Wall clock time and date at job start Mon Mar 30 2020 07:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38256 * 119.99712 * 2 1 4 4 C 1.38219 * 119.99939 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99573 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00233 * 359.77031 * 5 4 3 7 7 C 1.38209 * 120.00154 * 180.02562 * 2 1 3 8 8 C 1.50703 * 119.99745 * 359.97438 * 7 2 1 9 9 O 1.42896 * 109.47018 * 301.74950 * 8 7 2 10 10 C 1.50701 * 109.46923 * 181.75162 * 8 7 2 11 11 H 1.07998 * 119.99905 * 114.56269 * 10 8 7 12 12 C 1.37879 * 120.00087 * 294.56746 * 10 8 7 13 13 N 1.31516 * 119.99979 * 356.90579 * 12 10 8 14 14 Si 1.86799 * 120.00134 * 176.91280 * 12 10 8 15 15 H 1.48508 * 109.46770 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47513 * 119.99453 * 14 12 10 17 17 H 1.48503 * 109.46870 * 239.99860 * 14 12 10 18 18 C 1.50702 * 109.47402 * 61.75294 * 8 7 2 19 19 C 1.38240 * 119.99832 * 24.75412 * 18 8 7 20 20 C 1.38237 * 119.99497 * 179.76641 * 19 18 8 21 21 C 1.38225 * 120.00401 * 0.48920 * 20 19 18 22 22 C 1.38242 * 119.99760 * 359.78489 * 21 20 19 23 23 C 1.38227 * 120.00218 * 359.96229 * 22 21 20 24 24 H 1.09003 * 109.46660 * 274.03099 * 1 2 3 25 25 H 1.08997 * 109.46986 * 34.02859 * 1 2 3 26 26 H 1.08998 * 109.46724 * 154.02869 * 1 2 3 27 27 H 1.07997 * 120.00454 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00366 * 179.97438 * 4 3 2 29 29 H 1.07998 * 119.99872 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.99752 * 180.25070 * 6 5 4 31 31 H 0.96705 * 113.99824 * 60.00991 * 9 8 7 32 32 H 0.96997 * 119.99696 * 184.98979 * 13 12 10 33 33 H 1.07999 * 119.99975 * 0.02562 * 19 18 8 34 34 H 1.08000 * 119.99124 * 180.25493 * 20 19 18 35 35 H 1.08001 * 120.00453 * 179.76901 * 21 20 19 36 36 H 1.07998 * 119.99647 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00214 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0048 7 6 2.1982 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 8 0.5930 -2.5603 1.1454 10 6 2.4234 -3.6471 0.0423 11 1 2.4564 -4.2973 0.9040 12 6 3.2767 -3.8647 -1.0186 13 7 3.1954 -3.1109 -2.0933 14 14 4.5483 -5.2302 -0.9297 15 1 4.4353 -5.9275 0.3766 16 1 4.3124 -6.1988 -2.0303 17 1 5.9084 -4.6495 -1.0644 18 6 0.6106 -2.6006 -1.2518 19 6 0.9743 -1.8931 -2.3824 20 6 0.2119 -1.9873 -3.5317 21 6 -0.9197 -2.7810 -3.5473 22 6 -1.2865 -3.4841 -2.4150 23 6 -0.5213 -3.3940 -1.2674 24 1 -0.3633 0.0722 1.0252 25 1 -0.3633 0.8517 -0.5751 26 1 -0.3633 -0.9239 -0.4500 27 1 1.6583 2.1327 -0.0004 28 1 4.1205 2.1327 0.0001 29 1 5.3517 0.0001 0.0005 30 1 4.1207 -2.1322 0.0089 31 1 -0.0639 -1.8516 1.1837 32 1 3.7452 -3.3090 -2.8674 33 1 1.8563 -1.2700 -2.3690 34 1 0.4983 -1.4377 -4.4161 35 1 -1.5174 -2.8518 -4.4441 36 1 -2.1708 -4.1040 -2.4271 37 1 -0.8081 -3.9430 -0.3826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584596323.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:01 Heat of formation + Delta-G solvation = 13.550003 kcal Electronic energy + Delta-G solvation = -21157.237152 eV Core-core repulsion = 18250.711302 eV Total energy + Delta-G solvation = -2906.525850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69578 -37.63563 -35.65702 -33.35413 -31.86466 -30.35427 -29.79822 -29.26789 -27.04018 -25.73422 -23.43406 -21.52456 -20.97336 -20.50752 -19.75594 -16.88889 -16.20741 -15.85906 -15.08219 -14.90257 -14.31603 -14.09860 -13.68598 -13.40752 -13.23632 -12.95165 -12.59096 -12.34986 -12.22961 -11.93703 -11.55629 -11.26795 -11.14229 -11.11917 -10.95239 -10.57638 -10.52433 -10.31135 -10.13796 -9.92533 -9.18316 -9.01766 -8.58825 -7.85517 -7.79200 -7.64771 -7.51342 -6.08553 -4.32383 2.22859 2.37668 2.45493 2.57526 3.18344 3.27956 3.32388 4.22634 4.69105 4.91708 5.02585 5.54098 5.64259 5.72279 5.77729 5.80552 5.88920 5.90912 6.01420 6.08303 6.16785 6.28177 6.38106 6.48497 6.65632 6.70147 6.78616 6.93715 6.97771 7.07816 7.17815 7.31538 7.46662 7.51186 7.58923 7.64570 7.74334 7.90014 7.95680 8.13042 8.18324 8.64384 8.93832 9.32759 10.77734 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.012759 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.471324 B = 2194.011963 C = 3394.290736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.149 4.149 6 C -0.050 4.050 7 C -0.059 4.059 8 C 0.317 3.683 9 O -0.563 6.563 10 C -0.499 4.499 11 H 0.072 0.928 12 C 0.066 3.934 13 N -0.865 5.865 14 Si 0.897 3.103 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.280 1.280 18 C -0.052 4.052 19 C -0.028 4.028 20 C -0.153 4.153 21 C -0.141 4.141 22 C -0.150 4.150 23 C -0.118 4.118 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.139 0.861 31 H 0.350 0.650 32 H 0.265 0.735 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 5.491 0.198 6.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 C -0.159 4.159 4 C -0.154 4.154 5 C -0.167 4.167 6 C -0.068 4.068 7 C -0.060 4.060 8 C 0.277 3.723 9 O -0.369 6.369 10 C -0.537 4.537 11 H 0.090 0.910 12 C -0.137 4.137 13 N -0.500 5.500 14 Si 0.724 3.276 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.206 1.206 18 C -0.053 4.053 19 C -0.047 4.047 20 C -0.171 4.171 21 C -0.160 4.160 22 C -0.169 4.169 23 C -0.136 4.136 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.156 0.844 31 H 0.196 0.804 32 H 0.076 0.924 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.941 5.014 0.160 5.815 hybrid contribution 0.510 -0.284 -0.603 0.839 sum -2.431 4.730 -0.442 5.336 Atomic orbital electron populations 1.21099 0.92776 1.03501 1.01311 1.19742 0.95223 0.93229 1.01533 1.20706 0.94111 0.96651 1.04416 1.20847 0.94206 0.97232 1.03070 1.21122 0.98957 0.93176 1.03477 1.21437 0.94359 0.97804 0.93229 1.20709 0.94808 0.94723 0.95722 1.16769 0.85368 0.90812 0.79339 1.86633 1.49510 1.53623 1.47101 1.20761 1.15459 1.12976 1.04481 0.90963 1.24878 0.97442 0.96273 0.95133 1.69979 1.39156 1.37289 1.03624 0.86427 0.80996 0.81681 0.78508 1.19407 1.20759 1.20610 1.20445 0.92683 0.94240 0.97913 1.21011 0.95630 0.96707 0.91324 1.20963 0.96470 1.01363 0.98321 1.20785 0.98085 0.99643 0.97449 1.20782 1.00404 1.01674 0.94000 1.20853 0.95782 0.99317 0.97674 0.91903 0.92218 0.90124 0.87654 0.87767 0.87665 0.84378 0.80396 0.92410 0.85455 0.88149 0.88254 0.88003 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 7.87 36.01 0.28 -1.91 16 2 C -0.10 -1.90 5.12 -104.62 -0.54 -2.44 16 3 C -0.14 -2.53 9.72 -39.58 -0.38 -2.92 16 4 C -0.14 -2.42 10.05 -39.58 -0.40 -2.82 16 5 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 6 C -0.05 -1.14 7.97 -39.59 -0.32 -1.45 16 7 C -0.06 -1.31 3.18 -104.63 -0.33 -1.65 16 8 C 0.32 7.48 0.68 -94.07 -0.06 7.41 16 9 O -0.56 -12.73 12.09 -35.23 -0.43 -13.15 16 10 C -0.50 -12.96 7.34 -34.44 -0.25 -13.21 16 11 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 12 C 0.07 1.66 3.32 -17.82 -0.06 1.61 16 13 N -0.87 -21.82 8.14 55.43 0.45 -21.37 16 14 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 18 C -0.05 -1.18 1.92 -104.62 -0.20 -1.38 16 19 C -0.03 -0.62 5.90 -39.58 -0.23 -0.85 16 20 C -0.15 -3.10 10.05 -39.59 -0.40 -3.50 16 21 C -0.14 -2.68 10.05 -39.58 -0.40 -3.07 16 22 C -0.15 -2.90 10.05 -39.58 -0.40 -3.29 16 23 C -0.12 -2.53 9.15 -39.59 -0.36 -2.89 16 24 H 0.06 0.92 7.54 -51.93 -0.39 0.53 16 25 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 26 H 0.08 1.47 3.89 -51.93 -0.20 1.27 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.14 3.36 5.16 -52.48 -0.27 3.09 16 31 H 0.35 6.67 5.65 45.56 0.26 6.93 16 32 H 0.27 6.56 8.32 -40.82 -0.34 6.22 16 33 H 0.13 3.08 5.91 -52.49 -0.31 2.77 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.11 2.36 7.63 -52.49 -0.40 1.96 16 LS Contribution 291.87 15.07 4.40 4.40 Total: -1.00 -26.98 291.87 -8.86 -35.84 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -3.82 Total: 14.86 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: -4.45 Total: -35.69 kcal Atomic # 7 Polarization: -21.82 SS G_CDS: 0.45 Total: -21.37 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.43 Total: -13.15 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.98 -8.86 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584596323.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.393 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds