Wall clock time and date at job start Mon Mar 30 2020 07:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38264 * 120.00102 * 2 1 4 4 C 1.38206 * 119.99953 * 179.80873 * 3 2 1 5 5 C 1.38259 * 120.00067 * 0.39174 * 4 3 2 6 6 C 1.38210 * 119.99742 * 359.86171 * 5 4 3 7 7 C 1.50704 * 119.99490 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47245 * 269.97635 * 7 6 5 9 9 C 1.39080 * 119.99948 * 180.02562 * 8 7 6 10 10 C 1.38744 * 119.66023 * 359.97438 * 9 8 7 11 11 C 1.40773 * 118.66734 * 179.97438 * 10 9 8 12 12 C 1.41562 * 120.99201 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99236 * 23.17494 * 12 11 10 14 14 C 1.40023 * 119.99954 * 203.17820 * 12 11 10 15 15 N 1.30738 * 120.00355 * 17.29849 * 14 12 11 16 16 Si 1.86803 * 119.99697 * 197.29366 * 14 12 11 17 17 H 1.48507 * 109.47107 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46910 * 119.99918 * 16 14 12 19 19 H 1.48492 * 109.47307 * 240.00119 * 16 14 12 20 20 C 1.41186 * 118.01988 * 0.02562 * 11 10 9 21 21 C 1.36556 * 119.14117 * 359.97438 * 20 11 10 22 22 N 1.32098 * 121.27014 * 359.72430 * 21 20 11 23 23 C 1.38208 * 120.00079 * 180.26646 * 2 1 3 24 24 H 1.08993 * 109.47534 * 269.72925 * 1 2 3 25 25 H 1.09001 * 109.46790 * 29.73400 * 1 2 3 26 26 H 1.08999 * 109.46923 * 149.72653 * 1 2 3 27 27 H 1.07999 * 119.99726 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.00033 * 180.23031 * 4 3 2 29 29 H 1.07997 * 119.99466 * 179.83302 * 5 4 3 30 30 H 1.08996 * 109.47343 * 29.98272 * 7 6 5 31 31 H 1.09005 * 109.46830 * 149.97824 * 7 6 5 32 32 H 0.96999 * 119.99884 * 0.02562 * 8 7 6 33 33 H 1.07998 * 120.66388 * 0.02766 * 10 9 8 34 34 H 0.96999 * 120.00343 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.42774 * 180.02562 * 20 11 10 36 36 H 1.08004 * 119.36658 * 180.02562 * 21 20 11 37 37 H 1.08001 * 120.00066 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1974 0.0040 5 6 4.2717 0.0000 -0.0002 6 6 3.5806 -1.1969 -0.0055 7 6 4.3342 -2.5020 -0.0106 8 7 4.5785 -2.9194 -1.3935 9 6 5.2617 -4.1028 -1.6522 10 6 5.7094 -4.8823 -0.5954 11 6 6.3982 -6.0763 -0.8812 12 6 6.8769 -6.9086 0.1590 13 1 6.4244 -6.8628 1.1386 14 6 7.9370 -7.7911 -0.0822 15 7 8.7017 -7.6236 -1.1292 16 14 8.2586 -9.2076 1.0924 17 1 7.2587 -9.1774 2.1900 18 1 8.1485 -10.4938 0.3585 19 1 9.6237 -9.0780 1.6622 20 6 6.5983 -6.4184 -2.2363 21 6 6.1210 -5.5877 -3.2094 22 7 5.4734 -4.4771 -2.9059 23 6 2.1981 -1.1969 -0.0056 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3633 0.8924 -0.5097 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6583 2.1327 -0.0004 28 1 4.1204 2.1326 0.0078 29 1 5.3517 0.0001 0.0002 30 1 5.2865 -2.3737 0.5038 31 1 3.7450 -3.2637 0.5001 32 1 4.2636 -2.3704 -2.1286 33 1 5.5321 -4.5796 0.4260 34 1 9.4358 -8.2352 -1.2965 35 1 7.1214 -7.3258 -2.4999 36 1 6.2717 -5.8461 -4.2472 37 1 1.6581 -2.1322 -0.0095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545928598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:23 Heat of formation + Delta-G solvation = 43.846019 kcal Electronic energy + Delta-G solvation = -18713.264964 eV Core-core repulsion = 15840.345599 eV Total energy + Delta-G solvation = -2872.919365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.55337 -38.32813 -35.35523 -33.92562 -32.69439 -31.28275 -30.56117 -28.07581 -26.99559 -25.86387 -25.27681 -22.18288 -21.48647 -20.85579 -20.20849 -17.63607 -16.60369 -15.92158 -15.54135 -15.19439 -14.90958 -14.58928 -13.99017 -13.83168 -13.49454 -13.36101 -13.20729 -13.06935 -12.52225 -12.38039 -12.28692 -11.97580 -11.90475 -11.37738 -11.15902 -11.04970 -10.92370 -10.80256 -10.26216 -9.80853 -9.40052 -8.92336 -8.86219 -8.67065 -7.93293 -7.87372 -6.81724 -6.43014 -4.53237 1.26028 1.35334 2.80406 3.05101 3.09431 3.11046 3.37891 3.62100 3.89596 4.35073 4.71433 4.74249 4.75483 4.88240 5.10088 5.23484 5.40754 5.45757 5.52957 5.66259 5.76092 5.86502 5.88538 6.06162 6.11901 6.18063 6.41663 6.51093 6.67224 6.79607 6.93078 6.95582 6.99765 7.03533 7.30313 7.58922 7.86602 8.07815 8.13322 8.47618 8.74190 8.86285 8.93654 9.81450 10.13051 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029726 B = 0.003581 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.704248 B = 7818.032205 C = 8154.959595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.106 4.106 6 C -0.090 4.090 7 C 0.180 3.820 8 N -0.740 5.740 9 C 0.398 3.602 10 C -0.336 4.336 11 C 0.156 3.844 12 C -0.457 4.457 13 H 0.079 0.921 14 C 0.079 3.921 15 N -0.783 5.783 16 Si 0.909 3.091 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.274 1.274 20 C -0.246 4.246 21 C 0.116 3.884 22 N -0.624 5.624 23 C -0.101 4.101 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.390 0.610 33 H 0.097 0.903 34 H 0.281 0.719 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 11.459 3.543 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.125 4.125 6 C -0.091 4.091 7 C 0.055 3.945 8 N -0.377 5.377 9 C 0.167 3.833 10 C -0.363 4.363 11 C 0.148 3.852 12 C -0.488 4.488 13 H 0.098 0.902 14 C -0.140 4.140 15 N -0.409 5.409 16 Si 0.733 3.267 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.199 1.199 20 C -0.271 4.271 21 C -0.033 4.033 22 N -0.348 5.348 23 C -0.120 4.120 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.224 0.776 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.607 11.852 2.932 15.536 hybrid contribution 0.579 -0.958 0.897 1.434 sum -9.028 10.895 3.829 14.658 Atomic orbital electron populations 1.20779 0.91276 1.02729 1.02214 1.19910 0.96034 0.93144 1.00183 1.21017 0.94293 0.97347 1.01244 1.21116 0.94263 0.97944 1.00543 1.21138 1.00172 0.91864 0.99315 1.20029 0.93774 0.95117 1.00135 1.19969 0.98280 0.91314 0.84901 1.44088 1.64530 1.23864 1.05204 1.17936 0.89845 0.85604 0.89889 1.21125 1.18791 1.00034 0.96389 1.17601 0.86159 0.88719 0.92761 1.19620 1.13997 1.17281 0.97872 0.90241 1.25964 0.94646 0.97754 0.95685 1.69815 1.12332 1.33240 1.25468 0.86250 0.78956 0.80616 0.80846 1.18309 1.19599 1.19913 1.21783 1.09008 1.03018 0.93262 1.21356 0.94132 0.90059 0.97788 1.66742 1.26885 1.21697 1.19458 1.21020 0.93579 0.97724 0.99675 0.91276 0.91706 0.91475 0.86346 0.86107 0.85830 0.91903 0.92010 0.77624 0.88502 0.90789 0.85914 0.86473 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.09 -1.03 5.88 -104.62 -0.62 -1.64 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 4 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 5 C -0.11 -1.34 9.70 -39.58 -0.38 -1.73 16 6 C -0.09 -1.24 5.25 -104.62 -0.55 -1.78 16 7 C 0.18 2.92 5.02 -5.19 -0.03 2.89 16 8 N -0.74 -14.34 5.72 -61.65 -0.35 -14.69 16 9 C 0.40 9.55 7.65 -154.98 -1.19 8.36 16 10 C -0.34 -8.53 9.12 -38.44 -0.35 -8.88 16 11 C 0.16 4.25 5.61 -106.55 -0.60 3.65 16 12 C -0.46 -12.17 9.12 -37.65 -0.34 -12.51 16 13 H 0.08 2.03 7.91 -52.48 -0.41 1.62 16 14 C 0.08 1.97 5.20 -17.35 -0.09 1.88 16 15 N -0.78 -20.13 10.90 55.55 0.61 -19.52 16 16 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 C -0.25 -6.56 8.75 -39.07 -0.34 -6.90 16 21 C 0.12 2.90 11.10 -18.04 -0.20 2.70 16 22 N -0.62 -15.68 10.37 -12.82 -0.13 -15.82 16 23 C -0.10 -1.28 9.36 -39.59 -0.37 -1.65 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 31 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 32 H 0.39 7.22 8.59 -40.82 -0.35 6.87 16 33 H 0.10 2.30 6.71 -52.49 -0.35 1.95 16 34 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 35 H 0.12 3.31 6.16 -52.49 -0.32 2.99 16 36 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -29.33 317.41 -10.37 -39.70 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -4.77 Total: 11.71 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -5.48 Total: -19.56 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.12 Total: -50.03 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.33 -10.37 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545928598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.550 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds