Wall clock time and date at job start Mon Mar 30 2020 07:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38256 * 119.99712 * 2 1 4 4 C 1.38219 * 119.99939 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99573 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00233 * 359.77031 * 5 4 3 7 7 C 1.38209 * 120.00154 * 180.02562 * 2 1 3 8 8 C 1.50703 * 119.99745 * 359.97438 * 7 2 1 9 9 O 1.42896 * 109.47018 * 301.74950 * 8 7 2 10 10 C 1.50701 * 109.46923 * 181.75162 * 8 7 2 11 11 H 1.07998 * 119.99905 * 114.56269 * 10 8 7 12 12 C 1.37879 * 120.00087 * 294.56746 * 10 8 7 13 13 N 1.31516 * 119.99979 * 356.90579 * 12 10 8 14 14 Si 1.86799 * 120.00134 * 176.91280 * 12 10 8 15 15 H 1.48508 * 109.46770 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47513 * 119.99453 * 14 12 10 17 17 H 1.48503 * 109.46870 * 239.99860 * 14 12 10 18 18 C 1.50702 * 109.47402 * 61.75294 * 8 7 2 19 19 C 1.38240 * 119.99832 * 24.75412 * 18 8 7 20 20 C 1.38237 * 119.99497 * 179.76641 * 19 18 8 21 21 C 1.38225 * 120.00401 * 0.48920 * 20 19 18 22 22 C 1.38242 * 119.99760 * 359.78489 * 21 20 19 23 23 C 1.38227 * 120.00218 * 359.96229 * 22 21 20 24 24 H 1.09003 * 109.46660 * 274.03099 * 1 2 3 25 25 H 1.08997 * 109.46986 * 34.02859 * 1 2 3 26 26 H 1.08998 * 109.46724 * 154.02869 * 1 2 3 27 27 H 1.07997 * 120.00454 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00366 * 179.97438 * 4 3 2 29 29 H 1.07998 * 119.99872 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.99752 * 180.25070 * 6 5 4 31 31 H 0.96705 * 113.99824 * 60.00991 * 9 8 7 32 32 H 0.96997 * 119.99696 * 184.98979 * 13 12 10 33 33 H 1.07999 * 119.99975 * 0.02562 * 19 18 8 34 34 H 1.08000 * 119.99124 * 180.25493 * 20 19 18 35 35 H 1.08001 * 120.00453 * 179.76901 * 21 20 19 36 36 H 1.07998 * 119.99647 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00214 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0048 7 6 2.1982 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 8 0.5930 -2.5603 1.1454 10 6 2.4234 -3.6471 0.0423 11 1 2.4564 -4.2973 0.9040 12 6 3.2767 -3.8647 -1.0186 13 7 3.1954 -3.1109 -2.0933 14 14 4.5483 -5.2302 -0.9297 15 1 4.4353 -5.9275 0.3766 16 1 4.3124 -6.1988 -2.0303 17 1 5.9084 -4.6495 -1.0644 18 6 0.6106 -2.6006 -1.2518 19 6 0.9743 -1.8931 -2.3824 20 6 0.2119 -1.9873 -3.5317 21 6 -0.9197 -2.7810 -3.5473 22 6 -1.2865 -3.4841 -2.4150 23 6 -0.5213 -3.3940 -1.2674 24 1 -0.3633 0.0722 1.0252 25 1 -0.3633 0.8517 -0.5751 26 1 -0.3633 -0.9239 -0.4500 27 1 1.6583 2.1327 -0.0004 28 1 4.1205 2.1327 0.0001 29 1 5.3517 0.0001 0.0005 30 1 4.1207 -2.1322 0.0089 31 1 -0.0639 -1.8516 1.1837 32 1 3.7452 -3.3090 -2.8674 33 1 1.8563 -1.2700 -2.3690 34 1 0.4983 -1.4377 -4.4161 35 1 -1.5174 -2.8518 -4.4441 36 1 -2.1708 -4.1040 -2.4271 37 1 -0.8081 -3.9430 -0.3826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584596323.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:01 Heat of formation + Delta-G solvation = -0.271703 kcal Electronic energy + Delta-G solvation = -21157.836506 eV Core-core repulsion = 18250.711302 eV Total energy + Delta-G solvation = -2907.125204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29211 -39.17048 -37.31177 -35.18522 -33.35500 -32.03916 -31.38885 -30.81145 -28.69285 -27.31340 -25.12802 -23.11593 -22.52930 -22.05396 -21.38047 -18.63791 -17.92599 -17.46865 -16.77023 -16.56213 -15.89884 -15.69766 -15.26274 -14.95859 -14.72137 -14.59920 -14.18465 -13.89706 -13.72325 -13.53330 -13.14297 -12.93901 -12.79506 -12.68854 -12.58084 -12.32876 -12.12219 -12.07333 -11.68009 -11.53926 -10.93153 -10.76416 -10.39134 -9.44580 -9.32565 -9.18178 -9.15301 -7.96357 -6.28755 0.72354 0.85481 0.85899 0.99274 1.35260 1.40026 1.49135 2.35725 3.09058 3.15829 3.32066 4.06804 4.18464 4.19251 4.30186 4.38198 4.45157 4.46425 4.54498 4.66685 4.76839 4.82761 4.89212 5.01526 5.11452 5.19281 5.20986 5.41418 5.46545 5.52190 5.59687 5.66898 5.82203 5.89181 5.93573 5.95933 6.04533 6.27784 6.38185 6.47447 6.53037 6.76452 7.18333 7.43222 8.83855 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.012759 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.471324 B = 2194.011963 C = 3394.290736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C -0.139 4.139 4 C -0.130 4.130 5 C -0.158 4.158 6 C -0.082 4.082 7 C -0.080 4.080 8 C 0.313 3.687 9 O -0.578 6.578 10 C -0.526 4.526 11 H 0.045 0.955 12 C 0.044 3.956 13 N -0.868 5.868 14 Si 0.941 3.059 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.274 1.274 18 C -0.059 4.059 19 C -0.038 4.038 20 C -0.159 4.159 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.138 4.138 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.363 0.637 32 H 0.262 0.738 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 7.090 -0.899 8.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 C -0.157 4.157 4 C -0.148 4.148 5 C -0.177 4.177 6 C -0.100 4.100 7 C -0.081 4.081 8 C 0.273 3.727 9 O -0.385 6.385 10 C -0.564 4.564 11 H 0.063 0.937 12 C -0.159 4.159 13 N -0.503 5.503 14 Si 0.767 3.233 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.199 1.199 18 C -0.060 4.060 19 C -0.057 4.057 20 C -0.177 4.177 21 C -0.155 4.155 22 C -0.164 4.164 23 C -0.156 4.156 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.211 0.789 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.009 6.626 -0.935 7.800 hybrid contribution 0.807 -0.743 -0.241 1.123 sum -3.202 5.882 -1.176 6.800 Atomic orbital electron populations 1.21098 0.90970 1.03546 1.02790 1.20041 0.96733 0.92865 1.00836 1.21137 0.94456 0.97362 1.02744 1.21249 0.94530 0.97832 1.01157 1.21332 0.99929 0.93019 1.03372 1.21337 0.94882 0.97873 0.95902 1.20634 0.94783 0.95203 0.97503 1.16698 0.85303 0.90754 0.79905 1.86573 1.50053 1.54595 1.47325 1.20835 1.17492 1.14005 1.04032 0.93700 1.25261 0.98152 0.97591 0.94866 1.70108 1.39189 1.37511 1.03507 0.85759 0.79782 0.79851 0.77882 1.20079 1.20729 1.19895 1.20339 0.93145 0.94969 0.97545 1.20800 0.95522 0.97209 0.92216 1.21241 0.96696 1.01654 0.98147 1.21157 0.97591 0.98222 0.98527 1.21127 1.00759 1.01349 0.93126 1.20979 0.96275 0.99737 0.98641 0.89905 0.90071 0.91765 0.84146 0.84100 0.86108 0.87331 0.78906 0.92785 0.87823 0.86341 0.84645 0.84930 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.87 71.24 0.56 -3.52 16 2 C -0.10 -4.00 5.12 -19.86 -0.10 -4.10 16 3 C -0.14 -4.63 9.72 22.27 0.22 -4.42 16 4 C -0.13 -4.32 10.05 22.27 0.22 -4.09 16 5 C -0.16 -6.16 10.05 22.27 0.22 -5.94 16 6 C -0.08 -3.81 7.97 22.27 0.18 -3.63 16 7 C -0.08 -3.67 3.18 -19.87 -0.06 -3.73 16 8 C 0.31 15.25 0.68 -13.03 -0.01 15.25 16 9 O -0.58 -27.02 12.09 -148.98 -1.80 -28.82 16 10 C -0.53 -28.68 7.34 25.60 0.19 -28.50 16 11 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 12 C 0.04 2.29 3.32 84.65 0.28 2.58 16 13 N -0.87 -44.93 8.14 21.45 0.17 -44.75 16 14 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 C -0.06 -2.71 1.92 -19.86 -0.04 -2.75 16 19 C -0.04 -1.71 5.90 22.27 0.13 -1.58 16 20 C -0.16 -6.18 10.05 22.27 0.22 -5.96 16 21 C -0.14 -4.78 10.05 22.27 0.22 -4.55 16 22 C -0.15 -5.28 10.05 22.27 0.22 -5.06 16 23 C -0.14 -5.89 9.15 22.27 0.20 -5.68 16 24 H 0.08 2.27 7.54 -2.39 -0.02 2.25 16 25 H 0.08 2.20 8.11 -2.39 -0.02 2.18 16 26 H 0.06 2.30 3.89 -2.39 -0.01 2.29 16 27 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 29 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 30 H 0.11 5.59 5.16 -2.91 -0.02 5.57 16 31 H 0.36 14.09 5.65 -74.05 -0.42 13.67 16 32 H 0.26 13.23 8.32 -92.71 -0.77 12.46 16 33 H 0.10 5.11 5.91 -2.91 -0.02 5.09 16 34 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 36 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.11 4.52 7.63 -2.91 -0.02 4.50 16 Total: -1.00 -59.90 291.87 3.73 -56.17 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: 0.67 Total: 38.49 kcal Atomic # 6 Polarization: -68.35 SS G_CDS: 2.67 Total: -65.69 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.17 Total: -44.75 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.80 Total: -28.82 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -59.90 3.73 -56.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584596323.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.900 kcal (2) G-P(sol) polarization free energy of solvation -59.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds