Wall clock time and date at job start Mon Mar 30 2020 07:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99733 * 2 1 4 4 H 1.48508 * 109.47091 * 90.00191 * 3 2 1 5 5 H 1.48498 * 109.47005 * 209.99815 * 3 2 1 6 6 H 1.48501 * 109.47695 * 330.00161 * 3 2 1 7 7 C 1.37870 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00400 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47003 * 59.99150 * 9 7 2 11 11 O 1.42906 * 109.46819 * 300.00137 * 9 7 2 12 12 C 1.52998 * 109.47572 * 179.97438 * 9 7 2 13 13 C 1.50692 * 109.47253 * 183.95187 * 12 9 7 14 14 C 1.38039 * 120.06631 * 261.57680 * 13 12 9 15 15 C 1.38298 * 120.12497 * 179.97438 * 14 13 12 16 16 C 1.38339 * 120.24422 * 359.97438 * 15 14 13 17 17 C 1.37990 * 120.12201 * 0.02562 * 16 15 14 18 18 C 1.39321 * 120.06427 * 81.30319 * 13 12 9 19 19 C 1.48400 * 120.11527 * 359.97438 * 18 13 12 20 20 C 1.39341 * 120.12025 * 236.65346 * 19 18 13 21 21 C 1.38019 * 119.87393 * 179.74718 * 20 19 18 22 22 C 1.38316 * 120.12089 * 0.50838 * 21 20 19 23 23 C 1.38328 * 120.24825 * 359.76751 * 22 21 20 24 24 C 1.38017 * 120.11510 * 359.97438 * 23 22 21 25 25 H 0.97002 * 119.99926 * 180.02562 * 1 2 3 26 26 H 0.96697 * 113.99423 * 299.99188 * 11 9 7 27 27 H 1.08999 * 109.46922 * 303.95537 * 12 9 7 28 28 H 1.08997 * 109.46955 * 63.95156 * 12 9 7 29 29 H 1.08004 * 119.93304 * 359.97438 * 14 13 12 30 30 H 1.07999 * 119.87599 * 179.97438 * 15 14 13 31 31 H 1.08001 * 119.93838 * 179.97438 * 16 15 14 32 32 H 1.07996 * 120.06441 * 179.97438 * 17 16 15 33 33 H 1.07995 * 120.05684 * 0.02562 * 20 19 18 34 34 H 1.08000 * 119.93618 * 180.23079 * 21 20 19 35 35 H 1.08001 * 119.87769 * 179.74650 * 22 21 20 36 36 H 1.07996 * 119.94263 * 179.97438 * 23 22 21 37 37 H 1.08008 * 120.05801 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4002 5 1 3.5466 1.4402 -0.7000 6 1 1.4465 2.6528 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 8 0.4290 -2.5746 1.1671 12 6 2.2453 -3.6620 0.0005 13 6 1.4944 -4.9649 -0.0974 14 6 1.2394 -5.7033 1.0407 15 6 0.5499 -6.8989 0.9523 16 6 0.1116 -7.3614 -0.2757 17 6 0.3611 -6.6314 -1.4198 18 6 1.0513 -5.4237 -1.3360 19 6 1.3167 -4.6310 -2.5621 20 6 0.2600 -4.2240 -3.3741 21 6 0.5122 -3.4824 -4.5104 22 6 1.8118 -3.1521 -4.8495 23 6 2.8652 -3.5584 -4.0501 24 6 2.6240 -4.2958 -2.9087 25 1 -0.4850 -0.8401 0.0004 26 1 0.9209 -2.5291 1.9983 27 1 2.9177 -3.5652 -0.8519 28 1 2.8244 -3.6449 0.9238 29 1 1.5789 -5.3466 2.0019 30 1 0.3529 -7.4736 1.8452 31 1 -0.4260 -8.2960 -0.3390 32 1 0.0189 -6.9935 -2.3780 33 1 -0.7548 -4.4846 -3.1121 34 1 -0.3064 -3.1633 -5.1385 35 1 2.0050 -2.5752 -5.7418 36 1 3.8780 -3.2981 -4.3197 37 1 3.4471 -4.6121 -2.2850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584611637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:52 Heat of formation + Delta-G solvation = -16.756666 kcal Electronic energy + Delta-G solvation = -20085.421788 eV Core-core repulsion = 17177.581743 eV Total energy + Delta-G solvation = -2907.840046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73847 -37.96684 -36.09754 -32.69877 -32.08318 -31.74259 -30.52697 -28.86162 -27.89056 -24.68080 -23.13181 -22.38707 -21.53153 -20.97184 -20.03575 -17.26878 -16.93756 -15.91388 -15.33793 -15.16021 -14.67363 -14.37317 -14.10901 -13.74072 -13.45759 -13.21216 -13.05617 -12.86773 -12.59905 -12.37602 -11.94524 -11.79606 -11.38954 -11.04343 -10.80764 -10.75435 -10.53887 -10.28172 -10.10142 -10.05477 -9.36849 -8.90325 -8.56568 -8.43999 -8.41771 -8.02787 -7.72665 -6.29877 -4.12662 1.31165 1.75103 1.77545 1.98143 3.42583 3.46080 3.61757 4.01544 4.21341 4.54236 4.92538 5.19093 5.23228 5.27087 5.28634 5.35916 5.40079 5.40533 5.68297 5.75278 5.83630 5.91937 6.04018 6.08179 6.20798 6.31864 6.35366 6.38861 6.50910 6.70777 6.75849 6.80064 6.80538 6.83343 6.91827 7.08625 7.30591 7.36277 7.59947 8.05946 8.40799 8.91140 9.17372 9.72929 11.09772 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.007902 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.180078 B = 3542.583304 C = 4783.724553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.035 3.965 3 Si 1.066 2.934 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.646 4.646 8 H 0.048 0.952 9 C 0.225 3.775 10 H 0.051 0.949 11 O -0.580 6.580 12 C -0.113 4.113 13 C -0.038 4.038 14 C -0.113 4.113 15 C -0.118 4.118 16 C -0.138 4.138 17 C -0.107 4.107 18 C -0.055 4.055 19 C -0.032 4.032 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.101 4.101 25 H 0.284 0.716 26 H 0.350 0.650 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -11.866 -4.986 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.174 4.174 3 Si 0.894 3.106 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.684 4.684 8 H 0.066 0.934 9 C 0.168 3.832 10 H 0.069 0.931 11 O -0.384 6.384 12 C -0.150 4.150 13 C -0.038 4.038 14 C -0.131 4.131 15 C -0.136 4.136 16 C -0.156 4.156 17 C -0.125 4.125 18 C -0.055 4.055 19 C -0.032 4.032 20 C -0.123 4.123 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.135 4.135 24 C -0.119 4.119 25 H 0.096 0.904 26 H 0.194 0.806 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.580 -10.283 -5.459 11.924 hybrid contribution 0.660 -1.515 0.482 1.722 sum 3.240 -11.798 -4.977 13.208 Atomic orbital electron populations 1.70592 1.06907 1.32261 1.43046 1.25728 0.96520 1.02301 0.92846 0.83619 0.74778 0.75430 0.76727 1.21462 1.21551 1.20975 1.22456 0.94253 0.92501 1.59158 0.93395 1.19448 0.88106 0.90347 0.85333 0.93124 1.86502 1.39378 1.96512 1.16048 1.21591 0.99120 0.92204 1.02130 1.20219 0.96200 0.95661 0.91736 1.20947 0.99634 0.94610 0.97954 1.21099 0.98679 0.96545 0.97326 1.20897 1.01872 1.00151 0.92708 1.21068 0.98780 0.94396 0.98281 1.18667 0.99975 0.94679 0.92190 1.18685 0.93354 0.97723 0.93456 1.21142 0.98342 0.98325 0.94506 1.21004 0.96786 0.98606 0.97227 1.21099 0.92901 1.00065 0.99875 1.20999 0.98993 0.98374 0.95114 1.21118 0.95873 0.98358 0.96512 0.90409 0.80557 0.90371 0.92181 0.86309 0.86628 0.86584 0.86489 0.86331 0.86273 0.86426 0.86224 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.68 13.53 55.43 0.75 -26.93 16 2 C 0.03 1.01 5.40 -17.82 -0.10 0.91 16 3 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.65 -18.10 8.76 -34.44 -0.30 -18.41 16 8 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 9 C 0.22 5.72 2.39 -27.88 -0.07 5.65 16 10 H 0.05 1.45 7.39 -51.93 -0.38 1.06 16 11 O -0.58 -14.86 11.74 -35.23 -0.41 -15.27 16 12 C -0.11 -2.37 4.45 -27.89 -0.12 -2.49 16 13 C -0.04 -0.72 4.88 -104.30 -0.51 -1.23 16 14 C -0.11 -1.92 9.66 -39.63 -0.38 -2.30 16 15 C -0.12 -1.74 10.04 -39.52 -0.40 -2.14 16 16 C -0.14 -1.96 10.03 -39.63 -0.40 -2.36 16 17 C -0.11 -1.66 9.63 -39.26 -0.38 -2.04 16 18 C -0.06 -0.98 5.40 -104.89 -0.57 -1.55 16 19 C -0.03 -0.57 4.26 -104.89 -0.45 -1.02 16 20 C -0.11 -1.80 9.63 -39.25 -0.38 -2.18 16 21 C -0.12 -1.85 10.03 -39.63 -0.40 -2.25 16 22 C -0.12 -1.83 10.04 -39.52 -0.40 -2.22 16 23 C -0.12 -1.81 10.03 -39.63 -0.40 -2.21 16 24 C -0.10 -1.70 7.81 -39.25 -0.31 -2.01 16 25 H 0.28 9.02 6.47 -40.82 -0.26 8.76 16 26 H 0.35 8.01 9.04 45.56 0.41 8.42 16 27 H 0.08 1.62 4.84 -51.93 -0.25 1.36 16 28 H 0.06 1.20 8.02 -51.93 -0.42 0.78 16 29 H 0.12 1.86 8.05 -52.48 -0.42 1.43 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.12 1.91 7.13 -52.48 -0.37 1.53 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -32.23 314.03 -9.42 -41.65 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -3.86 Total: 13.32 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: -5.54 Total: -37.82 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.75 Total: -26.93 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.41 Total: -15.27 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.23 -9.42 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584611637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.897 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds