Wall clock time and date at job start Mon Mar 30 2020 07:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37812 * 121.55822 * 2 1 4 4 C 1.35144 * 114.75987 * 180.02562 * 3 2 1 5 5 C 1.50693 * 127.24907 * 180.26620 * 4 3 2 6 6 N 1.46899 * 109.47479 * 89.70172 * 5 4 3 7 7 C 1.46899 * 111.00096 * 66.04572 * 6 5 4 8 8 C 1.46895 * 110.99894 * 190.00157 * 6 5 4 9 9 C 1.53008 * 109.46983 * 169.99794 * 8 6 5 10 10 C 1.53000 * 109.47056 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46926 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47180 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99975 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00444 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99861 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00364 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47247 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47123 * 120.00066 * 16 14 12 19 19 H 1.48511 * 109.46895 * 239.99952 * 16 14 12 20 20 S 1.72059 * 105.50009 * 359.97438 * 4 3 2 21 21 N 1.30078 * 121.55914 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.47174 * 269.97482 * 1 2 3 23 23 H 1.09002 * 109.47372 * 29.98233 * 1 2 3 24 24 H 1.09007 * 109.47346 * 149.97629 * 1 2 3 25 25 H 1.07992 * 122.62094 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.47118 * 209.70556 * 5 4 3 27 27 H 1.09000 * 109.46923 * 329.69577 * 5 4 3 28 28 H 1.08995 * 109.47000 * 59.99833 * 7 6 5 29 29 H 1.08998 * 109.47028 * 180.02562 * 7 6 5 30 30 H 1.09007 * 109.46807 * 300.00373 * 7 6 5 31 31 H 1.08997 * 109.47325 * 289.99879 * 8 6 5 32 32 H 1.08998 * 109.47737 * 50.00205 * 8 6 5 33 33 H 1.08997 * 109.47159 * 300.00186 * 9 8 6 34 34 H 1.09001 * 109.46570 * 60.00214 * 9 8 6 35 35 H 1.09001 * 109.47092 * 300.00109 * 10 9 8 36 36 H 1.08996 * 109.47060 * 59.99882 * 10 9 8 37 37 H 1.09001 * 109.47136 * 299.99852 * 11 10 9 38 38 H 1.08996 * 109.47535 * 59.99943 * 11 10 9 39 39 H 0.96998 * 120.00160 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2282 1.1743 0.0000 4 6 3.5702 1.0143 -0.0005 5 6 4.6179 2.0974 0.0049 6 7 4.9529 2.4478 1.3916 7 6 5.6081 1.3244 2.0747 8 6 5.7888 3.6546 1.4423 9 6 5.9099 4.1305 2.8915 10 6 6.7811 5.3872 2.9445 11 6 6.9027 5.8627 4.3936 12 6 7.7602 7.1008 4.4457 13 1 8.1772 7.5076 3.5363 14 6 8.0125 7.7143 5.6544 15 7 7.5044 7.2193 6.7619 16 14 9.0761 9.2486 5.7191 17 1 9.5229 9.5995 4.3471 18 1 8.2891 10.3728 6.2867 19 1 10.2623 8.9928 6.5753 20 16 3.8305 -0.6864 -0.0003 21 7 2.1878 -1.1084 0.0005 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3634 0.8901 -0.5136 24 1 -0.3634 -0.8898 -0.5142 25 1 1.7578 2.1464 0.0004 26 1 5.5121 1.7405 -0.5060 27 1 4.2328 2.9779 -0.5095 28 1 6.5265 1.0647 1.5482 29 1 5.8449 1.6106 3.0995 30 1 4.9387 0.4642 2.0835 31 1 6.7802 3.4267 1.0507 32 1 5.3315 4.4391 0.8394 33 1 4.9186 4.3584 3.2831 34 1 6.3673 3.3461 3.4944 35 1 7.7724 5.1588 2.5530 36 1 6.3242 6.1717 2.3413 37 1 5.9115 6.0909 4.7854 38 1 7.3598 5.0780 4.9964 39 1 7.6816 7.6510 7.6122 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404438254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:30 Heat of formation + Delta-G solvation = 1.061605 kcal Electronic energy + Delta-G solvation = -17384.831567 eV Core-core repulsion = 14645.500882 eV Total energy + Delta-G solvation = -2739.330685 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21884 -38.89480 -36.27688 -34.41649 -32.89610 -30.48781 -30.29206 -28.47557 -27.19514 -25.08508 -22.89079 -21.94779 -21.57728 -20.39938 -18.89442 -18.40607 -16.96298 -16.66049 -16.40091 -16.20998 -15.68269 -15.35670 -15.13480 -14.45683 -14.17790 -13.98871 -13.79998 -13.57123 -13.30008 -13.24433 -13.02314 -12.95149 -12.82860 -12.63320 -12.26646 -12.21143 -11.95585 -11.85300 -11.43476 -11.31136 -11.25561 -11.01945 -10.55002 -10.51058 -9.56396 -9.35456 -8.19087 -6.30365 -0.30424 0.50826 0.88861 1.40448 1.40647 1.47815 1.54162 2.41569 2.94790 3.13901 3.45830 3.96982 4.01829 4.16973 4.20126 4.29870 4.37662 4.47879 4.51222 4.58569 4.63477 4.69638 4.75601 4.85305 4.87715 4.92863 4.94472 5.04157 5.24128 5.26036 5.30057 5.39237 5.57559 5.73761 5.79665 5.88642 5.98279 6.01788 6.27181 6.88013 7.39148 8.93051 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044708 B = 0.002673 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.132775 B =10473.111225 C =10639.583048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.115 3.885 3 C -0.191 4.191 4 C -0.153 4.153 5 C 0.127 3.873 6 N -0.546 5.546 7 C 0.014 3.986 8 C 0.068 3.932 9 C -0.104 4.104 10 C -0.096 4.096 11 C 0.022 3.978 12 C -0.542 4.542 13 H 0.061 0.939 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.966 3.034 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.279 1.279 20 S 0.224 5.776 21 N -0.499 5.499 22 H 0.091 0.909 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.177 0.823 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.055 0.945 37 H -0.012 1.012 38 H -0.013 1.013 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 -13.674 -17.396 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.225 4.225 4 C -0.283 4.283 5 C -0.002 4.002 6 N -0.271 5.271 7 C -0.134 4.134 8 C -0.059 4.059 9 C -0.142 4.142 10 C -0.134 4.134 11 C -0.015 4.015 12 C -0.580 4.580 13 H 0.079 0.921 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.790 3.210 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.205 1.205 20 S 0.379 5.621 21 N -0.321 5.321 22 H 0.109 0.891 23 H 0.123 0.877 24 H 0.097 0.903 25 H 0.194 0.806 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.007 0.993 38 H 0.006 0.994 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.322 -15.615 -16.994 25.281 hybrid contribution 0.457 2.013 0.340 2.092 sum -9.865 -13.601 -16.654 23.657 Atomic orbital electron populations 1.20701 0.84322 1.05011 1.04485 1.22062 1.00635 0.88006 0.95601 1.21408 0.92311 1.01455 1.07373 1.25452 0.99085 1.00459 1.03333 1.20572 0.94347 0.95399 0.89905 1.61939 1.45561 1.04901 1.14670 1.22559 0.97468 0.93622 0.99792 1.22077 0.95345 0.91535 0.96966 1.21505 0.99594 0.96828 0.96320 1.21389 0.98631 0.96324 0.97028 1.19027 0.94756 0.94582 0.93136 1.21783 1.31073 1.11697 0.93409 0.92063 1.26028 0.97562 1.01163 0.95406 1.70116 1.46548 1.42150 0.98814 0.85389 0.78271 0.78711 0.78612 1.18409 1.20363 1.20455 1.84029 1.11149 0.98109 1.68822 1.76693 1.00659 1.27675 1.27057 0.89091 0.87694 0.90323 0.80563 0.92086 0.86717 0.94458 0.91390 0.91530 0.93961 0.89314 0.92709 0.93132 0.93079 0.92670 0.99311 0.99448 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.27 71.23 0.73 -0.23 16 2 C 0.11 2.16 6.71 42.72 0.29 2.45 16 3 C -0.19 -3.39 9.91 21.46 0.21 -3.18 16 4 C -0.15 -2.94 5.32 24.97 0.13 -2.81 16 5 C 0.13 2.26 5.54 85.56 0.47 2.73 16 6 N -0.55 -12.47 4.75 -927.07 -4.41 -16.88 16 7 C 0.01 0.32 9.13 127.69 1.17 1.49 16 8 C 0.07 1.67 4.96 86.31 0.43 2.10 16 9 C -0.10 -3.43 5.15 30.60 0.16 -3.27 16 10 C -0.10 -3.82 5.15 30.59 0.16 -3.67 16 11 C 0.02 1.18 4.97 29.85 0.15 1.33 16 12 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 15 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 16 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 S 0.22 4.71 22.38 -56.49 -1.26 3.44 16 21 N -0.50 -11.68 12.05 -52.59 -0.63 -12.31 16 22 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.10 0.71 8.11 -2.39 -0.02 0.69 16 24 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 27 H 0.11 1.66 7.93 -2.39 -0.02 1.65 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.72 6.30 -2.39 -0.02 1.71 16 30 H 0.07 1.49 6.14 -2.38 -0.01 1.48 16 31 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 32 H 0.09 1.96 7.93 -2.39 -0.02 1.94 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.71 6.47 -2.39 -0.02 1.70 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -68.10 333.39 1.60 -66.50 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.01 Total: 4.02 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 4.59 Total: -33.73 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -4.76 Total: -86.71 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.26 Total: 3.44 kcal Total: -68.10 1.60 -66.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404438254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.560 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds