 * 20 19 18 22 22 C 1.52997 * 59.99822 * 252.51140 * 21 20 19 23 23 C 1.39868 * 107.91564 * 0.42218 * 19 18 17 24 24 N 1.30828 * 108.20492 * 359.73924 * 23 19 18 25 25 H 0.96999 * 120.00147 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.00323 * 359.97438 * 12 11 9 27 27 H 1.08001 * 119.99979 * 180.27284 * 13 12 11 28 28 H 1.08006 * 119.99856 * 179.83362 * 14 13 12 29 29 H 1.08011 * 120.00282 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.00136 * 180.02562 * 16 15 14 31 31 H 1.07998 * 126.12847 * 359.97438 * 18 17 9 32 32 H 1.08995 * 115.55500 * 334.60789 * 20 19 18 33 33 H 1.08994 * 117.50080 * 0.02562 * 21 20 19 34 34 H 1.09002 * 117.49486 * 145.02020 * 21 20 19 35 35 H 1.09004 * 117.49965 * 252.51212 * 22 21 20 36 36 H 1.09000 * 117.52002 * 107.48800 * 22 21 20 37 37 H 1.08009 * 125.89314 * 179.76151 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0796 -1.1968 -0.1030 9 6 1.2579 -2.4953 0.1420 10 1 0.3867 -2.3463 0.7798 11 6 2.1631 -3.5286 0.7614 12 6 3.3419 -3.8815 0.1315 13 6 4.1744 -4.8263 0.7020 14 6 3.8236 -5.4247 1.8977 15 6 2.6423 -5.0756 2.5249 16 6 1.8119 -4.1277 1.9567 17 7 0.8230 -2.9559 -1.1790 18 6 1.5024 -2.8064 -2.3352 19 6 0.7665 -3.3689 -3.3218 20 6 1.1422 -3.4366 -4.7796 21 6 0.0773 -3.9300 -5.7613 22 6 1.2691 -4.8237 -5.4127 23 6 -0.4072 -3.8710 -2.7502 24 7 -0.3744 -3.6241 -1.4658 25 1 -0.4850 0.8400 0.0004 26 1 3.6139 -3.4171 -0.8047 27 1 5.0975 -5.0989 0.2121 28 1 4.4728 -6.1647 2.3421 29 1 2.3681 -5.5434 3.4590 30 1 0.8892 -3.8547 2.4470 31 1 2.4626 -2.3261 -2.4521 32 1 1.8253 -2.6610 -5.1256 33 1 -0.8950 -4.2051 -5.3528 34 1 0.0598 -3.4787 -6.7534 35 1 2.0358 -4.9605 -6.1754 36 1 1.0815 -5.6873 -4.7747 37 1 -1.2029 -4.3759 -3.2780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402056169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:56 Heat of formation + Delta-G solvation = 103.630743 kcal Electronic energy + Delta-G solvation = -19779.674194 eV Core-core repulsion = 16909.347290 eV Total energy + Delta-G solvation = -2870.326905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85959 -39.96448 -37.74660 -35.93769 -33.67386 -31.78447 -31.15986 -30.50316 -28.45874 -25.56806 -23.63282 -23.26416 -23.13466 -22.50369 -21.25454 -20.20349 -18.72748 -17.81762 -17.40412 -16.67511 -16.18585 -15.95154 -15.58958 -15.26638 -14.87038 -14.74835 -14.31165 -14.15822 -13.84893 -13.51673 -13.24057 -12.95445 -12.85616 -12.75027 -12.27752 -12.22748 -11.98195 -11.81515 -11.54113 -11.41079 -11.22234 -10.96577 -10.91656 -9.96258 -9.74490 -9.58841 -8.75440 -8.39719 -6.64134 0.50767 0.57131 1.33581 1.37474 1.46017 1.50545 2.06656 2.14915 2.28605 3.05283 3.10210 3.30443 3.87798 4.06715 4.11960 4.19445 4.24110 4.25643 4.34137 4.41443 4.48877 4.64358 4.71531 4.75610 4.88367 4.91709 5.10546 5.15118 5.16893 5.26475 5.38912 5.42308 5.48489 5.55445 5.63817 5.64708 5.75034 5.90706 6.18625 6.21332 6.54008 6.69401 7.12040 7.28468 8.64683 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.008548 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.956072 B = 3274.714426 C = 4881.247037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.030 3.970 3 Si 0.970 3.030 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.303 3.697 10 H 0.039 0.961 11 C -0.086 4.086 12 C -0.119 4.119 13 C -0.123 4.123 14 C -0.128 4.128 15 C -0.120 4.120 16 C -0.137 4.137 17 N -0.322 5.322 18 C 0.069 3.931 19 C -0.242 4.242 20 C -0.082 4.082 21 C -0.170 4.170 22 C -0.166 4.166 23 C 0.020 3.980 24 N -0.358 5.358 25 H 0.270 0.730 26 H 0.111 0.889 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.107 0.893 31 H 0.162 0.838 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -8.037 -4.302 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.572 4.572 8 H 0.094 0.906 9 C 0.206 3.794 10 H 0.057 0.943 11 C -0.087 4.087 12 C -0.138 4.138 13 C -0.141 4.141 14 C -0.146 4.146 15 C -0.138 4.138 16 C -0.156 4.156 17 N -0.102 5.102 18 C -0.081 4.081 19 C -0.254 4.254 20 C -0.101 4.101 21 C -0.207 4.207 22 C -0.203 4.203 23 C -0.163 4.163 24 N -0.181 5.181 25 H 0.079 0.921 26 H 0.129 0.871 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.164 0.836 30 H 0.125 0.875 31 H 0.180 0.820 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.163 -8.014 -2.997 10.545 hybrid contribution 0.077 1.377 -0.547 1.483 sum 6.240 -6.638 -3.544 9.775 Atomic orbital electron populations 1.70153 1.08042 1.28651 1.46062 1.26046 0.95512 1.03624 0.92322 0.85319 0.79475 0.77966 0.77909 1.17825 1.20467 1.20059 1.21416 0.93995 0.89289 1.52466 0.90625 1.17920 0.92815 0.90259 0.78410 0.94318 1.20399 0.96253 0.96144 0.95929 1.21053 0.94233 0.98400 1.00072 1.21431 0.99885 0.96261 0.96518 1.21451 0.97047 1.00613 0.95520 1.21370 0.94781 0.97035 1.00636 1.21169 1.00322 0.98010 0.96085 1.50430 1.11810 1.39617 1.08360 1.22164 0.99244 1.00280 0.86424 1.19441 0.97589 1.12953 0.95412 1.20131 1.03383 0.98554 0.88079 1.22995 0.94101 1.03831 0.99770 1.22999 1.01090 0.93294 1.02948 1.23762 0.99026 1.02089 0.91435 1.77097 1.05479 1.17834 1.17686 0.92072 0.87086 0.83572 0.82752 0.83578 0.87475 0.82019 0.87415 0.89262 0.87155 0.87073 0.89920 0.79755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.37 13.00 21.45 0.28 -51.09 16 2 C 0.03 1.61 5.45 84.66 0.46 2.07 16 3 Si 0.97 41.31 29.54 68.60 2.03 43.34 16 4 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.53 -27.74 7.39 25.60 0.19 -27.55 16 8 H 0.08 3.79 7.41 -2.91 -0.02 3.76 16 9 C 0.30 15.58 2.88 43.50 0.13 15.71 16 10 H 0.04 2.30 7.39 -2.39 -0.02 2.28 16 11 C -0.09 -3.80 4.97 -19.87 -0.10 -3.90 16 12 C -0.12 -4.61 8.67 22.27 0.19 -4.42 16 13 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 14 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 15 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 16 C -0.14 -5.44 9.67 22.27 0.22 -5.23 16 17 N -0.32 -16.15 3.45 -334.67 -1.15 -17.30 16 18 C 0.07 3.10 9.46 83.54 0.79 3.89 16 19 C -0.24 -9.68 5.76 -20.14 -0.12 -9.80 16 20 C -0.08 -2.51 6.25 -11.54 -0.07 -2.58 16 21 C -0.17 -4.19 10.02 30.60 0.31 -3.89 16 22 C -0.17 -4.08 10.23 30.59 0.31 -3.76 16 23 C 0.02 0.86 11.35 85.24 0.97 1.83 16 24 N -0.36 -18.10 12.58 -57.02 -0.72 -18.82 16 25 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.11 4.31 6.99 -2.92 -0.02 4.29 16 27 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 28 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.11 4.30 7.95 -2.91 -0.02 4.28 16 31 H 0.16 6.78 7.63 -2.91 -0.02 6.76 16 32 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.09 2.24 6.97 -2.39 -0.02 2.23 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.19 6.44 7.19 -2.91 -0.02 6.42 16 Total: -1.00 -65.38 318.72 5.44 -59.94 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 1.06 Total: 31.91 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 3.95 Total: -47.97 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -1.59 Total: -87.21 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -65.38 5.44 -59.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402056169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.567 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds