Wall clock time and date at job start Mon Mar 30 2020 07:38:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38264 * 120.00102 * 2 1
4 4 C 1.38206 * 119.99953 * 179.80873 * 3 2 1
5 5 C 1.38259 * 120.00067 * 0.39174 * 4 3 2
6 6 C 1.38210 * 119.99742 * 359.86171 * 5 4 3
7 7 C 1.50704 * 119.99490 * 179.97438 * 6 5 4
8 8 N 1.46496 * 109.47245 * 269.97635 * 7 6 5
9 9 C 1.39080 * 119.99948 * 180.02562 * 8 7 6
10 10 C 1.38744 * 119.66023 * 359.97438 * 9 8 7
11 11 C 1.40773 * 118.66734 * 179.97438 * 10 9 8
12 12 C 1.41562 * 120.99201 * 179.97438 * 11 10 9
13 13 H 1.08007 * 119.99236 * 23.17494 * 12 11 10
14 14 C 1.40023 * 119.99954 * 203.17820 * 12 11 10
15 15 N 1.30738 * 120.00355 * 17.29849 * 14 12 11
16 16 Si 1.86803 * 119.99697 * 197.29366 * 14 12 11
17 17 H 1.48507 * 109.47107 * 0.02562 * 16 14 12
18 18 H 1.48499 * 109.46910 * 119.99918 * 16 14 12
19 19 H 1.48492 * 109.47307 * 240.00119 * 16 14 12
20 20 C 1.41186 * 118.01988 * 0.02562 * 11 10 9
21 21 C 1.36556 * 119.14117 * 359.97438 * 20 11 10
22 22 N 1.32098 * 121.27014 * 359.72430 * 21 20 11
23 23 C 1.38208 * 120.00079 * 180.26646 * 2 1 3
24 24 H 1.08993 * 109.47534 * 269.72925 * 1 2 3
25 25 H 1.09001 * 109.46790 * 29.73400 * 1 2 3
26 26 H 1.08999 * 109.46923 * 149.72653 * 1 2 3
27 27 H 1.07999 * 119.99726 * 359.97438 * 3 2 1
28 28 H 1.08000 * 120.00033 * 180.23031 * 4 3 2
29 29 H 1.07997 * 119.99466 * 179.83302 * 5 4 3
30 30 H 1.08996 * 109.47343 * 29.98272 * 7 6 5
31 31 H 1.09005 * 109.46830 * 149.97824 * 7 6 5
32 32 H 0.96999 * 119.99884 * 0.02562 * 8 7 6
33 33 H 1.07998 * 120.66388 * 0.02766 * 10 9 8
34 34 H 0.96999 * 120.00343 * 180.02562 * 15 14 12
35 35 H 1.08002 * 120.42774 * 180.02562 * 20 11 10
36 36 H 1.08004 * 119.36658 * 180.02562 * 21 20 11
37 37 H 1.08001 * 120.00066 * 359.97438 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1984 1.1974 0.0000
4 6 3.5804 1.1974 0.0040
5 6 4.2717 0.0000 -0.0002
6 6 3.5806 -1.1969 -0.0055
7 6 4.3342 -2.5020 -0.0106
8 7 4.5785 -2.9194 -1.3935
9 6 5.2617 -4.1028 -1.6522
10 6 5.7094 -4.8823 -0.5954
11 6 6.3982 -6.0763 -0.8812
12 6 6.8769 -6.9086 0.1590
13 1 6.4244 -6.8628 1.1386
14 6 7.9370 -7.7911 -0.0822
15 7 8.7017 -7.6236 -1.1292
16 14 8.2586 -9.2076 1.0924
17 1 7.2587 -9.1774 2.1900
18 1 8.1485 -10.4938 0.3585
19 1 9.6237 -9.0780 1.6622
20 6 6.5983 -6.4184 -2.2363
21 6 6.1210 -5.5877 -3.2094
22 7 5.4734 -4.4771 -2.9059
23 6 2.1981 -1.1969 -0.0056
24 1 -0.3634 -0.0049 1.0276
25 1 -0.3633 0.8924 -0.5097
26 1 -0.3633 -0.8875 -0.5181
27 1 1.6583 2.1327 -0.0004
28 1 4.1204 2.1326 0.0078
29 1 5.3517 0.0001 0.0002
30 1 5.2865 -2.3737 0.5038
31 1 3.7450 -3.2637 0.5001
32 1 4.2636 -2.3704 -2.1286
33 1 5.5321 -4.5796 0.4260
34 1 9.4358 -8.2352 -1.2965
35 1 7.1214 -7.3258 -2.4999
36 1 6.2717 -5.8461 -4.2472
37 1 1.6581 -2.1322 -0.0095
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000545928598.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:38:23
Heat of formation + Delta-G solvation = 43.846019 kcal
Electronic energy + Delta-G solvation = -18713.264964 eV
Core-core repulsion = 15840.345599 eV
Total energy + Delta-G solvation = -2872.919365 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.127 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-39.55337 -38.32813 -35.35523 -33.92562 -32.69439 -31.28275 -30.56117 -28.07581
-26.99559 -25.86387 -25.27681 -22.18288 -21.48647 -20.85579 -20.20849 -17.63607
-16.60369 -15.92158 -15.54135 -15.19439 -14.90958 -14.58928 -13.99017 -13.83168
-13.49454 -13.36101 -13.20729 -13.06935 -12.52225 -12.38039 -12.28692 -11.97580
-11.90475 -11.37738 -11.15902 -11.04970 -10.92370 -10.80256 -10.26216 -9.80853
-9.40052 -8.92336 -8.86219 -8.67065 -7.93293 -7.87372 -6.81724 -6.43014
-4.53237 1.26028 1.35334 2.80406 3.05101 3.09431 3.11046 3.37891
3.62100 3.89596 4.35073 4.71433 4.74249 4.75483 4.88240 5.10088
5.23484 5.40754 5.45757 5.52957 5.66259 5.76092 5.86502 5.88538
6.06162 6.11901 6.18063 6.41663 6.51093 6.67224 6.79607 6.93078
6.95582 6.99765 7.03533 7.30313 7.58922 7.86602 8.07815 8.13322
8.47618 8.74190 8.86285 8.93654 9.81450 10.13051
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.029726 B = 0.003581 C = 0.003433
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 941.704248 B = 7818.032205 C = 8154.959595
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.093 4.093
3 C -0.121 4.121
4 C -0.121 4.121
5 C -0.106 4.106
6 C -0.090 4.090
7 C 0.180 3.820
8 N -0.740 5.740
9 C 0.398 3.602
10 C -0.336 4.336
11 C 0.156 3.844
12 C -0.457 4.457
13 H 0.079 0.921
14 C 0.079 3.921
15 N -0.783 5.783
16 Si 0.909 3.091
17 H -0.260 1.260
18 H -0.271 1.271
19 H -0.274 1.274
20 C -0.246 4.246
21 C 0.116 3.884
22 N -0.624 5.624
23 C -0.101 4.101
24 H 0.069 0.931
25 H 0.064 0.936
26 H 0.066 0.934
27 H 0.119 0.881
28 H 0.121 0.879
29 H 0.124 0.876
30 H 0.063 0.937
31 H 0.062 0.938
32 H 0.390 0.610
33 H 0.097 0.903
34 H 0.281 0.719
35 H 0.123 0.877
36 H 0.118 0.882
37 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.526 11.459 3.543 15.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.093 4.093
3 C -0.139 4.139
4 C -0.139 4.139
5 C -0.125 4.125
6 C -0.091 4.091
7 C 0.055 3.945
8 N -0.377 5.377
9 C 0.167 3.833
10 C -0.363 4.363
11 C 0.148 3.852
12 C -0.488 4.488
13 H 0.098 0.902
14 C -0.140 4.140
15 N -0.409 5.409
16 Si 0.733 3.267
17 H -0.183 1.183
18 H -0.196 1.196
19 H -0.199 1.199
20 C -0.271 4.271
21 C -0.033 4.033
22 N -0.348 5.348
23 C -0.120 4.120
24 H 0.087 0.913
25 H 0.083 0.917
26 H 0.085 0.915
27 H 0.137 0.863
28 H 0.139 0.861
29 H 0.142 0.858
30 H 0.081 0.919
31 H 0.080 0.920
32 H 0.224 0.776
33 H 0.115 0.885
34 H 0.092 0.908
35 H 0.141 0.859
36 H 0.135 0.865
37 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -9.607 11.852 2.932 15.536
hybrid contribution 0.579 -0.958 0.897 1.434
sum -9.028 10.895 3.829 14.658
Atomic orbital electron populations
1.20779 0.91276 1.02729 1.02214 1.19910 0.96034 0.93144 1.00183
1.21017 0.94293 0.97347 1.01244 1.21116 0.94263 0.97944 1.00543
1.21138 1.00172 0.91864 0.99315 1.20029 0.93774 0.95117 1.00135
1.19969 0.98280 0.91314 0.84901 1.44088 1.64530 1.23864 1.05204
1.17936 0.89845 0.85604 0.89889 1.21125 1.18791 1.00034 0.96389
1.17601 0.86159 0.88719 0.92761 1.19620 1.13997 1.17281 0.97872
0.90241 1.25964 0.94646 0.97754 0.95685 1.69815 1.12332 1.33240
1.25468 0.86250 0.78956 0.80616 0.80846 1.18309 1.19599 1.19913
1.21783 1.09008 1.03018 0.93262 1.21356 0.94132 0.90059 0.97788
1.66742 1.26885 1.21697 1.19458 1.21020 0.93579 0.97724 0.99675
0.91276 0.91706 0.91475 0.86346 0.86107 0.85830 0.91903 0.92010
0.77624 0.88502 0.90789 0.85914 0.86473 0.85872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16
2 C -0.09 -1.03 5.88 -104.62 -0.62 -1.64 16
3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16
4 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16
5 C -0.11 -1.34 9.70 -39.58 -0.38 -1.73 16
6 C -0.09 -1.24 5.25 -104.62 -0.55 -1.78 16
7 C 0.18 2.92 5.02 -5.19 -0.03 2.89 16
8 N -0.74 -14.34 5.72 -61.65 -0.35 -14.69 16
9 C 0.40 9.55 7.65 -154.98 -1.19 8.36 16
10 C -0.34 -8.53 9.12 -38.44 -0.35 -8.88 16
11 C 0.16 4.25 5.61 -106.55 -0.60 3.65 16
12 C -0.46 -12.17 9.12 -37.65 -0.34 -12.51 16
13 H 0.08 2.03 7.91 -52.48 -0.41 1.62 16
14 C 0.08 1.97 5.20 -17.35 -0.09 1.88 16
15 N -0.78 -20.13 10.90 55.55 0.61 -19.52 16
16 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16
17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16
18 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16
19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16
20 C -0.25 -6.56 8.75 -39.07 -0.34 -6.90 16
21 C 0.12 2.90 11.10 -18.04 -0.20 2.70 16
22 N -0.62 -15.68 10.37 -12.82 -0.13 -15.82 16
23 C -0.10 -1.28 9.36 -39.59 -0.37 -1.65 16
24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
25 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16
26 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16
27 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16
28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16
29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16
30 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16
31 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16
32 H 0.39 7.22 8.59 -40.82 -0.35 6.87 16
33 H 0.10 2.30 6.71 -52.49 -0.35 1.95 16
34 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16
35 H 0.12 3.31 6.16 -52.49 -0.32 2.99 16
36 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16
37 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16
LS Contribution 317.41 15.07 4.78 4.78
Total: -1.00 -29.33 317.41 -10.37 -39.70
By element:
Atomic # 1 Polarization: 16.48 SS G_CDS: -4.77 Total: 11.71 kcal
Atomic # 6 Polarization: -14.08 SS G_CDS: -5.48 Total: -19.56 kcal
Atomic # 7 Polarization: -50.15 SS G_CDS: 0.12 Total: -50.03 kcal
Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -29.33 -10.37 -39.70 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000545928598.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.550 kcal
(2) G-P(sol) polarization free energy of solvation -29.333 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.846 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds