Wall clock time and date at job start Mon Mar 30 2020 07:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99741 * 2 1 4 4 H 1.48508 * 109.47007 * 239.99875 * 3 2 1 5 5 H 1.48499 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47027 * 120.00206 * 3 2 1 7 7 C 1.37875 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00139 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47322 * 60.00459 * 9 7 2 11 11 O 1.42903 * 109.47213 * 300.00234 * 9 7 2 12 12 C 1.53003 * 109.47309 * 180.02562 * 9 7 2 13 13 C 1.50696 * 109.47328 * 184.99903 * 12 9 7 14 14 C 1.38325 * 119.87480 * 90.00440 * 13 12 9 15 15 C 1.38018 * 120.11856 * 179.97438 * 14 13 12 16 16 C 1.39336 * 119.88184 * 359.97438 * 15 14 13 17 17 C 1.48385 * 120.12611 * 179.97438 * 16 15 14 18 18 C 1.39336 * 120.12611 * 180.02562 * 17 16 15 19 19 C 1.38018 * 119.88184 * 180.02562 * 18 17 16 20 20 C 1.38325 * 120.11852 * 359.97438 * 19 18 17 21 21 C 1.38323 * 120.24425 * 0.26101 * 20 19 18 22 22 C 1.38017 * 120.11916 * 359.48375 * 21 20 19 23 23 C 1.39348 * 119.75465 * 0.25348 * 16 15 14 24 24 C 1.38012 * 119.87390 * 359.49361 * 23 16 15 25 25 H 0.96997 * 120.00207 * 0.02562 * 1 2 3 26 26 H 0.96693 * 114.00276 * 299.99899 * 11 9 7 27 27 H 1.09006 * 109.46554 * 65.00049 * 12 9 7 28 28 H 1.08997 * 109.47187 * 305.00974 * 12 9 7 29 29 H 1.07998 * 119.94059 * 359.94891 * 14 13 12 30 30 H 1.08004 * 120.06312 * 179.97438 * 15 14 13 31 31 H 1.08004 * 120.05503 * 0.02562 * 18 17 16 32 32 H 1.07997 * 119.94085 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.87397 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.93885 * 179.74853 * 21 20 19 35 35 H 1.08001 * 120.05836 * 180.24189 * 22 21 20 36 36 H 1.08003 * 120.05757 * 179.74578 * 23 16 15 37 37 H 1.08005 * 119.93908 * 180.25699 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 8 0.4299 -2.5751 1.1665 12 6 2.2453 -3.6621 -0.0005 13 6 1.4960 -4.9636 -0.1243 14 6 1.2329 -5.4909 -1.3758 15 6 0.5474 -6.6828 -1.4950 16 6 0.1207 -7.3556 -0.3519 17 6 -0.6171 -8.6372 -0.4738 18 6 -1.0443 -9.3097 0.6694 19 6 -1.7298 -10.5017 0.5501 20 6 -1.9933 -11.0286 -0.7014 21 6 -1.5673 -10.3678 -1.8394 22 6 -0.8857 -9.1725 -1.7319 23 6 0.3843 -6.8174 0.9062 24 6 1.0751 -5.6275 1.0138 25 1 -0.4850 0.8400 -0.0004 26 1 0.9223 -2.5299 1.9975 27 1 2.8115 -3.6559 0.9309 28 1 2.9295 -3.5551 -0.8422 29 1 1.5641 -4.9686 -2.2612 30 1 0.3421 -7.0935 -2.4726 31 1 -0.8394 -8.8988 1.6469 32 1 -2.0617 -11.0235 1.4355 33 1 -2.5296 -11.9619 -0.7900 34 1 -1.7723 -10.7857 -2.8139 35 1 -0.5570 -8.6553 -2.6213 36 1 0.0522 -7.3327 1.7954 37 1 1.2837 -5.2116 1.9885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584611790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:00 Heat of formation + Delta-G solvation = -14.069330 kcal Electronic energy + Delta-G solvation = -18818.079734 eV Core-core repulsion = 15910.356220 eV Total energy + Delta-G solvation = -2907.723514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74854 -38.30856 -35.85775 -33.00139 -32.10872 -31.37788 -30.32681 -30.22983 -27.61136 -25.13222 -23.37439 -22.77598 -21.28274 -21.01046 -19.98832 -17.53419 -16.95256 -15.86111 -15.34478 -15.05763 -14.61403 -14.33247 -14.17423 -14.08129 -13.70886 -13.35483 -13.26446 -13.00923 -12.77988 -12.71533 -11.98062 -11.42498 -11.37490 -11.14351 -11.00285 -10.95975 -10.72823 -10.55602 -10.32076 -10.00221 -9.54711 -9.01673 -9.01188 -8.59052 -8.55056 -8.24078 -7.54857 -6.00733 -4.20008 0.84124 1.34200 1.80949 2.13980 3.28174 3.33815 3.35260 3.73426 4.31263 4.39835 4.71177 4.74984 4.88162 4.99397 5.25082 5.26989 5.29215 5.39282 5.39818 5.51175 5.77389 5.82429 5.94924 5.97136 6.10177 6.21611 6.30456 6.39440 6.43119 6.45921 6.49344 6.59078 6.78323 6.87694 6.93665 6.96465 7.15024 7.39212 7.72293 7.84682 8.16848 8.82972 9.38771 9.57792 11.03000 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.046209 B = 0.003361 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.798787 B = 8329.070061 C = 8431.732389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.079 3.921 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.575 4.575 8 H 0.056 0.944 9 C 0.237 3.763 10 H 0.056 0.944 11 O -0.562 6.562 12 C -0.114 4.114 13 C -0.043 4.043 14 C -0.123 4.123 15 C -0.106 4.106 16 C -0.077 4.077 17 C -0.026 4.026 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.106 4.106 24 C -0.108 4.108 25 H 0.261 0.739 26 H 0.342 0.658 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -18.940 -0.672 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.613 4.613 8 H 0.074 0.926 9 C 0.180 3.820 10 H 0.074 0.926 11 O -0.364 6.364 12 C -0.152 4.152 13 C -0.043 4.043 14 C -0.141 4.141 15 C -0.124 4.124 16 C -0.077 4.077 17 C -0.026 4.026 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.149 4.149 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.124 4.124 24 C -0.126 4.126 25 H 0.071 0.929 26 H 0.186 0.814 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.466 -18.874 -1.142 18.965 hybrid contribution 0.877 1.057 0.318 1.409 sum -0.588 -17.818 -0.824 17.846 Atomic orbital electron populations 1.70073 1.05941 1.26563 1.46864 1.25056 0.94698 0.99132 0.93845 0.86730 0.79711 0.83191 0.78694 1.20155 1.21202 1.20138 1.21657 0.93147 0.91491 1.54972 0.92596 1.19332 0.87661 0.88786 0.86233 0.92631 1.86591 1.38303 1.96257 1.15232 1.21620 0.99015 0.92692 1.01885 1.20287 0.95864 0.95465 0.92669 1.21006 0.99906 0.95688 0.97508 1.21089 0.98483 0.95443 0.97406 1.18610 1.00969 0.94367 0.93784 1.18894 0.96794 0.93660 0.93259 1.21270 0.98667 0.95319 0.98307 1.21069 0.98954 0.96036 0.97510 1.21145 1.00920 1.00160 0.92716 1.21066 0.98590 0.95400 0.98525 1.21268 0.99242 0.96046 0.97044 1.21115 0.98834 0.96214 0.96227 1.20944 0.98546 0.94470 0.98608 0.92910 0.81424 0.91930 0.91303 0.86033 0.86392 0.85728 0.86126 0.86354 0.86137 0.85753 0.86399 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 12.84 55.43 0.71 -24.75 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.57 -15.60 8.76 -34.44 -0.30 -15.91 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.24 5.94 2.81 -27.88 -0.08 5.86 16 10 H 0.06 1.56 8.14 -51.93 -0.42 1.13 16 11 O -0.56 -14.29 12.22 -35.23 -0.43 -14.72 16 12 C -0.11 -2.29 4.96 -27.88 -0.14 -2.43 16 13 C -0.04 -0.79 4.97 -104.56 -0.52 -1.31 16 14 C -0.12 -2.09 9.68 -39.63 -0.38 -2.47 16 15 C -0.11 -1.62 9.43 -39.25 -0.37 -1.99 16 16 C -0.08 -1.17 5.88 -104.90 -0.62 -1.79 16 17 C -0.03 -0.35 5.88 -104.90 -0.62 -0.97 16 18 C -0.12 -1.41 9.43 -39.25 -0.37 -1.78 16 19 C -0.12 -1.21 10.03 -39.63 -0.40 -1.61 16 20 C -0.13 -1.29 10.04 -39.52 -0.40 -1.69 16 21 C -0.12 -1.21 10.03 -39.63 -0.40 -1.61 16 22 C -0.12 -1.41 9.43 -39.25 -0.37 -1.78 16 23 C -0.11 -1.62 9.43 -39.25 -0.37 -1.99 16 24 C -0.11 -1.82 9.38 -39.63 -0.37 -2.19 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.34 7.66 9.04 45.56 0.41 8.08 16 27 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 28 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 29 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.12 1.50 6.21 -52.48 -0.33 1.17 16 31 H 0.12 1.33 6.21 -52.48 -0.33 1.01 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 1.33 6.21 -52.49 -0.33 1.00 16 36 H 0.12 1.51 6.21 -52.48 -0.33 1.18 16 37 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 315.98 15.07 4.76 4.76 Total: -1.00 -31.24 315.98 -9.58 -40.82 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.81 Total: 9.42 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -5.80 Total: -31.56 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.71 Total: -24.75 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.43 Total: -14.72 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.24 -9.58 -40.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584611790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.752 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds