Wall clock time and date at job start Mon Mar 30 2020 07:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38252 * 120.00106 * 2 1 4 4 C 1.38220 * 119.99996 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99834 * 0.04294 * 4 3 2 6 6 C 1.38219 * 119.99884 * 359.90828 * 5 4 3 7 7 C 1.50703 * 119.99833 * 180.34483 * 6 5 4 8 8 O 1.42896 * 109.46870 * 69.77949 * 7 6 5 9 9 C 1.50699 * 109.47287 * 189.78342 * 7 6 5 10 10 H 1.07993 * 119.99511 * 240.00433 * 9 7 6 11 11 C 1.37875 * 119.99792 * 59.99482 * 9 7 6 12 12 N 1.31513 * 120.00394 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 119.99807 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46846 * 90.00445 * 13 11 9 15 15 H 1.48492 * 109.47319 * 210.00477 * 13 11 9 16 16 H 1.48504 * 109.46847 * 330.00931 * 13 11 9 17 17 C 1.50704 * 109.47068 * 309.78554 * 7 6 5 18 18 C 1.38238 * 119.99718 * 332.11531 * 17 7 6 19 19 C 1.38238 * 119.99815 * 179.77004 * 18 17 7 20 20 C 1.38231 * 119.99800 * 0.48485 * 19 18 17 21 21 C 1.38239 * 120.00159 * 359.79620 * 20 19 18 22 22 C 1.38229 * 119.99892 * 359.95087 * 21 20 19 23 23 C 1.38218 * 119.99436 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47673 * 270.02141 * 1 2 3 25 25 H 1.09006 * 109.46999 * 30.02138 * 1 2 3 26 26 H 1.09002 * 109.47424 * 150.02210 * 1 2 3 27 27 H 1.07998 * 120.00326 * 359.97438 * 3 2 1 28 28 H 1.07991 * 119.99776 * 179.97438 * 4 3 2 29 29 H 1.07999 * 120.00105 * 179.97438 * 5 4 3 30 30 H 0.96703 * 114.00147 * 299.99816 * 8 7 6 31 31 H 0.96995 * 120.00057 * 179.97438 * 12 11 9 32 32 H 1.08003 * 120.00542 * 0.02562 * 18 17 7 33 33 H 1.08003 * 119.99970 * 180.25792 * 19 18 17 34 34 H 1.08002 * 119.99911 * 179.76413 * 20 19 18 35 35 H 1.07997 * 119.99995 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.00179 * 180.02562 * 22 21 20 37 37 H 1.07991 * 120.00286 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0020 6 6 3.5805 -1.1971 -0.0009 7 6 4.3340 -2.5022 0.0053 8 8 4.9710 -2.6783 1.2723 9 6 3.3734 -3.6380 -0.2362 10 1 3.2607 -4.4164 0.5039 11 6 2.6384 -3.6832 -1.4018 12 7 2.7760 -2.7355 -2.3032 13 14 1.4483 -5.0915 -1.7015 14 1 0.1110 -4.7320 -1.1651 15 1 1.3436 -5.3492 -3.1602 16 1 1.9441 -6.3127 -1.0173 17 6 5.3763 -2.4858 -1.0830 18 6 5.1805 -1.7183 -2.2159 19 6 6.1388 -1.6994 -3.2121 20 6 7.2881 -2.4559 -3.0798 21 6 7.4812 -3.2280 -1.9495 22 6 6.5254 -3.2427 -0.9510 23 6 2.1979 -1.1971 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1325 -0.0010 29 1 5.3517 -0.0002 -0.0028 30 1 5.6044 -1.9821 1.4942 31 1 2.2592 -2.7675 -3.1234 32 1 4.2808 -1.1301 -2.3210 33 1 5.9877 -1.0965 -4.0954 34 1 8.0351 -2.4442 -3.8598 35 1 8.3790 -3.8193 -1.8463 36 1 6.6764 -3.8455 -0.0677 37 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584596264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:58 Heat of formation + Delta-G solvation = 4.086297 kcal Electronic energy + Delta-G solvation = -20759.703521 eV Core-core repulsion = 17852.767294 eV Total energy + Delta-G solvation = -2906.936227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.35323 -37.72221 -35.73430 -33.16580 -31.99111 -30.32278 -29.80867 -29.33012 -26.59369 -26.07747 -23.42596 -21.55273 -20.94251 -20.76404 -19.38164 -16.85910 -16.18600 -15.86689 -15.18629 -14.73024 -14.32072 -14.10813 -13.66631 -13.35688 -13.15866 -12.95715 -12.67699 -12.37018 -12.20996 -11.73495 -11.61900 -11.55413 -11.14476 -10.99662 -10.94242 -10.63229 -10.55660 -10.32378 -10.16591 -9.90975 -9.18491 -9.00740 -8.63537 -7.87054 -7.76045 -7.62135 -7.50822 -6.14397 -4.31478 2.26638 2.42098 2.43193 2.54915 3.19313 3.27587 3.31513 4.23099 4.71636 4.90125 5.06202 5.56671 5.62756 5.76412 5.76941 5.79679 5.87593 5.96047 5.99205 6.10666 6.16893 6.31439 6.36166 6.48973 6.60451 6.68885 6.77416 6.96278 6.98733 7.09611 7.18049 7.33438 7.46381 7.53514 7.57826 7.65693 7.76959 7.90231 7.99083 8.13517 8.18475 8.64502 8.94496 9.34035 10.78555 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.010519 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.383883 B = 2661.099961 C = 3669.891062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.114 4.114 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.132 4.132 6 C -0.048 4.048 7 C 0.317 3.683 8 O -0.558 6.558 9 C -0.500 4.500 10 H 0.071 0.929 11 C 0.068 3.932 12 N -0.863 5.863 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.065 4.065 18 C -0.045 4.045 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.150 4.150 22 C -0.115 4.115 23 C -0.044 4.044 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.350 0.650 31 H 0.265 0.735 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 5.262 1.212 5.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.114 4.114 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.049 4.049 7 C 0.277 3.723 8 O -0.362 6.362 9 C -0.538 4.538 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.498 5.498 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.066 4.066 18 C -0.064 4.064 19 C -0.170 4.170 20 C -0.161 4.161 21 C -0.168 4.168 22 C -0.133 4.133 23 C -0.062 4.062 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.194 0.806 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.005 4.761 1.015 4.970 hybrid contribution -0.210 -0.267 -0.738 0.813 sum 0.795 4.493 0.276 4.572 Atomic orbital electron populations 1.20670 0.92594 1.01797 1.01111 1.19891 0.95242 0.93755 1.02503 1.20706 0.94127 0.96610 1.04134 1.20785 0.94149 0.97113 1.03586 1.20963 0.98882 0.92715 1.02518 1.20694 0.94705 0.94992 0.94535 1.16798 0.86860 0.90921 0.77691 1.86629 1.59679 1.51091 1.38773 1.20710 1.20726 1.08238 1.04113 0.91109 1.24854 0.97139 0.96280 0.95369 1.69947 1.39376 1.32050 1.08438 0.86464 0.80982 0.82465 0.77576 1.20291 1.20998 1.19642 1.20691 0.93233 0.94394 0.98307 1.21354 0.96428 0.96920 0.91705 1.21045 0.95208 1.01296 0.99445 1.20821 0.98026 0.99450 0.97770 1.20810 0.99403 1.01311 0.95278 1.20880 0.94296 0.99381 0.98783 1.21148 0.94200 0.96883 0.93947 0.92280 0.92698 0.91993 0.87909 0.87747 0.87759 0.80588 0.92431 0.84140 0.88039 0.88193 0.87949 0.86899 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 10.01 36.00 0.36 -1.33 16 2 C -0.11 -2.22 5.88 -104.63 -0.62 -2.83 16 3 C -0.14 -2.48 9.70 -39.58 -0.38 -2.87 16 4 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16 5 C -0.13 -2.64 7.80 -39.58 -0.31 -2.95 16 6 C -0.05 -1.08 3.25 -104.62 -0.34 -1.42 16 7 C 0.32 7.46 0.83 -94.07 -0.08 7.38 16 8 O -0.56 -12.43 12.01 -35.23 -0.42 -12.85 16 9 C -0.50 -12.95 7.17 -34.44 -0.25 -13.20 16 10 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 11 C 0.07 1.70 3.64 -17.82 -0.06 1.63 16 12 N -0.86 -21.72 8.04 55.43 0.45 -21.28 16 13 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C -0.07 -1.49 3.93 -104.62 -0.41 -1.90 16 18 C -0.05 -1.02 6.47 -39.58 -0.26 -1.28 16 19 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 20 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 21 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 22 C -0.12 -2.46 9.35 -39.59 -0.37 -2.83 16 23 C -0.04 -0.98 7.46 -39.58 -0.30 -1.28 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 26 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 27 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.10 1.95 7.71 -52.49 -0.40 1.55 16 30 H 0.35 6.42 8.85 45.56 0.40 6.82 16 31 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.14 3.41 5.37 -52.48 -0.28 3.13 16 33 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 34 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.11 2.35 7.55 -52.49 -0.40 1.95 16 37 H 0.13 3.19 5.65 -52.49 -0.30 2.89 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -26.96 302.46 -8.94 -35.90 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -3.90 Total: 14.14 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: -4.60 Total: -35.63 kcal Atomic # 7 Polarization: -21.72 SS G_CDS: 0.45 Total: -21.28 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.42 Total: -12.85 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.96 -8.94 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584596264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.989 kcal (2) G-P(sol) polarization free energy of solvation -26.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds