Wall clock time and date at job start Mon Mar 30 2020 07:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99733 * 2 1 4 4 H 1.48508 * 109.47091 * 90.00191 * 3 2 1 5 5 H 1.48498 * 109.47005 * 209.99815 * 3 2 1 6 6 H 1.48501 * 109.47695 * 330.00161 * 3 2 1 7 7 C 1.37870 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00400 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47003 * 59.99150 * 9 7 2 11 11 O 1.42906 * 109.46819 * 300.00137 * 9 7 2 12 12 C 1.52998 * 109.47572 * 179.97438 * 9 7 2 13 13 C 1.50692 * 109.47253 * 183.95187 * 12 9 7 14 14 C 1.38039 * 120.06631 * 261.57680 * 13 12 9 15 15 C 1.38298 * 120.12497 * 179.97438 * 14 13 12 16 16 C 1.38339 * 120.24422 * 359.97438 * 15 14 13 17 17 C 1.37990 * 120.12201 * 0.02562 * 16 15 14 18 18 C 1.39321 * 120.06427 * 81.30319 * 13 12 9 19 19 C 1.48400 * 120.11527 * 359.97438 * 18 13 12 20 20 C 1.39341 * 120.12025 * 236.65346 * 19 18 13 21 21 C 1.38019 * 119.87393 * 179.74718 * 20 19 18 22 22 C 1.38316 * 120.12089 * 0.50838 * 21 20 19 23 23 C 1.38328 * 120.24825 * 359.76751 * 22 21 20 24 24 C 1.38017 * 120.11510 * 359.97438 * 23 22 21 25 25 H 0.97002 * 119.99926 * 180.02562 * 1 2 3 26 26 H 0.96697 * 113.99423 * 299.99188 * 11 9 7 27 27 H 1.08999 * 109.46922 * 303.95537 * 12 9 7 28 28 H 1.08997 * 109.46955 * 63.95156 * 12 9 7 29 29 H 1.08004 * 119.93304 * 359.97438 * 14 13 12 30 30 H 1.07999 * 119.87599 * 179.97438 * 15 14 13 31 31 H 1.08001 * 119.93838 * 179.97438 * 16 15 14 32 32 H 1.07996 * 120.06441 * 179.97438 * 17 16 15 33 33 H 1.07995 * 120.05684 * 0.02562 * 20 19 18 34 34 H 1.08000 * 119.93618 * 180.23079 * 21 20 19 35 35 H 1.08001 * 119.87769 * 179.74650 * 22 21 20 36 36 H 1.07996 * 119.94263 * 179.97438 * 23 22 21 37 37 H 1.08008 * 120.05801 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4002 5 1 3.5466 1.4402 -0.7000 6 1 1.4465 2.6528 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 8 0.4290 -2.5746 1.1671 12 6 2.2453 -3.6620 0.0005 13 6 1.4944 -4.9649 -0.0974 14 6 1.2394 -5.7033 1.0407 15 6 0.5499 -6.8989 0.9523 16 6 0.1116 -7.3614 -0.2757 17 6 0.3611 -6.6314 -1.4198 18 6 1.0513 -5.4237 -1.3360 19 6 1.3167 -4.6310 -2.5621 20 6 0.2600 -4.2240 -3.3741 21 6 0.5122 -3.4824 -4.5104 22 6 1.8118 -3.1521 -4.8495 23 6 2.8652 -3.5584 -4.0501 24 6 2.6240 -4.2958 -2.9087 25 1 -0.4850 -0.8401 0.0004 26 1 0.9209 -2.5291 1.9983 27 1 2.9177 -3.5652 -0.8519 28 1 2.8244 -3.6449 0.9238 29 1 1.5789 -5.3466 2.0019 30 1 0.3529 -7.4736 1.8452 31 1 -0.4260 -8.2960 -0.3390 32 1 0.0189 -6.9935 -2.3780 33 1 -0.7548 -4.4846 -3.1121 34 1 -0.3064 -3.1633 -5.1385 35 1 2.0050 -2.5752 -5.7418 36 1 3.8780 -3.2981 -4.3197 37 1 3.4471 -4.6121 -2.2850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584611637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:52 Heat of formation + Delta-G solvation = -35.099179 kcal Electronic energy + Delta-G solvation = -20086.217179 eV Core-core repulsion = 17177.581743 eV Total energy + Delta-G solvation = -2908.635437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02998 -39.21521 -38.02388 -34.27575 -34.04827 -33.12949 -31.76988 -30.23002 -29.46898 -26.59459 -24.41721 -23.89865 -23.05411 -22.37100 -21.40803 -19.37430 -18.19149 -17.19923 -16.92998 -16.66257 -16.09073 -15.80827 -15.64085 -15.36429 -15.18086 -14.79291 -14.43167 -14.30174 -14.17806 -13.66423 -13.52269 -13.25393 -12.76995 -12.60520 -12.52871 -12.16590 -12.05170 -11.95669 -11.85534 -11.56317 -11.30643 -10.62811 -10.27992 -10.04160 -9.82451 -9.58163 -9.11808 -8.58894 -6.43386 0.06450 0.49293 0.51565 0.74460 1.50509 1.59321 1.76628 2.55434 2.77559 2.95515 3.18724 3.69134 3.89652 3.98160 4.02944 4.08096 4.13969 4.20464 4.23611 4.39698 4.55714 4.60027 4.64040 4.69031 4.73339 4.92312 5.03233 5.11282 5.12664 5.22348 5.44637 5.48986 5.54986 5.58514 5.59298 5.65229 5.82872 5.89637 6.08694 6.12479 6.18234 6.57733 7.19658 7.52967 8.77374 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.007902 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.180078 B = 3542.583304 C = 4783.724553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.017 4.017 3 Si 1.113 2.887 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.285 1.285 7 C -0.653 4.653 8 H 0.048 0.952 9 C 0.231 3.769 10 H 0.014 0.986 11 O -0.591 6.591 12 C -0.097 4.097 13 C -0.069 4.069 14 C -0.125 4.125 15 C -0.118 4.118 16 C -0.129 4.129 17 C -0.114 4.114 18 C -0.072 4.072 19 C -0.050 4.050 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.119 4.119 25 H 0.265 0.735 26 H 0.360 0.640 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.125 0.875 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -12.627 -5.132 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.935 3.065 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.210 1.210 7 C -0.691 4.691 8 H 0.067 0.933 9 C 0.175 3.825 10 H 0.031 0.969 11 O -0.397 6.397 12 C -0.135 4.135 13 C -0.069 4.069 14 C -0.143 4.143 15 C -0.136 4.136 16 C -0.147 4.147 17 C -0.132 4.132 18 C -0.072 4.072 19 C -0.050 4.050 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.137 4.137 25 H 0.076 0.924 26 H 0.206 0.794 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.143 0.857 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.152 0.848 33 H 0.136 0.864 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.283 -11.069 -5.597 12.831 hybrid contribution 0.419 -1.379 0.518 1.532 sum 3.702 -12.448 -5.079 13.945 Atomic orbital electron populations 1.70743 1.08026 1.31040 1.45910 1.27236 0.96489 1.06327 0.91812 0.83011 0.74260 0.71442 0.77777 1.19746 1.19497 1.21039 1.22845 0.94465 0.93829 1.57924 0.93335 1.19185 0.87916 0.91502 0.83944 0.96864 1.86442 1.39958 1.96622 1.16632 1.21270 0.98044 0.92000 1.02151 1.20107 0.98136 0.95478 0.93149 1.21152 1.00100 0.95528 0.97551 1.21483 0.97392 0.95746 0.98937 1.21363 1.00532 1.00917 0.91855 1.21362 0.98266 0.93710 0.99859 1.18883 1.00617 0.95755 0.91901 1.18893 0.93942 0.98333 0.93836 1.21327 0.98352 0.99418 0.95458 1.21363 0.98066 0.97998 0.96999 1.21504 0.92452 0.99796 1.00725 1.21381 1.00539 0.97619 0.94579 1.21300 0.95765 0.99235 0.97425 0.92426 0.79375 0.90674 0.91754 0.85693 0.83356 0.82916 0.84755 0.86388 0.84083 0.83459 0.83771 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.28 13.53 21.44 0.29 -57.99 16 2 C -0.02 -0.98 5.40 84.65 0.46 -0.53 16 3 Si 1.11 50.71 29.90 68.60 2.05 52.76 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.65 -37.06 8.76 25.60 0.22 -36.83 16 8 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 9 C 0.23 12.14 2.39 29.85 0.07 12.21 16 10 H 0.01 0.81 7.39 -2.39 -0.02 0.79 16 11 O -0.59 -31.06 11.74 -148.98 -1.75 -32.81 16 12 C -0.10 -4.16 4.45 29.84 0.13 -4.03 16 13 C -0.07 -2.62 4.88 -19.65 -0.10 -2.72 16 14 C -0.13 -4.13 9.66 22.24 0.21 -3.92 16 15 C -0.12 -3.17 10.04 22.31 0.22 -2.95 16 16 C -0.13 -3.30 10.03 22.23 0.22 -3.08 16 17 C -0.11 -3.40 9.63 22.48 0.22 -3.18 16 18 C -0.07 -2.58 5.40 -20.04 -0.11 -2.69 16 19 C -0.05 -1.83 4.26 -20.04 -0.09 -1.91 16 20 C -0.13 -4.47 9.63 22.48 0.22 -4.26 16 21 C -0.13 -3.93 10.03 22.24 0.22 -3.70 16 22 C -0.13 -3.69 10.04 22.31 0.22 -3.46 16 23 C -0.12 -3.75 10.03 22.24 0.22 -3.53 16 24 C -0.12 -4.09 7.81 22.48 0.18 -3.92 16 25 H 0.27 17.48 6.47 -92.71 -0.60 16.88 16 26 H 0.36 16.80 9.04 -74.06 -0.67 16.14 16 27 H 0.07 3.19 4.84 -2.39 -0.01 3.18 16 28 H 0.06 2.61 8.02 -2.39 -0.02 2.59 16 29 H 0.13 3.82 8.05 -2.91 -0.02 3.80 16 30 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 34 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.12 3.98 7.13 -2.91 -0.02 3.96 16 Total: -1.00 -70.63 314.03 3.70 -66.93 By element: Atomic # 1 Polarization: 39.03 SS G_CDS: 0.57 Total: 39.60 kcal Atomic # 6 Polarization: -71.03 SS G_CDS: 2.54 Total: -68.50 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.29 Total: -57.99 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.75 Total: -32.81 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -70.63 3.70 -66.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584611637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.833 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds