Wall clock time and date at job start Mon Mar 30 2020 07:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99741 * 2 1 4 4 H 1.48508 * 109.47007 * 239.99875 * 3 2 1 5 5 H 1.48499 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47027 * 120.00206 * 3 2 1 7 7 C 1.37875 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00139 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47322 * 60.00459 * 9 7 2 11 11 O 1.42903 * 109.47213 * 300.00234 * 9 7 2 12 12 C 1.53003 * 109.47309 * 180.02562 * 9 7 2 13 13 C 1.50696 * 109.47328 * 184.99903 * 12 9 7 14 14 C 1.38325 * 119.87480 * 90.00440 * 13 12 9 15 15 C 1.38018 * 120.11856 * 179.97438 * 14 13 12 16 16 C 1.39336 * 119.88184 * 359.97438 * 15 14 13 17 17 C 1.48385 * 120.12611 * 179.97438 * 16 15 14 18 18 C 1.39336 * 120.12611 * 180.02562 * 17 16 15 19 19 C 1.38018 * 119.88184 * 180.02562 * 18 17 16 20 20 C 1.38325 * 120.11852 * 359.97438 * 19 18 17 21 21 C 1.38323 * 120.24425 * 0.26101 * 20 19 18 22 22 C 1.38017 * 120.11916 * 359.48375 * 21 20 19 23 23 C 1.39348 * 119.75465 * 0.25348 * 16 15 14 24 24 C 1.38012 * 119.87390 * 359.49361 * 23 16 15 25 25 H 0.96997 * 120.00207 * 0.02562 * 1 2 3 26 26 H 0.96693 * 114.00276 * 299.99899 * 11 9 7 27 27 H 1.09006 * 109.46554 * 65.00049 * 12 9 7 28 28 H 1.08997 * 109.47187 * 305.00974 * 12 9 7 29 29 H 1.07998 * 119.94059 * 359.94891 * 14 13 12 30 30 H 1.08004 * 120.06312 * 179.97438 * 15 14 13 31 31 H 1.08004 * 120.05503 * 0.02562 * 18 17 16 32 32 H 1.07997 * 119.94085 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.87397 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.93885 * 179.74853 * 21 20 19 35 35 H 1.08001 * 120.05836 * 180.24189 * 22 21 20 36 36 H 1.08003 * 120.05757 * 179.74578 * 23 16 15 37 37 H 1.08005 * 119.93908 * 180.25699 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 8 0.4299 -2.5751 1.1665 12 6 2.2453 -3.6621 -0.0005 13 6 1.4960 -4.9636 -0.1243 14 6 1.2329 -5.4909 -1.3758 15 6 0.5474 -6.6828 -1.4950 16 6 0.1207 -7.3556 -0.3519 17 6 -0.6171 -8.6372 -0.4738 18 6 -1.0443 -9.3097 0.6694 19 6 -1.7298 -10.5017 0.5501 20 6 -1.9933 -11.0286 -0.7014 21 6 -1.5673 -10.3678 -1.8394 22 6 -0.8857 -9.1725 -1.7319 23 6 0.3843 -6.8174 0.9062 24 6 1.0751 -5.6275 1.0138 25 1 -0.4850 0.8400 -0.0004 26 1 0.9223 -2.5299 1.9975 27 1 2.8115 -3.6559 0.9309 28 1 2.9295 -3.5551 -0.8422 29 1 1.5641 -4.9686 -2.2612 30 1 0.3421 -7.0935 -2.4726 31 1 -0.8394 -8.8988 1.6469 32 1 -2.0617 -11.0235 1.4355 33 1 -2.5296 -11.9619 -0.7900 34 1 -1.7723 -10.7857 -2.8139 35 1 -0.5570 -8.6553 -2.6213 36 1 0.0522 -7.3327 1.7954 37 1 1.2837 -5.2116 1.9885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584611790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:59 Heat of formation + Delta-G solvation = -31.467843 kcal Electronic energy + Delta-G solvation = -18818.834190 eV Core-core repulsion = 15910.356220 eV Total energy + Delta-G solvation = -2908.477970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81297 -39.41293 -37.67591 -34.37309 -34.13730 -32.36665 -31.61059 -31.34365 -29.18298 -26.83043 -24.40050 -24.09316 -22.56972 -22.28741 -21.32491 -19.09050 -18.37759 -16.81077 -16.67723 -16.52623 -16.48603 -15.94919 -15.45811 -15.13541 -14.93949 -14.79845 -14.64896 -14.16671 -14.00071 -13.86720 -13.36584 -13.02671 -12.93500 -12.80129 -12.53132 -12.29338 -12.13765 -12.00130 -11.75864 -11.47014 -11.16611 -10.69846 -10.55051 -10.05578 -9.83922 -9.79617 -8.76860 -8.12229 -6.39489 -0.18692 0.52125 0.55751 1.04654 1.40892 1.42527 1.50779 2.39234 2.74871 3.12675 3.19366 3.69925 3.81271 4.02191 4.06525 4.16727 4.17867 4.32558 4.37506 4.45718 4.56707 4.60514 4.62624 4.78331 4.87318 4.93978 5.10263 5.12740 5.23876 5.26944 5.40173 5.46327 5.59990 5.63090 5.64196 5.70988 5.85385 5.91309 6.06813 6.11137 6.16656 6.73008 7.33920 7.57392 8.91154 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.046209 B = 0.003361 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.798787 B = 8329.070061 C = 8431.732389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.588 4.588 8 H 0.062 0.938 9 C 0.239 3.761 10 H 0.015 0.985 11 O -0.577 6.577 12 C -0.097 4.097 13 C -0.073 4.073 14 C -0.135 4.135 15 C -0.113 4.113 16 C -0.073 4.073 17 C -0.057 4.057 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.114 4.114 24 C -0.116 4.116 25 H 0.261 0.739 26 H 0.355 0.645 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -20.782 -0.538 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.625 4.625 8 H 0.081 0.919 9 C 0.181 3.819 10 H 0.033 0.967 11 O -0.380 6.380 12 C -0.135 4.135 13 C -0.073 4.073 14 C -0.153 4.153 15 C -0.131 4.131 16 C -0.073 4.073 17 C -0.057 4.057 18 C -0.146 4.146 19 C -0.140 4.140 20 C -0.145 4.145 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.131 4.131 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.199 0.801 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.429 -20.727 -1.004 20.801 hybrid contribution 0.776 1.431 0.261 1.649 sum -0.653 -19.296 -0.743 19.322 Atomic orbital electron populations 1.70225 1.07753 1.27405 1.48488 1.25945 0.95476 1.03024 0.93411 0.85602 0.78330 0.78397 0.79183 1.19300 1.21154 1.19043 1.22093 0.93652 0.92656 1.54145 0.91942 1.19136 0.87610 0.90411 0.84723 0.96712 1.86522 1.39145 1.96414 1.15963 1.21285 0.97853 0.91912 1.02404 1.20204 0.97812 0.95444 0.93885 1.21161 1.00374 0.96524 0.97239 1.21350 0.98060 0.94879 0.98822 1.18945 0.99782 0.94932 0.93597 1.18956 0.98557 0.93573 0.94624 1.21481 0.98851 0.96027 0.98219 1.21416 0.98236 0.95468 0.98922 1.21582 0.99785 1.00843 0.92267 1.21412 0.97822 0.94738 1.00097 1.21479 0.99524 0.96882 0.96775 1.21393 0.98474 0.95806 0.97449 1.21092 0.98737 0.95108 0.98447 0.93038 0.80065 0.90981 0.91173 0.85796 0.84098 0.85060 0.83636 0.83469 0.83677 0.85142 0.84045 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.72 12.84 21.45 0.28 -54.45 16 2 C 0.02 1.33 5.40 84.65 0.46 1.79 16 3 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.59 -32.36 8.76 25.60 0.22 -32.14 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.24 12.34 2.81 29.85 0.08 12.43 16 10 H 0.01 0.88 8.14 -2.39 -0.02 0.86 16 11 O -0.58 -30.18 12.22 -148.98 -1.82 -32.00 16 12 C -0.10 -3.97 4.96 29.85 0.15 -3.82 16 13 C -0.07 -2.76 4.97 -19.83 -0.10 -2.85 16 14 C -0.13 -4.69 9.68 22.24 0.22 -4.47 16 15 C -0.11 -3.45 9.43 22.48 0.21 -3.24 16 16 C -0.07 -2.17 5.88 -20.04 -0.12 -2.28 16 17 C -0.06 -1.47 5.88 -20.04 -0.12 -1.58 16 18 C -0.13 -2.83 9.43 22.48 0.21 -2.62 16 19 C -0.12 -2.17 10.03 22.24 0.22 -1.94 16 20 C -0.13 -2.05 10.04 22.31 0.22 -1.83 16 21 C -0.12 -2.18 10.03 22.24 0.22 -1.96 16 22 C -0.13 -2.86 9.43 22.48 0.21 -2.65 16 23 C -0.11 -3.42 9.43 22.48 0.21 -3.21 16 24 C -0.12 -3.95 9.38 22.24 0.21 -3.74 16 25 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 26 H 0.35 16.20 9.04 -74.06 -0.67 15.53 16 27 H 0.07 2.75 8.08 -2.38 -0.02 2.73 16 28 H 0.07 2.78 8.08 -2.39 -0.02 2.76 16 29 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.14 3.48 6.21 -2.91 -0.02 3.46 16 31 H 0.13 2.58 6.21 -2.91 -0.02 2.56 16 32 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.13 2.59 6.21 -2.91 -0.02 2.57 16 36 H 0.14 3.45 6.21 -2.91 -0.02 3.43 16 37 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -67.91 315.98 3.41 -64.50 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.41 Total: 30.60 kcal Atomic # 6 Polarization: -56.64 SS G_CDS: 2.52 Total: -54.12 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.28 Total: -54.45 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.82 Total: -32.00 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.91 3.41 -64.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584611790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.029 kcal (2) G-P(sol) polarization free energy of solvation -67.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds