Wall clock time and date at job start Mon Mar 30 2020 07:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38254 * 119.99653 * 2 1 4 4 C 1.38216 * 119.99823 * 180.24789 * 3 2 1 5 5 C 1.38259 * 119.99744 * 359.79985 * 4 3 2 6 6 C 1.38210 * 120.00266 * 359.94285 * 5 4 3 7 7 C 1.38211 * 120.00115 * 179.76959 * 2 1 3 8 8 C 1.50703 * 120.00040 * 359.97438 * 7 2 1 9 9 O 1.42902 * 109.46948 * 67.47449 * 8 7 2 10 10 C 1.50698 * 109.47243 * 187.47330 * 8 7 2 11 11 H 1.07998 * 120.00683 * 241.52483 * 10 8 7 12 12 C 1.37887 * 119.99592 * 61.52326 * 10 8 7 13 13 N 1.31509 * 119.99986 * 2.63274 * 12 10 8 14 14 Si 1.86804 * 119.99669 * 182.63079 * 12 10 8 15 15 H 1.48499 * 109.46828 * 89.99866 * 14 12 10 16 16 H 1.48497 * 109.46910 * 209.99822 * 14 12 10 17 17 H 1.48494 * 109.47081 * 330.00114 * 14 12 10 18 18 C 1.50703 * 109.47388 * 307.47703 * 8 7 2 19 19 C 1.38236 * 120.00093 * 151.90785 * 18 8 7 20 20 C 1.38225 * 119.99915 * 179.97438 * 19 18 8 21 21 C 1.38236 * 120.00259 * 359.97438 * 20 19 18 22 22 C 1.38236 * 119.99825 * 0.02562 * 21 20 19 23 23 C 1.38231 * 119.99731 * 331.86350 * 18 8 7 24 24 H 1.09000 * 109.47309 * 276.75308 * 1 2 3 25 25 H 1.08999 * 109.46917 * 36.76232 * 1 2 3 26 26 H 1.09006 * 109.46527 * 156.75913 * 1 2 3 27 27 H 1.08000 * 120.00337 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.99741 * 179.76785 * 4 3 2 29 29 H 1.07996 * 119.99689 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.00102 * 179.97438 * 6 5 4 31 31 H 0.96699 * 114.00270 * 307.76991 * 9 8 7 32 32 H 0.96999 * 119.99516 * 185.00578 * 13 12 10 33 33 H 1.07998 * 119.99465 * 0.25676 * 19 18 8 34 34 H 1.07997 * 120.00215 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.00559 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.00366 * 179.97438 * 22 21 20 37 37 H 1.08006 * 120.00508 * 0.06560 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0052 5 6 4.2717 0.0000 -0.0062 6 6 3.5807 -1.1969 -0.0008 7 6 2.1982 -1.1969 0.0048 8 6 1.4447 -2.5021 0.0106 9 8 0.7591 -2.6618 -1.2329 10 6 2.4136 -3.6406 0.1999 11 1 2.5153 -4.3961 -0.5651 12 6 3.1704 -3.7179 1.3499 13 7 3.0094 -2.8272 2.3040 14 14 4.4241 -5.0878 1.5527 15 1 5.7352 -4.6420 1.0165 16 1 4.5655 -5.4202 2.9930 17 1 3.9683 -6.2899 0.8096 18 6 0.4453 -2.5001 1.1386 19 6 -0.7131 -3.2476 1.0370 20 6 -1.6295 -3.2463 2.0718 21 6 -1.3874 -2.4979 3.2085 22 6 -0.2291 -1.7504 3.3101 23 6 0.6873 -1.7516 2.2752 24 1 -0.3634 0.1208 1.0205 25 1 -0.3633 0.8233 -0.6151 26 1 -0.3632 -0.9444 -0.4056 27 1 1.6583 2.1327 0.0004 28 1 4.1203 2.1327 -0.0090 29 1 5.3517 0.0001 -0.0106 30 1 4.1207 -2.1322 -0.0020 31 1 0.2070 -1.9065 -1.4776 32 1 3.5908 -2.8378 3.0804 33 1 -0.8999 -3.8363 0.1509 34 1 -2.5347 -3.8299 1.9922 35 1 -2.1036 -2.4965 4.0169 36 1 -0.0400 -1.1653 4.1980 37 1 1.5922 -1.1673 2.3545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584596324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:04 Heat of formation + Delta-G solvation = 0.661015 kcal Electronic energy + Delta-G solvation = -21192.372313 eV Core-core repulsion = 18285.287555 eV Total energy + Delta-G solvation = -2907.084758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30375 -39.13524 -37.33022 -35.12447 -33.45819 -31.98231 -31.37094 -30.78138 -28.68130 -27.29263 -25.11751 -23.12023 -22.47986 -22.11054 -21.34926 -18.61839 -17.91681 -17.50755 -16.77878 -16.58285 -15.87505 -15.67154 -15.31296 -14.93324 -14.74453 -14.51604 -14.19481 -13.88265 -13.68964 -13.50745 -13.10344 -12.94934 -12.82399 -12.68881 -12.55876 -12.32075 -12.10776 -12.06988 -11.67578 -11.51505 -10.92672 -10.79340 -10.40598 -9.40794 -9.32213 -9.16751 -9.11770 -7.99115 -6.28744 0.73005 0.85794 0.88055 0.99684 1.36821 1.40287 1.47826 2.35936 3.10703 3.15260 3.34360 4.02292 4.19761 4.22051 4.29979 4.38726 4.44841 4.46591 4.54841 4.65498 4.80572 4.86249 4.89802 5.02515 5.13016 5.20735 5.21778 5.42308 5.47648 5.52865 5.62035 5.66311 5.83190 5.90119 5.93223 5.96568 6.07494 6.30481 6.39214 6.47507 6.54891 6.76394 7.18530 7.43358 8.84294 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.012763 C = 0.008264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.638608 B = 2193.367364 C = 3387.286965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.156 4.156 6 C -0.079 4.079 7 C -0.076 4.076 8 C 0.313 3.687 9 O -0.575 6.575 10 C -0.526 4.526 11 H 0.044 0.956 12 C 0.045 3.955 13 N -0.868 5.868 14 Si 0.941 3.059 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.279 1.279 18 C -0.063 4.063 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.161 4.161 23 C -0.045 4.045 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.363 0.637 32 H 0.262 0.738 33 H 0.105 0.895 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 7.302 -0.297 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.157 4.157 4 C -0.147 4.147 5 C -0.175 4.175 6 C -0.098 4.098 7 C -0.077 4.077 8 C 0.274 3.726 9 O -0.384 6.384 10 C -0.564 4.564 11 H 0.063 0.937 12 C -0.158 4.158 13 N -0.502 5.502 14 Si 0.767 3.233 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.204 1.204 18 C -0.064 4.064 19 C -0.156 4.156 20 C -0.164 4.164 21 C -0.156 4.156 22 C -0.179 4.179 23 C -0.064 4.064 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.140 0.860 30 H 0.123 0.877 31 H 0.212 0.788 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.914 6.735 -0.063 7.790 hybrid contribution 0.830 -0.699 0.340 1.137 sum -3.084 6.036 0.278 6.784 Atomic orbital electron populations 1.21015 0.90948 1.02426 1.02389 1.20022 0.96562 0.92896 1.00808 1.21122 0.94482 0.97337 1.02722 1.21237 0.94481 0.97851 1.01133 1.21314 0.99928 0.92954 1.03260 1.21222 0.94813 0.97664 0.96068 1.20558 0.94696 0.95013 0.97391 1.16695 0.86582 0.90822 0.78518 1.86594 1.64963 1.45635 1.41183 1.20844 1.22198 1.09913 1.03434 0.93728 1.25258 0.98350 0.97797 0.94392 1.70073 1.36362 1.35361 1.08449 0.85810 0.80093 0.80251 0.77163 1.19559 1.20806 1.20408 1.20455 0.93256 0.94907 0.97809 1.20974 0.95177 1.00011 0.99397 1.21120 0.99934 1.01209 0.94153 1.21157 0.97834 0.98319 0.98275 1.21273 0.95554 1.01970 0.99136 1.20996 0.96006 0.97107 0.92292 0.91680 0.89677 0.92319 0.84241 0.84124 0.86021 0.87737 0.78844 0.92781 0.87683 0.85016 0.84735 0.86428 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.65 8.01 71.24 0.57 -3.08 16 2 C -0.10 -3.91 4.87 -19.86 -0.10 -4.01 16 3 C -0.14 -4.60 9.73 22.27 0.22 -4.39 16 4 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 5 C -0.16 -5.99 10.05 22.27 0.22 -5.77 16 6 C -0.08 -3.65 7.93 22.27 0.18 -3.47 16 7 C -0.08 -3.42 3.25 -19.87 -0.06 -3.49 16 8 C 0.31 15.19 0.70 -13.03 -0.01 15.18 16 9 O -0.58 -26.77 11.98 -148.98 -1.79 -28.55 16 10 C -0.53 -28.60 7.19 25.60 0.18 -28.42 16 11 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 12 C 0.05 2.34 3.55 84.66 0.30 2.64 16 13 N -0.87 -44.81 8.03 21.45 0.17 -44.64 16 14 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 C -0.06 -2.89 2.29 -19.87 -0.05 -2.94 16 19 C -0.14 -5.84 9.19 22.27 0.20 -5.64 16 20 C -0.15 -5.30 10.05 22.27 0.22 -5.08 16 21 C -0.14 -4.81 10.05 22.27 0.22 -4.58 16 22 C -0.16 -6.26 10.05 22.27 0.22 -6.04 16 23 C -0.05 -2.01 4.90 22.27 0.11 -1.90 16 24 H 0.06 2.19 6.96 -2.39 -0.02 2.17 16 25 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 26 H 0.06 2.02 3.69 -2.38 -0.01 2.01 16 27 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 29 H 0.12 4.09 8.06 -2.91 -0.02 4.06 16 30 H 0.10 5.30 5.57 -2.91 -0.02 5.28 16 31 H 0.36 14.08 6.13 -74.06 -0.45 13.62 16 32 H 0.26 13.22 8.32 -92.71 -0.77 12.45 16 33 H 0.11 4.50 7.54 -2.91 -0.02 4.48 16 34 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.11 5.58 5.48 -2.91 -0.02 5.56 16 Total: -1.00 -59.29 290.69 3.71 -55.58 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.63 Total: 38.04 kcal Atomic # 6 Polarization: -67.66 SS G_CDS: 2.66 Total: -65.00 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.17 Total: -44.64 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.79 Total: -28.55 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -59.29 3.71 -55.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584596324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.242 kcal (2) G-P(sol) polarization free energy of solvation -59.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds