Wall clock time and date at job start Mon Mar 30 2020 07:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38254 * 119.99653 * 2 1 4 4 C 1.38216 * 119.99823 * 180.24789 * 3 2 1 5 5 C 1.38259 * 119.99744 * 359.79985 * 4 3 2 6 6 C 1.38210 * 120.00266 * 359.94285 * 5 4 3 7 7 C 1.38211 * 120.00115 * 179.76959 * 2 1 3 8 8 C 1.50703 * 120.00040 * 359.97438 * 7 2 1 9 9 O 1.42902 * 109.46948 * 67.47449 * 8 7 2 10 10 C 1.50698 * 109.47243 * 187.47330 * 8 7 2 11 11 H 1.07998 * 120.00683 * 241.52483 * 10 8 7 12 12 C 1.37887 * 119.99592 * 61.52326 * 10 8 7 13 13 N 1.31509 * 119.99986 * 2.63274 * 12 10 8 14 14 Si 1.86804 * 119.99669 * 182.63079 * 12 10 8 15 15 H 1.48499 * 109.46828 * 89.99866 * 14 12 10 16 16 H 1.48497 * 109.46910 * 209.99822 * 14 12 10 17 17 H 1.48494 * 109.47081 * 330.00114 * 14 12 10 18 18 C 1.50703 * 109.47388 * 307.47703 * 8 7 2 19 19 C 1.38236 * 120.00093 * 151.90785 * 18 8 7 20 20 C 1.38225 * 119.99915 * 179.97438 * 19 18 8 21 21 C 1.38236 * 120.00259 * 359.97438 * 20 19 18 22 22 C 1.38236 * 119.99825 * 0.02562 * 21 20 19 23 23 C 1.38231 * 119.99731 * 331.86350 * 18 8 7 24 24 H 1.09000 * 109.47309 * 276.75308 * 1 2 3 25 25 H 1.08999 * 109.46917 * 36.76232 * 1 2 3 26 26 H 1.09006 * 109.46527 * 156.75913 * 1 2 3 27 27 H 1.08000 * 120.00337 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.99741 * 179.76785 * 4 3 2 29 29 H 1.07996 * 119.99689 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.00102 * 179.97438 * 6 5 4 31 31 H 0.96699 * 114.00270 * 307.76991 * 9 8 7 32 32 H 0.96999 * 119.99516 * 185.00578 * 13 12 10 33 33 H 1.07998 * 119.99465 * 0.25676 * 19 18 8 34 34 H 1.07997 * 120.00215 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.00559 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.00366 * 179.97438 * 22 21 20 37 37 H 1.08006 * 120.00508 * 0.06560 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0052 5 6 4.2717 0.0000 -0.0062 6 6 3.5807 -1.1969 -0.0008 7 6 2.1982 -1.1969 0.0048 8 6 1.4447 -2.5021 0.0106 9 8 0.7591 -2.6618 -1.2329 10 6 2.4136 -3.6406 0.1999 11 1 2.5153 -4.3961 -0.5651 12 6 3.1704 -3.7179 1.3499 13 7 3.0094 -2.8272 2.3040 14 14 4.4241 -5.0878 1.5527 15 1 5.7352 -4.6420 1.0165 16 1 4.5655 -5.4202 2.9930 17 1 3.9683 -6.2899 0.8096 18 6 0.4453 -2.5001 1.1386 19 6 -0.7131 -3.2476 1.0370 20 6 -1.6295 -3.2463 2.0718 21 6 -1.3874 -2.4979 3.2085 22 6 -0.2291 -1.7504 3.3101 23 6 0.6873 -1.7516 2.2752 24 1 -0.3634 0.1208 1.0205 25 1 -0.3633 0.8233 -0.6151 26 1 -0.3632 -0.9444 -0.4056 27 1 1.6583 2.1327 0.0004 28 1 4.1203 2.1327 -0.0090 29 1 5.3517 0.0001 -0.0106 30 1 4.1207 -2.1322 -0.0020 31 1 0.2070 -1.9065 -1.4776 32 1 3.5908 -2.8378 3.0804 33 1 -0.8999 -3.8363 0.1509 34 1 -2.5347 -3.8299 1.9922 35 1 -2.1036 -2.4965 4.0169 36 1 -0.0400 -1.1653 4.1980 37 1 1.5922 -1.1673 2.3545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584596324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:04 Heat of formation + Delta-G solvation = 14.368322 kcal Electronic energy + Delta-G solvation = -21191.777919 eV Core-core repulsion = 18285.287555 eV Total energy + Delta-G solvation = -2906.490365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71004 -37.59939 -35.67894 -33.28695 -31.96792 -30.30338 -29.77960 -29.23751 -27.02236 -25.71061 -23.42771 -21.52665 -20.92406 -20.55871 -19.73315 -16.88330 -16.18277 -15.90954 -15.09475 -14.92352 -14.29652 -14.07670 -13.73281 -13.37823 -13.18457 -12.92678 -12.58675 -12.33968 -12.19116 -11.88511 -11.53256 -11.30986 -11.16915 -11.10956 -10.91119 -10.55457 -10.49018 -10.32019 -10.15055 -9.89482 -9.21755 -9.00570 -8.62869 -7.81811 -7.78809 -7.63946 -7.47057 -6.10849 -4.32684 2.23240 2.38009 2.47281 2.58341 3.19516 3.28088 3.31594 4.22828 4.68155 4.93788 5.05284 5.53844 5.64343 5.70299 5.78038 5.81320 5.88720 5.92121 6.02302 6.13024 6.18372 6.31641 6.39096 6.53077 6.66512 6.70717 6.81535 6.94841 6.98066 7.09067 7.20029 7.32081 7.46687 7.51716 7.59621 7.63045 7.77293 7.92946 7.95360 8.14947 8.19141 8.63663 8.93104 9.33247 10.78144 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.012763 C = 0.008264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.638608 B = 2193.367364 C = 3387.286965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.134 4.134 5 C -0.149 4.149 6 C -0.049 4.049 7 C -0.056 4.056 8 C 0.317 3.683 9 O -0.561 6.561 10 C -0.500 4.500 11 H 0.071 0.929 12 C 0.068 3.932 13 N -0.864 5.864 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.055 4.055 19 C -0.118 4.118 20 C -0.150 4.150 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.035 4.035 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.350 0.650 32 H 0.265 0.735 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 5.598 -1.208 6.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.167 4.167 6 C -0.067 4.067 7 C -0.057 4.057 8 C 0.278 3.722 9 O -0.367 6.367 10 C -0.538 4.538 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.499 5.499 14 Si 0.725 3.275 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.056 4.056 19 C -0.136 4.136 20 C -0.169 4.169 21 C -0.161 4.161 22 C -0.173 4.173 23 C -0.054 4.054 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.152 0.848 31 H 0.197 0.803 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.817 5.018 -0.967 5.835 hybrid contribution 0.525 -0.199 0.648 0.857 sum -2.292 4.819 -0.319 5.346 Atomic orbital electron populations 1.21061 0.92507 1.01671 1.02181 1.19770 0.95277 0.93206 1.01325 1.20696 0.94100 0.96669 1.04398 1.20835 0.94204 0.97204 1.03023 1.21095 0.98901 0.93171 1.03523 1.21318 0.94347 0.97592 0.93449 1.20644 0.94709 0.94626 0.95687 1.16761 0.86507 0.90863 0.78083 1.86657 1.64544 1.44517 1.41003 1.20759 1.20205 1.09257 1.03541 0.91062 1.24873 0.97569 0.96488 0.94676 1.69945 1.36351 1.34976 1.08675 0.86460 0.81227 0.82288 0.77520 1.20298 1.21015 1.19616 1.20549 0.92917 0.94124 0.97994 1.20851 0.94605 0.99634 0.98546 1.20778 0.99582 1.01566 0.94949 1.20789 0.97931 0.99762 0.97635 1.21003 0.95436 1.01653 0.99189 1.21212 0.96103 0.96596 0.91494 0.91203 0.92782 0.91373 0.87662 0.87787 0.87696 0.84810 0.80319 0.92410 0.87022 0.88068 0.88315 0.88189 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 8.01 36.01 0.29 -1.73 16 2 C -0.10 -1.87 4.87 -104.62 -0.51 -2.38 16 3 C -0.14 -2.52 9.73 -39.58 -0.39 -2.90 16 4 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 5 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 6 C -0.05 -1.10 7.93 -39.58 -0.31 -1.41 16 7 C -0.06 -1.24 3.25 -104.62 -0.34 -1.58 16 8 C 0.32 7.45 0.70 -94.07 -0.07 7.39 16 9 O -0.56 -12.56 11.98 -35.23 -0.42 -12.99 16 10 C -0.50 -12.96 7.19 -34.44 -0.25 -13.20 16 11 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 12 C 0.07 1.70 3.55 -17.82 -0.06 1.64 16 13 N -0.86 -21.80 8.03 55.43 0.45 -21.36 16 14 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C -0.05 -1.24 2.29 -104.62 -0.24 -1.48 16 19 C -0.12 -2.53 9.19 -39.59 -0.36 -2.89 16 20 C -0.15 -2.90 10.05 -39.59 -0.40 -3.30 16 21 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 22 C -0.15 -3.14 10.05 -39.58 -0.40 -3.54 16 23 C -0.04 -0.79 4.90 -39.59 -0.19 -0.98 16 24 H 0.07 1.23 6.96 -51.93 -0.36 0.87 16 25 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 26 H 0.07 1.19 3.69 -51.93 -0.19 1.00 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.13 3.20 5.57 -52.49 -0.29 2.91 16 31 H 0.35 6.61 6.13 45.56 0.28 6.89 16 32 H 0.27 6.56 8.32 -40.82 -0.34 6.22 16 33 H 0.11 2.35 7.54 -52.49 -0.40 1.95 16 34 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.14 3.31 5.48 -52.48 -0.29 3.03 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -26.84 290.69 -8.79 -35.63 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -3.75 Total: 14.71 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -4.42 Total: -35.54 kcal Atomic # 7 Polarization: -21.80 SS G_CDS: 0.45 Total: -21.36 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.42 Total: -12.99 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.84 -8.79 -35.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584596324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.000 kcal (2) G-P(sol) polarization free energy of solvation -26.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds