Wall clock time and date at job start Mon Mar 30 2020 07:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 120.00275 * 2 1 4 4 C 1.38238 * 120.00080 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00127 * 359.95169 * 4 3 2 6 6 C 1.50696 * 120.00306 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47000 * 89.99852 * 6 5 4 8 8 C 1.39078 * 120.00048 * 179.97438 * 7 6 5 9 9 C 1.38744 * 119.65740 * 0.02562 * 8 7 6 10 10 C 1.40787 * 118.66836 * 179.72370 * 9 8 7 11 11 C 1.41555 * 120.99237 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99713 * 23.17722 * 11 10 9 13 13 C 1.40020 * 119.99910 * 203.17360 * 11 10 9 14 14 N 1.30748 * 120.00106 * 17.31034 * 13 11 10 15 15 Si 1.86801 * 120.00074 * 197.30983 * 13 11 10 16 16 H 1.48506 * 109.46877 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47205 * 119.99638 * 15 13 11 18 18 H 1.48501 * 109.47271 * 240.00248 * 15 13 11 19 19 C 1.41183 * 118.01261 * 359.97438 * 10 9 8 20 20 C 1.36557 * 119.14971 * 359.97438 * 19 10 9 21 21 N 1.32093 * 121.26335 * 0.02562 * 20 19 10 22 22 C 1.38245 * 119.99873 * 0.27909 * 5 4 3 23 23 C 1.38236 * 119.99857 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47565 * 90.00248 * 1 2 3 25 25 H 1.09000 * 109.47279 * 210.00651 * 1 2 3 26 26 H 1.09005 * 109.46924 * 329.99844 * 1 2 3 27 27 H 1.07998 * 120.00161 * 359.97438 * 3 2 1 28 28 H 1.07994 * 119.99818 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.46927 * 330.00135 * 6 5 4 30 30 H 1.08997 * 109.47640 * 209.99930 * 6 5 4 31 31 H 0.97001 * 120.00071 * 0.02562 * 7 6 5 32 32 H 1.08001 * 120.66797 * 359.73677 * 9 8 7 33 33 H 0.96999 * 120.00193 * 180.02562 * 14 13 11 34 34 H 1.08003 * 120.42495 * 179.97438 * 19 10 9 35 35 H 1.07992 * 119.36675 * 180.02562 * 20 19 10 36 36 H 1.07991 * 119.99725 * 179.72645 * 22 5 4 37 37 H 1.08000 * 120.00335 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 6 5.7787 -0.0002 -0.0001 7 7 6.2670 0.0004 1.3812 8 6 7.6343 -0.0001 1.6353 9 6 8.5297 -0.0006 0.5754 10 6 9.9092 0.0048 0.8566 11 6 10.8657 0.0040 -0.1869 12 1 10.5956 0.3677 -1.1674 13 6 12.1620 -0.4682 0.0521 14 7 12.4049 -1.2088 1.1019 15 14 13.5446 -0.0400 -1.1289 16 1 13.0122 0.8034 -2.2292 17 1 14.6039 0.7046 -0.4019 18 1 14.1164 -1.2882 -1.6949 19 6 10.3100 0.0111 2.2103 20 6 9.3552 0.0121 3.1867 21 7 8.0687 0.0069 2.8874 22 6 3.5805 -1.1973 -0.0049 23 6 2.1981 -1.1972 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6583 2.1325 -0.0004 28 1 4.1206 2.1323 -0.0010 29 1 6.1421 0.8897 -0.5143 30 1 6.1421 -0.8903 -0.5135 31 1 5.6366 0.0004 2.1184 32 1 8.1755 -0.0049 -0.4449 33 1 13.3030 -1.5356 1.2677 34 1 11.3582 0.0149 2.4703 35 1 9.6579 0.0173 4.2233 36 1 4.1205 -2.1325 -0.0090 37 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545928065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:19 Heat of formation + Delta-G solvation = 28.836293 kcal Electronic energy + Delta-G solvation = -18645.306939 eV Core-core repulsion = 15771.736704 eV Total energy + Delta-G solvation = -2873.570235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63312 -40.07454 -36.95761 -35.77271 -33.69605 -32.54969 -31.85248 -30.40655 -28.34478 -27.83223 -25.42060 -23.63463 -23.24681 -22.64253 -21.57260 -19.51638 -18.00042 -17.16042 -16.60777 -16.55236 -16.54340 -15.99734 -15.73827 -15.17376 -14.94914 -14.69966 -14.50254 -14.31712 -14.22257 -13.73247 -13.43689 -13.14135 -12.92420 -12.89054 -12.82771 -12.69179 -11.97867 -11.94264 -11.86766 -11.75546 -11.25920 -10.67881 -9.93955 -9.85351 -9.85068 -9.53122 -8.70846 -8.25553 -6.55509 0.28706 0.47755 0.96770 1.17960 1.39344 1.54900 1.59809 2.19439 2.47711 2.80071 2.99914 3.72793 3.80542 3.90403 4.07950 4.12754 4.23362 4.29312 4.54058 4.65243 4.67661 4.86174 4.86467 4.89803 4.94672 4.99450 5.04949 5.15067 5.17694 5.28386 5.31177 5.46556 5.61839 5.67451 5.69178 5.90674 6.08499 6.11363 6.36502 6.54255 6.86256 6.89255 7.03825 7.87330 8.26786 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033991 B = 0.003441 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.546316 B = 8136.073979 C = 8583.505338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.106 4.106 5 C -0.116 4.116 6 C 0.184 3.816 7 N -0.728 5.728 8 C 0.398 3.602 9 C -0.356 4.356 10 C 0.128 3.872 11 C -0.488 4.488 12 H 0.079 0.921 13 C 0.038 3.962 14 N -0.811 5.811 15 Si 0.988 3.012 16 H -0.257 1.257 17 H -0.261 1.261 18 H -0.263 1.263 19 C -0.272 4.272 20 C 0.117 3.883 21 N -0.636 5.636 22 C -0.107 4.107 23 C -0.129 4.129 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.143 0.857 28 H 0.125 0.875 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.396 0.604 32 H 0.103 0.897 33 H 0.292 0.708 34 H 0.113 0.887 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 1.782 -4.156 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.060 3.940 7 N -0.363 5.363 8 C 0.166 3.834 9 C -0.383 4.383 10 C 0.120 3.880 11 C -0.518 4.518 12 H 0.097 0.903 13 C -0.179 4.179 14 N -0.436 5.436 15 Si 0.808 3.192 16 H -0.181 1.181 17 H -0.186 1.186 18 H -0.188 1.188 19 C -0.297 4.297 20 C -0.033 4.033 21 N -0.361 5.361 22 C -0.126 4.126 23 C -0.146 4.146 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.143 0.857 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.032 1.641 -3.549 17.475 hybrid contribution 1.431 -0.051 -0.679 1.585 sum -15.601 1.590 -4.228 16.241 Atomic orbital electron populations 1.20851 0.89006 1.03775 1.03266 1.20351 0.97730 0.92810 0.97775 1.21303 0.93504 0.98833 1.00956 1.21235 0.95018 0.97429 0.98769 1.19803 0.93830 0.94456 1.03596 1.20003 0.89979 1.01128 0.82932 1.44218 1.01785 1.83389 1.06943 1.18194 0.85169 0.90683 0.89378 1.21232 0.93229 1.26725 0.97134 1.18012 0.91897 0.84642 0.93485 1.19893 0.95844 1.38306 0.97765 0.90279 1.26886 1.02002 0.91430 0.97593 1.69855 1.24050 1.22861 1.26865 0.85073 0.76527 0.79283 0.78296 1.18074 1.18582 1.18791 1.21765 0.99860 1.14379 0.93668 1.21751 0.87529 0.95171 0.98830 1.66885 1.18316 1.30892 1.19997 1.21236 0.95050 0.97448 0.98865 1.21296 0.93482 0.98857 1.01010 0.90057 0.90609 0.90545 0.83894 0.85688 0.92351 0.92663 0.76995 0.87891 0.89696 0.86899 0.83806 0.85909 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.23 0.71 -0.60 16 2 C -0.09 -1.59 5.88 -19.87 -0.12 -1.70 16 3 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 4 C -0.11 -2.55 9.70 22.27 0.22 -2.33 16 5 C -0.12 -3.15 5.25 -19.86 -0.10 -3.25 16 6 C 0.18 6.04 5.02 85.63 0.43 6.47 16 7 N -0.73 -28.46 5.72 -348.98 -2.00 -30.45 16 8 C 0.40 19.42 7.65 132.90 1.02 20.44 16 9 C -0.36 -18.61 9.12 23.01 0.21 -18.40 16 10 C 0.13 7.20 5.61 -21.11 -0.12 7.08 16 11 C -0.49 -26.66 9.12 23.52 0.21 -26.45 16 12 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 13 C 0.04 1.92 5.19 85.29 0.44 2.36 16 14 N -0.81 -42.19 10.90 21.84 0.24 -41.95 16 15 Si 0.99 37.57 29.59 68.60 2.03 39.60 16 16 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 17 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 18 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 19 C -0.27 -14.93 8.75 22.60 0.20 -14.74 16 20 C 0.12 5.92 11.10 84.26 0.94 6.86 16 21 N -0.64 -32.27 10.36 -194.48 -2.02 -34.29 16 22 C -0.11 -2.63 9.70 22.27 0.22 -2.41 16 23 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 26 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 27 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 28 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.06 1.95 7.88 -2.38 -0.02 1.93 16 30 H 0.06 1.89 7.87 -2.39 -0.02 1.87 16 31 H 0.40 14.61 8.59 -92.71 -0.80 13.81 16 32 H 0.10 5.07 6.71 -2.91 -0.02 5.05 16 33 H 0.29 13.51 8.29 -92.71 -0.77 12.74 16 34 H 0.11 6.31 6.16 -2.91 -0.02 6.29 16 35 H 0.14 6.31 8.06 -2.91 -0.02 6.29 16 36 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -63.76 317.41 3.22 -60.54 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: 0.28 Total: 37.90 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 4.68 Total: -31.35 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -3.78 Total: -106.69 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -63.76 3.22 -60.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545928065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.375 kcal (2) G-P(sol) polarization free energy of solvation -63.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds