Wall clock time and date at job start Mon Mar 30 2020 07:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37812 * 121.55822 * 2 1 4 4 C 1.35144 * 114.75987 * 180.02562 * 3 2 1 5 5 C 1.50693 * 127.24907 * 180.26620 * 4 3 2 6 6 N 1.46899 * 109.47479 * 89.70172 * 5 4 3 7 7 C 1.46899 * 111.00096 * 66.04572 * 6 5 4 8 8 C 1.46895 * 110.99894 * 190.00157 * 6 5 4 9 9 C 1.53008 * 109.46983 * 169.99794 * 8 6 5 10 10 C 1.53000 * 109.47056 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46926 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47180 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99975 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00444 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99861 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00364 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47247 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47123 * 120.00066 * 16 14 12 19 19 H 1.48511 * 109.46895 * 239.99952 * 16 14 12 20 20 S 1.72059 * 105.50009 * 359.97438 * 4 3 2 21 21 N 1.30078 * 121.55914 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.47174 * 269.97482 * 1 2 3 23 23 H 1.09002 * 109.47372 * 29.98233 * 1 2 3 24 24 H 1.09007 * 109.47346 * 149.97629 * 1 2 3 25 25 H 1.07992 * 122.62094 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.47118 * 209.70556 * 5 4 3 27 27 H 1.09000 * 109.46923 * 329.69577 * 5 4 3 28 28 H 1.08995 * 109.47000 * 59.99833 * 7 6 5 29 29 H 1.08998 * 109.47028 * 180.02562 * 7 6 5 30 30 H 1.09007 * 109.46807 * 300.00373 * 7 6 5 31 31 H 1.08997 * 109.47325 * 289.99879 * 8 6 5 32 32 H 1.08998 * 109.47737 * 50.00205 * 8 6 5 33 33 H 1.08997 * 109.47159 * 300.00186 * 9 8 6 34 34 H 1.09001 * 109.46570 * 60.00214 * 9 8 6 35 35 H 1.09001 * 109.47092 * 300.00109 * 10 9 8 36 36 H 1.08996 * 109.47060 * 59.99882 * 10 9 8 37 37 H 1.09001 * 109.47136 * 299.99852 * 11 10 9 38 38 H 1.08996 * 109.47535 * 59.99943 * 11 10 9 39 39 H 0.96998 * 120.00160 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2282 1.1743 0.0000 4 6 3.5702 1.0143 -0.0005 5 6 4.6179 2.0974 0.0049 6 7 4.9529 2.4478 1.3916 7 6 5.6081 1.3244 2.0747 8 6 5.7888 3.6546 1.4423 9 6 5.9099 4.1305 2.8915 10 6 6.7811 5.3872 2.9445 11 6 6.9027 5.8627 4.3936 12 6 7.7602 7.1008 4.4457 13 1 8.1772 7.5076 3.5363 14 6 8.0125 7.7143 5.6544 15 7 7.5044 7.2193 6.7619 16 14 9.0761 9.2486 5.7191 17 1 9.5229 9.5995 4.3471 18 1 8.2891 10.3728 6.2867 19 1 10.2623 8.9928 6.5753 20 16 3.8305 -0.6864 -0.0003 21 7 2.1878 -1.1084 0.0005 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3634 0.8901 -0.5136 24 1 -0.3634 -0.8898 -0.5142 25 1 1.7578 2.1464 0.0004 26 1 5.5121 1.7405 -0.5060 27 1 4.2328 2.9779 -0.5095 28 1 6.5265 1.0647 1.5482 29 1 5.8449 1.6106 3.0995 30 1 4.9387 0.4642 2.0835 31 1 6.7802 3.4267 1.0507 32 1 5.3315 4.4391 0.8394 33 1 4.9186 4.3584 3.2831 34 1 6.3673 3.3461 3.4944 35 1 7.7724 5.1588 2.5530 36 1 6.3242 6.1717 2.3413 37 1 5.9115 6.0909 4.7854 38 1 7.3598 5.0780 4.9964 39 1 7.6816 7.6510 7.6122 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404438254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:30 Heat of formation + Delta-G solvation = 20.065685 kcal Electronic energy + Delta-G solvation = -17384.007488 eV Core-core repulsion = 14645.500882 eV Total energy + Delta-G solvation = -2738.506606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44300 -37.90453 -34.59056 -32.74755 -31.66396 -29.85823 -28.69733 -27.61587 -25.69899 -23.61437 -21.78431 -20.75579 -20.02867 -19.64755 -18.08570 -16.22655 -15.94899 -15.63620 -15.26851 -14.75358 -14.46097 -14.27095 -14.21540 -13.32077 -13.17410 -12.66397 -12.57951 -12.55984 -12.36370 -12.19409 -11.78226 -11.63367 -11.43546 -11.09883 -10.98906 -10.64790 -10.52903 -10.47330 -10.38794 -9.72785 -9.61980 -9.26706 -8.99999 -8.77704 -8.42626 -8.33010 -5.97995 -4.00213 0.48280 1.28730 1.66249 2.22378 3.31539 3.38911 3.42976 3.88192 4.20776 4.47458 4.71470 4.87918 4.99043 5.00346 5.15417 5.21506 5.23136 5.35920 5.37744 5.49708 5.51179 5.56962 5.70502 5.82919 5.83207 5.91763 6.11802 6.18859 6.46703 6.48862 6.77984 6.90910 6.95700 6.99870 7.20871 7.71171 7.86587 8.03139 8.45772 9.07594 9.63760 11.13399 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044708 B = 0.002673 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.132775 B =10473.111225 C =10639.583048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.118 3.882 3 C -0.188 4.188 4 C -0.150 4.150 5 C 0.125 3.875 6 N -0.536 5.536 7 C 0.013 3.987 8 C 0.057 3.943 9 C -0.114 4.114 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 S 0.240 5.760 21 N -0.467 5.467 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.158 0.842 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.028 0.972 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.684 -14.599 -15.788 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.223 4.223 4 C -0.280 4.280 5 C -0.005 4.005 6 N -0.260 5.260 7 C -0.136 4.136 8 C -0.070 4.070 9 C -0.152 4.152 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 S 0.395 5.605 21 N -0.289 5.289 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.175 0.825 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.046 0.954 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.232 -16.525 -15.366 24.777 hybrid contribution 0.491 2.332 -0.187 2.390 sum -9.741 -14.193 -15.553 23.200 Atomic orbital electron populations 1.20560 0.86560 1.03772 1.03685 1.21518 0.99075 0.88379 0.97048 1.21126 0.92416 1.00693 1.08100 1.25351 0.98657 1.00857 1.03149 1.20506 0.93949 0.94788 0.91209 1.62030 1.45796 1.05189 1.13008 1.22594 0.96945 0.93611 1.00405 1.22290 0.94404 0.90629 0.99677 1.21686 1.01222 0.98641 0.93620 1.21597 0.97379 0.94596 1.01124 1.19090 0.96973 0.95770 0.89780 1.21322 1.30701 1.10783 0.92954 0.92729 1.25039 0.96161 0.97536 0.95841 1.69978 1.45117 1.40370 0.98083 0.86560 0.80311 0.83247 0.78021 1.19776 1.21015 1.21047 1.84062 1.11072 0.97282 1.68127 1.76677 1.00161 1.26495 1.25589 0.89830 0.90002 0.90462 0.82461 0.93133 0.88420 0.95394 0.90010 0.91718 0.94755 0.90736 0.91591 0.92451 0.93665 0.93423 0.96602 0.96744 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.27 36.00 0.37 -0.20 16 2 C 0.12 1.19 6.71 -83.49 -0.56 0.63 16 3 C -0.19 -1.86 9.91 -40.84 -0.40 -2.27 16 4 C -0.15 -1.57 5.32 -35.41 -0.19 -1.76 16 5 C 0.13 1.27 5.54 -4.98 -0.03 1.24 16 6 N -0.54 -6.62 4.75 -244.38 -1.16 -7.78 16 7 C 0.01 0.15 9.13 60.06 0.55 0.70 16 8 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 9 C -0.11 -1.90 5.15 -26.73 -0.14 -2.04 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 12 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 S 0.24 2.59 22.38 -107.50 -2.41 0.19 16 21 N -0.47 -5.61 12.05 32.03 0.39 -5.22 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 26 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 27 H 0.10 0.87 7.93 -51.93 -0.41 0.46 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 1.04 6.30 -51.93 -0.33 0.71 16 30 H 0.06 0.74 6.14 -51.93 -0.32 0.43 16 31 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.07 0.94 7.93 -51.93 -0.41 0.52 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.97 6.47 -51.93 -0.34 0.63 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -31.55 333.39 -9.97 -41.52 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -6.42 Total: -5.45 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.11 Total: -18.53 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.04 Total: -39.49 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.41 Total: 0.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.55 -9.97 -41.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404438254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.585 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds