Wall clock time and date at job start Mon Mar 30 2020 07:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38252 * 120.00106 * 2 1 4 4 C 1.38220 * 119.99996 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99834 * 0.04294 * 4 3 2 6 6 C 1.38219 * 119.99884 * 359.90828 * 5 4 3 7 7 C 1.50703 * 119.99833 * 180.34483 * 6 5 4 8 8 O 1.42896 * 109.46870 * 69.77949 * 7 6 5 9 9 C 1.50699 * 109.47287 * 189.78342 * 7 6 5 10 10 H 1.07993 * 119.99511 * 240.00433 * 9 7 6 11 11 C 1.37875 * 119.99792 * 59.99482 * 9 7 6 12 12 N 1.31513 * 120.00394 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 119.99807 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46846 * 90.00445 * 13 11 9 15 15 H 1.48492 * 109.47319 * 210.00477 * 13 11 9 16 16 H 1.48504 * 109.46847 * 330.00931 * 13 11 9 17 17 C 1.50704 * 109.47068 * 309.78554 * 7 6 5 18 18 C 1.38238 * 119.99718 * 332.11531 * 17 7 6 19 19 C 1.38238 * 119.99815 * 179.77004 * 18 17 7 20 20 C 1.38231 * 119.99800 * 0.48485 * 19 18 17 21 21 C 1.38239 * 120.00159 * 359.79620 * 20 19 18 22 22 C 1.38229 * 119.99892 * 359.95087 * 21 20 19 23 23 C 1.38218 * 119.99436 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47673 * 270.02141 * 1 2 3 25 25 H 1.09006 * 109.46999 * 30.02138 * 1 2 3 26 26 H 1.09002 * 109.47424 * 150.02210 * 1 2 3 27 27 H 1.07998 * 120.00326 * 359.97438 * 3 2 1 28 28 H 1.07991 * 119.99776 * 179.97438 * 4 3 2 29 29 H 1.07999 * 120.00105 * 179.97438 * 5 4 3 30 30 H 0.96703 * 114.00147 * 299.99816 * 8 7 6 31 31 H 0.96995 * 120.00057 * 179.97438 * 12 11 9 32 32 H 1.08003 * 120.00542 * 0.02562 * 18 17 7 33 33 H 1.08003 * 119.99970 * 180.25792 * 19 18 17 34 34 H 1.08002 * 119.99911 * 179.76413 * 20 19 18 35 35 H 1.07997 * 119.99995 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.00179 * 180.02562 * 22 21 20 37 37 H 1.07991 * 120.00286 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0020 6 6 3.5805 -1.1971 -0.0009 7 6 4.3340 -2.5022 0.0053 8 8 4.9710 -2.6783 1.2723 9 6 3.3734 -3.6380 -0.2362 10 1 3.2607 -4.4164 0.5039 11 6 2.6384 -3.6832 -1.4018 12 7 2.7760 -2.7355 -2.3032 13 14 1.4483 -5.0915 -1.7015 14 1 0.1110 -4.7320 -1.1651 15 1 1.3436 -5.3492 -3.1602 16 1 1.9441 -6.3127 -1.0173 17 6 5.3763 -2.4858 -1.0830 18 6 5.1805 -1.7183 -2.2159 19 6 6.1388 -1.6994 -3.2121 20 6 7.2881 -2.4559 -3.0798 21 6 7.4812 -3.2280 -1.9495 22 6 6.5254 -3.2427 -0.9510 23 6 2.1979 -1.1971 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1325 -0.0010 29 1 5.3517 -0.0002 -0.0028 30 1 5.6044 -1.9821 1.4942 31 1 2.2592 -2.7675 -3.1234 32 1 4.2808 -1.1301 -2.3210 33 1 5.9877 -1.0965 -4.0954 34 1 8.0351 -2.4442 -3.8598 35 1 8.3790 -3.8193 -1.8463 36 1 6.6764 -3.8455 -0.0677 37 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584596264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:57 Heat of formation + Delta-G solvation = -9.754924 kcal Electronic energy + Delta-G solvation = -20760.303722 eV Core-core repulsion = 17852.767294 eV Total energy + Delta-G solvation = -2907.536427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96418 -39.25995 -37.39206 -35.01413 -33.47043 -31.97817 -31.40408 -30.89274 -28.37789 -27.50554 -25.14511 -23.15044 -22.50696 -22.32183 -21.00334 -18.59846 -17.94708 -17.43541 -16.83729 -16.49619 -15.88270 -15.68180 -15.29567 -14.93593 -14.67742 -14.42899 -14.25601 -13.93110 -13.73978 -13.37538 -13.28059 -12.98054 -12.85730 -12.76314 -12.45794 -12.32535 -12.15945 -12.12500 -11.70546 -11.53232 -10.92944 -10.77055 -10.42242 -9.47204 -9.32808 -9.18886 -9.10734 -8.03185 -6.27354 0.74334 0.82627 0.88905 0.96367 1.36700 1.39935 1.47677 2.36229 3.12095 3.18007 3.29511 4.07502 4.18174 4.22939 4.29370 4.35521 4.43999 4.49335 4.55936 4.69347 4.77096 4.86655 4.91122 4.99767 5.10749 5.13804 5.19035 5.40289 5.48116 5.53792 5.59907 5.66612 5.82827 5.87997 5.93696 5.99566 6.04991 6.26539 6.40024 6.49203 6.51702 6.76769 7.20409 7.44634 8.84966 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.010519 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.383883 B = 2661.099961 C = 3669.891062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.121 4.121 3 C -0.137 4.137 4 C -0.133 4.133 5 C -0.141 4.141 6 C -0.064 4.064 7 C 0.312 3.688 8 O -0.573 6.573 9 C -0.526 4.526 10 H 0.044 0.956 11 C 0.045 3.955 12 N -0.865 5.865 13 Si 0.940 3.060 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.279 1.279 17 C -0.081 4.081 18 C -0.058 4.058 19 C -0.159 4.159 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.133 4.133 23 C -0.074 4.074 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.110 0.890 30 H 0.365 0.635 31 H 0.262 0.738 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 6.878 0.264 7.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C -0.155 4.155 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.065 4.065 7 C 0.272 3.728 8 O -0.378 6.378 9 C -0.563 4.563 10 H 0.062 0.938 11 C -0.158 4.158 12 N -0.500 5.500 13 Si 0.766 3.234 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.204 1.204 17 C -0.081 4.081 18 C -0.077 4.077 19 C -0.177 4.177 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.152 4.152 23 C -0.093 4.093 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.128 0.872 30 H 0.210 0.790 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.127 0.873 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.687 6.390 0.073 6.610 hybrid contribution -0.369 -0.741 -0.418 0.928 sum 1.318 5.649 -0.344 5.811 Atomic orbital electron populations 1.20698 0.90450 1.02374 1.02358 1.20251 0.97029 0.93347 1.01479 1.21101 0.94339 0.97331 1.02684 1.21191 0.94573 0.97674 1.01636 1.21047 0.99251 0.92708 1.02885 1.20603 0.94785 0.95221 0.95885 1.16745 0.86995 0.90911 0.78112 1.86563 1.60261 1.52122 1.38844 1.20772 1.22636 1.08768 1.04123 0.93773 1.25236 0.97785 0.97689 0.95105 1.70072 1.39361 1.32421 1.08151 0.85828 0.79991 0.80330 0.77257 1.19544 1.20700 1.20444 1.20667 0.93748 0.95401 0.98325 1.21180 0.96524 0.97465 0.92548 1.21326 0.95247 1.01675 0.99426 1.21212 0.98024 0.97951 0.98301 1.21173 0.99711 1.00984 0.94465 1.21018 0.94803 0.99641 0.99697 1.21034 0.94494 0.96983 0.96753 0.90639 0.90175 0.93302 0.84362 0.84346 0.87187 0.78952 0.92834 0.86301 0.86151 0.84492 0.84758 0.87324 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.16 10.01 71.24 0.71 -2.44 16 2 C -0.12 -4.63 5.88 -19.87 -0.12 -4.74 16 3 C -0.14 -4.58 9.70 22.27 0.22 -4.37 16 4 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 5 C -0.14 -5.55 7.80 22.27 0.17 -5.38 16 6 C -0.06 -2.93 3.25 -19.86 -0.06 -2.99 16 7 C 0.31 15.24 0.83 -13.03 -0.01 15.23 16 8 O -0.57 -26.58 12.01 -148.98 -1.79 -28.37 16 9 C -0.53 -28.56 7.17 25.60 0.18 -28.38 16 10 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 11 C 0.05 2.35 3.64 84.65 0.31 2.66 16 12 N -0.87 -44.66 8.04 21.45 0.17 -44.49 16 13 Si 0.94 42.50 29.54 68.60 2.03 44.53 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 C -0.08 -3.73 3.93 -19.86 -0.08 -3.81 16 18 C -0.06 -2.63 6.47 22.27 0.14 -2.49 16 19 C -0.16 -6.19 10.05 22.27 0.22 -5.97 16 20 C -0.14 -4.77 10.05 22.27 0.22 -4.55 16 21 C -0.15 -5.26 10.05 22.27 0.22 -5.04 16 22 C -0.13 -5.68 9.35 22.27 0.21 -5.47 16 23 C -0.07 -3.42 7.46 22.27 0.17 -3.26 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.08 2.04 8.09 -2.38 -0.02 2.03 16 26 H 0.05 1.61 8.09 -2.39 -0.02 1.59 16 27 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.14 3.71 8.06 -2.92 -0.02 3.69 16 29 H 0.11 4.10 7.71 -2.91 -0.02 4.07 16 30 H 0.36 13.87 8.85 -74.06 -0.66 13.21 16 31 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 32 H 0.12 5.87 5.37 -2.91 -0.02 5.85 16 33 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 35 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.11 4.60 7.55 -2.91 -0.02 4.58 16 37 H 0.10 5.22 5.65 -2.92 -0.02 5.21 16 Total: -1.00 -59.62 302.46 3.57 -56.05 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.42 Total: 37.57 kcal Atomic # 6 Polarization: -68.03 SS G_CDS: 2.74 Total: -65.30 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.17 Total: -44.49 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -1.79 Total: -28.37 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -59.62 3.57 -56.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584596264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.300 kcal (2) G-P(sol) polarization free energy of solvation -59.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds