Wall clock time and date at job start Mon Mar 30 2020 07:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 120.00275 * 2 1 4 4 C 1.38238 * 120.00080 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00127 * 359.95169 * 4 3 2 6 6 C 1.50696 * 120.00306 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47000 * 89.99852 * 6 5 4 8 8 C 1.39078 * 120.00048 * 179.97438 * 7 6 5 9 9 C 1.38744 * 119.65740 * 0.02562 * 8 7 6 10 10 C 1.40787 * 118.66836 * 179.72370 * 9 8 7 11 11 C 1.41555 * 120.99237 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99713 * 23.17722 * 11 10 9 13 13 C 1.40020 * 119.99910 * 203.17360 * 11 10 9 14 14 N 1.30748 * 120.00106 * 17.31034 * 13 11 10 15 15 Si 1.86801 * 120.00074 * 197.30983 * 13 11 10 16 16 H 1.48506 * 109.46877 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47205 * 119.99638 * 15 13 11 18 18 H 1.48501 * 109.47271 * 240.00248 * 15 13 11 19 19 C 1.41183 * 118.01261 * 359.97438 * 10 9 8 20 20 C 1.36557 * 119.14971 * 359.97438 * 19 10 9 21 21 N 1.32093 * 121.26335 * 0.02562 * 20 19 10 22 22 C 1.38245 * 119.99873 * 0.27909 * 5 4 3 23 23 C 1.38236 * 119.99857 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47565 * 90.00248 * 1 2 3 25 25 H 1.09000 * 109.47279 * 210.00651 * 1 2 3 26 26 H 1.09005 * 109.46924 * 329.99844 * 1 2 3 27 27 H 1.07998 * 120.00161 * 359.97438 * 3 2 1 28 28 H 1.07994 * 119.99818 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.46927 * 330.00135 * 6 5 4 30 30 H 1.08997 * 109.47640 * 209.99930 * 6 5 4 31 31 H 0.97001 * 120.00071 * 0.02562 * 7 6 5 32 32 H 1.08001 * 120.66797 * 359.73677 * 9 8 7 33 33 H 0.96999 * 120.00193 * 180.02562 * 14 13 11 34 34 H 1.08003 * 120.42495 * 179.97438 * 19 10 9 35 35 H 1.07992 * 119.36675 * 180.02562 * 20 19 10 36 36 H 1.07991 * 119.99725 * 179.72645 * 22 5 4 37 37 H 1.08000 * 120.00335 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 6 5.7787 -0.0002 -0.0001 7 7 6.2670 0.0004 1.3812 8 6 7.6343 -0.0001 1.6353 9 6 8.5297 -0.0006 0.5754 10 6 9.9092 0.0048 0.8566 11 6 10.8657 0.0040 -0.1869 12 1 10.5956 0.3677 -1.1674 13 6 12.1620 -0.4682 0.0521 14 7 12.4049 -1.2088 1.1019 15 14 13.5446 -0.0400 -1.1289 16 1 13.0122 0.8034 -2.2292 17 1 14.6039 0.7046 -0.4019 18 1 14.1164 -1.2882 -1.6949 19 6 10.3100 0.0111 2.2103 20 6 9.3552 0.0121 3.1867 21 7 8.0687 0.0069 2.8874 22 6 3.5805 -1.1973 -0.0049 23 6 2.1981 -1.1972 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6583 2.1325 -0.0004 28 1 4.1206 2.1323 -0.0010 29 1 6.1421 0.8897 -0.5143 30 1 6.1421 -0.8903 -0.5135 31 1 5.6366 0.0004 2.1184 32 1 8.1755 -0.0049 -0.4449 33 1 13.3030 -1.5356 1.2677 34 1 11.3582 0.0149 2.4703 35 1 9.6579 0.0173 4.2233 36 1 4.1205 -2.1325 -0.0090 37 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545928065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:20 Heat of formation + Delta-G solvation = 43.799150 kcal Electronic energy + Delta-G solvation = -18644.658101 eV Core-core repulsion = 15771.736704 eV Total energy + Delta-G solvation = -2872.921397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.54530 -38.33007 -35.43596 -33.96881 -32.52603 -30.95730 -30.58105 -28.94484 -26.99854 -25.85665 -24.21533 -22.73525 -21.47464 -20.86388 -20.40419 -17.64871 -16.46881 -15.62381 -15.56404 -15.16187 -14.94216 -14.74731 -13.99935 -13.84355 -13.52866 -13.38012 -13.35947 -13.09898 -12.49731 -12.41850 -12.23412 -11.96191 -11.87840 -11.37480 -11.16330 -10.99343 -10.96708 -10.81150 -10.26058 -9.80413 -9.39912 -8.96142 -8.89647 -8.61594 -7.93423 -7.86909 -6.81544 -6.42776 -4.53074 1.23128 1.38132 2.80481 3.05135 3.09580 3.11076 3.38009 3.61592 3.89669 4.36155 4.71970 4.72647 4.76179 4.93973 5.00159 5.14004 5.38852 5.45482 5.58431 5.62317 5.75905 5.87357 5.88863 6.07116 6.09338 6.18370 6.36535 6.52085 6.68232 6.79912 6.93255 6.95690 6.99875 7.03718 7.30497 7.59094 7.86801 8.08001 8.13688 8.47810 8.74460 8.86430 8.93872 9.81692 10.13162 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033991 B = 0.003441 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.546316 B = 8136.073979 C = 8583.505338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.097 4.097 5 C -0.099 4.099 6 C 0.181 3.819 7 N -0.740 5.740 8 C 0.398 3.602 9 C -0.336 4.336 10 C 0.156 3.844 11 C -0.456 4.456 12 H 0.079 0.921 13 C 0.079 3.921 14 N -0.784 5.784 15 Si 0.909 3.091 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.247 4.247 20 C 0.116 3.884 21 N -0.625 5.625 22 C -0.097 4.097 23 C -0.125 4.125 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.390 0.610 32 H 0.097 0.903 33 H 0.281 0.719 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 1.583 -3.517 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.115 4.115 5 C -0.100 4.100 6 C 0.056 3.944 7 N -0.377 5.377 8 C 0.167 3.833 9 C -0.363 4.363 10 C 0.147 3.853 11 C -0.487 4.487 12 H 0.098 0.902 13 C -0.141 4.141 14 N -0.409 5.409 15 Si 0.733 3.267 16 H -0.183 1.183 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.271 4.271 20 C -0.033 4.033 21 N -0.348 5.348 22 C -0.115 4.115 23 C -0.143 4.143 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.224 0.776 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.644 1.448 -2.906 15.977 hybrid contribution 1.154 0.041 -0.899 1.463 sum -14.490 1.488 -3.804 15.055 Atomic orbital electron populations 1.20783 0.91402 1.02659 1.02165 1.19930 0.95942 0.93321 0.99700 1.21008 0.94132 0.97440 1.01732 1.21126 0.94036 0.97862 0.98520 1.20032 0.95666 0.93304 1.00994 1.19960 0.87843 1.01719 0.84898 1.44101 1.03482 1.84871 1.05253 1.17934 0.83443 0.92005 0.89888 1.21125 0.93394 1.25429 0.96366 1.17604 0.90752 0.84127 0.92773 1.19613 0.94394 1.36995 0.97720 0.90243 1.25968 1.00042 0.92346 0.95720 1.69819 1.22752 1.22835 1.25461 0.86249 0.80272 0.79277 0.80862 1.18310 1.19595 1.19923 1.21785 1.00000 1.12057 0.93269 1.21352 0.87645 0.96548 0.97778 1.66735 1.18387 1.30059 1.19627 1.21141 0.94044 0.97897 0.98441 1.21013 0.94135 0.97451 1.01690 0.91296 0.91641 0.91648 0.86185 0.85810 0.92017 0.91963 0.77634 0.88507 0.90793 0.85911 0.86473 0.85779 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.09 -0.93 5.88 -104.63 -0.62 -1.55 16 3 C -0.13 -1.37 9.70 -39.58 -0.38 -1.76 16 4 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 5 C -0.10 -1.36 5.25 -104.62 -0.55 -1.91 16 6 C 0.18 2.92 5.02 -5.20 -0.03 2.90 16 7 N -0.74 -14.35 5.72 -61.66 -0.35 -14.70 16 8 C 0.40 9.55 7.65 -154.98 -1.19 8.37 16 9 C -0.34 -8.52 9.12 -38.43 -0.35 -8.87 16 10 C 0.16 4.25 5.61 -106.55 -0.60 3.65 16 11 C -0.46 -12.16 9.12 -37.65 -0.34 -12.50 16 12 H 0.08 2.03 7.91 -52.48 -0.41 1.62 16 13 C 0.08 1.97 5.19 -17.35 -0.09 1.88 16 14 N -0.78 -20.15 10.90 55.55 0.61 -19.55 16 15 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 16 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 C -0.25 -6.58 8.75 -39.07 -0.34 -6.92 16 20 C 0.12 2.91 11.10 -18.05 -0.20 2.71 16 21 N -0.62 -15.71 10.36 -12.82 -0.13 -15.84 16 22 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 23 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.06 1.00 7.88 -51.93 -0.41 0.59 16 30 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 31 H 0.39 7.22 8.59 -40.82 -0.35 6.87 16 32 H 0.10 2.30 6.71 -52.49 -0.35 1.94 16 33 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 34 H 0.12 3.32 6.16 -52.48 -0.32 2.99 16 35 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -29.38 317.41 -10.37 -39.75 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.77 Total: 11.61 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -5.48 Total: -19.46 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.12 Total: -50.09 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.38 -10.37 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545928065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.552 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds