Wall clock time and date at job start Mon Mar 30 2020 07:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00649 * 2 1 4 4 H 1.48501 * 109.46973 * 240.00284 * 3 2 1 5 5 H 1.48498 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47179 * 120.00099 * 3 2 1 7 7 C 1.37879 * 119.99334 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00354 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47563 * 59.99371 * 9 7 2 11 11 O 1.42898 * 109.46970 * 299.99697 * 9 7 2 12 12 C 1.52999 * 109.47478 * 179.97438 * 9 7 2 13 13 C 1.50700 * 109.47243 * 184.99673 * 12 9 7 14 14 C 1.38347 * 119.93898 * 89.99993 * 13 12 9 15 15 C 1.38300 * 120.24565 * 179.97438 * 14 13 12 16 16 C 1.38039 * 120.11939 * 0.27954 * 15 14 13 17 17 C 1.39318 * 119.87463 * 359.42240 * 16 15 14 18 18 C 1.48394 * 120.11863 * 180.30151 * 17 16 15 19 19 C 1.39338 * 120.11853 * 180.02562 * 18 17 16 20 20 C 1.38021 * 119.87857 * 179.69851 * 19 18 17 21 21 C 1.38322 * 120.11609 * 0.59655 * 20 19 18 22 22 C 1.38327 * 120.24455 * 359.67730 * 21 20 19 23 23 C 1.38017 * 120.12244 * 0.02562 * 22 21 20 24 24 C 1.37990 * 119.94195 * 269.97437 * 13 12 9 25 25 H 0.97006 * 119.99690 * 359.97438 * 1 2 3 26 26 H 0.96708 * 114.00257 * 299.99864 * 11 9 7 27 27 H 1.08992 * 109.47250 * 64.99253 * 12 9 7 28 28 H 1.09005 * 109.46768 * 304.99970 * 12 9 7 29 29 H 1.08007 * 119.87499 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.93785 * 179.97438 * 15 14 13 31 31 H 1.07998 * 120.06334 * 179.72231 * 16 15 14 32 32 H 1.08004 * 120.06601 * 359.97438 * 19 18 17 33 33 H 1.07991 * 119.94616 * 180.31691 * 20 19 18 34 34 H 1.08007 * 119.88018 * 179.69807 * 21 20 19 35 35 H 1.08001 * 119.93587 * 179.97438 * 22 21 20 36 36 H 1.07995 * 120.05895 * 180.02562 * 23 22 21 37 37 H 1.08005 * 120.06111 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6244 -2.5571 -0.8896 11 8 0.4289 -2.5746 1.1670 12 6 2.2449 -3.6622 0.0005 13 6 1.4954 -4.9637 -0.1232 14 6 1.2314 -5.4922 -1.3742 15 6 0.5445 -6.6864 -1.4951 16 6 0.1134 -7.3549 -0.3669 17 6 0.3820 -6.8305 0.8955 18 6 -0.0730 -7.5480 2.1121 19 6 0.1951 -7.0232 3.3747 20 6 -0.2358 -7.6915 4.5028 21 6 -0.9220 -8.8864 4.3819 22 6 -1.1860 -9.4148 3.1311 23 6 -0.7650 -8.7518 1.9962 24 6 1.0741 -5.6265 1.0114 25 1 -0.4850 0.8401 0.0004 26 1 0.9207 -2.5291 1.9985 27 1 2.8112 -3.6561 0.9318 28 1 2.9291 -3.5554 -0.8413 29 1 1.5629 -4.9701 -2.2597 30 1 0.3407 -7.0943 -2.4742 31 1 -0.4268 -8.2852 -0.4626 32 1 0.7354 -6.0929 3.4704 33 1 -0.0330 -7.2831 5.4818 34 1 -1.2533 -9.4087 5.2674 35 1 -1.7218 -10.3483 3.0425 36 1 -0.9720 -9.1650 1.0201 37 1 1.2815 -5.2135 1.9876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584611792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:06 Heat of formation + Delta-G solvation = -13.826590 kcal Electronic energy + Delta-G solvation = -19092.559174 eV Core-core repulsion = 16184.846186 eV Total energy + Delta-G solvation = -2907.712988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71819 -38.24836 -35.84112 -32.83881 -32.13410 -31.71369 -30.85694 -28.89310 -27.97086 -25.16782 -23.39811 -22.90468 -21.28365 -20.95609 -19.71966 -17.42928 -16.84876 -15.74709 -15.49209 -15.29150 -14.61658 -14.35497 -14.21251 -13.87897 -13.55840 -13.33183 -13.21085 -13.04810 -12.89013 -12.41336 -11.96528 -11.37620 -11.36193 -11.13104 -10.98741 -10.91323 -10.78025 -10.49521 -10.34937 -9.98587 -9.53684 -9.13685 -8.93752 -8.57297 -8.45877 -8.00281 -7.69361 -6.00265 -4.19458 0.88021 1.42026 1.83538 2.15978 3.28498 3.34147 3.35591 3.78758 4.33193 4.40754 4.74880 4.81511 4.95525 5.07257 5.25970 5.28104 5.31772 5.43533 5.48220 5.56364 5.74269 5.89456 5.94766 6.02071 6.11191 6.22881 6.38626 6.40987 6.47022 6.50742 6.52990 6.59766 6.81001 6.89597 6.97001 7.00301 7.15741 7.40042 7.72926 7.85241 8.17520 8.83501 9.39188 9.58325 11.03517 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.004238 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.542773 B = 6604.649166 C = 7325.946755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.575 4.575 8 H 0.056 0.944 9 C 0.237 3.763 10 H 0.056 0.944 11 O -0.561 6.561 12 C -0.113 4.113 13 C -0.051 4.051 14 C -0.118 4.118 15 C -0.121 4.121 16 C -0.127 4.127 17 C -0.057 4.057 18 C -0.031 4.031 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.093 4.093 25 H 0.261 0.739 26 H 0.342 0.658 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 -16.936 4.205 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.613 4.613 8 H 0.074 0.926 9 C 0.180 3.820 10 H 0.073 0.927 11 O -0.363 6.363 12 C -0.150 4.150 13 C -0.051 4.051 14 C -0.136 4.136 15 C -0.139 4.139 16 C -0.145 4.145 17 C -0.057 4.057 18 C -0.031 4.031 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.135 4.135 24 C -0.111 4.111 25 H 0.071 0.929 26 H 0.185 0.815 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.464 -16.870 3.733 17.285 hybrid contribution 0.866 1.061 0.301 1.402 sum 0.402 -15.809 4.035 16.321 Atomic orbital electron populations 1.70075 1.05946 1.26542 1.46862 1.25048 0.94683 0.99108 0.93835 0.86737 0.79722 0.83216 0.78697 1.20149 1.21203 1.20140 1.21661 0.93148 0.91510 1.54984 0.92603 1.19330 0.87660 0.88812 0.86234 0.92651 1.86599 1.38261 1.96261 1.15198 1.21592 0.98978 0.92624 1.01840 1.20116 0.96683 0.95745 0.92508 1.21156 0.99326 0.95692 0.97400 1.20962 0.99117 0.95826 0.97970 1.21013 1.01453 1.00170 0.91840 1.18705 0.99752 0.95332 0.91900 1.18888 0.97321 0.94284 0.92575 1.21350 0.99770 1.00064 0.91675 1.21097 0.98519 0.95452 0.98490 1.21155 0.99723 0.96460 0.97367 1.21042 1.00367 0.99928 0.92551 1.21228 0.98589 0.94917 0.98741 1.21054 0.97819 0.93538 0.98681 0.92922 0.81494 0.92017 0.91297 0.86189 0.86442 0.86536 0.85395 0.85994 0.86352 0.86211 0.85887 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.48 12.84 55.43 0.71 -24.77 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.58 -15.64 8.76 -34.44 -0.30 -15.94 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.24 5.95 2.81 -27.89 -0.08 5.87 16 10 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 11 O -0.56 -14.33 12.22 -35.23 -0.43 -14.76 16 12 C -0.11 -2.27 4.96 -27.88 -0.14 -2.41 16 13 C -0.05 -0.93 4.96 -104.67 -0.52 -1.45 16 14 C -0.12 -2.00 9.69 -39.52 -0.38 -2.38 16 15 C -0.12 -1.79 10.03 -39.63 -0.40 -2.19 16 16 C -0.13 -1.86 9.43 -39.25 -0.37 -2.23 16 17 C -0.06 -0.91 5.88 -104.90 -0.62 -1.52 16 18 C -0.03 -0.44 5.88 -104.90 -0.62 -1.06 16 19 C -0.11 -1.50 9.43 -39.25 -0.37 -1.87 16 20 C -0.12 -1.36 10.03 -39.63 -0.40 -1.76 16 21 C -0.13 -1.37 10.04 -39.52 -0.40 -1.77 16 22 C -0.12 -1.31 10.03 -39.63 -0.40 -1.70 16 23 C -0.12 -1.45 9.43 -39.25 -0.37 -1.82 16 24 C -0.09 -1.62 8.77 -39.26 -0.34 -1.96 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.34 7.69 9.04 45.56 0.41 8.10 16 27 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 28 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 29 H 0.12 1.90 8.06 -52.48 -0.42 1.47 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.12 1.39 6.21 -52.49 -0.33 1.07 16 32 H 0.13 1.66 6.21 -52.48 -0.33 1.34 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.31 6.21 -52.49 -0.33 0.98 16 37 H 0.12 1.99 6.21 -52.48 -0.33 1.66 16 LS Contribution 315.99 15.07 4.76 4.76 Total: -1.00 -31.31 315.99 -9.58 -40.89 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -3.81 Total: 9.90 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -5.79 Total: -32.06 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.71 Total: -24.77 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.43 Total: -14.76 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.31 -9.58 -40.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584611792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.066 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds