Wall clock time and date at job start Mon Mar 30 2020 07:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00649 * 2 1 4 4 H 1.48501 * 109.46973 * 240.00284 * 3 2 1 5 5 H 1.48498 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47179 * 120.00099 * 3 2 1 7 7 C 1.37879 * 119.99334 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00354 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47563 * 59.99371 * 9 7 2 11 11 O 1.42898 * 109.46970 * 299.99697 * 9 7 2 12 12 C 1.52999 * 109.47478 * 179.97438 * 9 7 2 13 13 C 1.50700 * 109.47243 * 184.99673 * 12 9 7 14 14 C 1.38347 * 119.93898 * 89.99993 * 13 12 9 15 15 C 1.38300 * 120.24565 * 179.97438 * 14 13 12 16 16 C 1.38039 * 120.11939 * 0.27954 * 15 14 13 17 17 C 1.39318 * 119.87463 * 359.42240 * 16 15 14 18 18 C 1.48394 * 120.11863 * 180.30151 * 17 16 15 19 19 C 1.39338 * 120.11853 * 180.02562 * 18 17 16 20 20 C 1.38021 * 119.87857 * 179.69851 * 19 18 17 21 21 C 1.38322 * 120.11609 * 0.59655 * 20 19 18 22 22 C 1.38327 * 120.24455 * 359.67730 * 21 20 19 23 23 C 1.38017 * 120.12244 * 0.02562 * 22 21 20 24 24 C 1.37990 * 119.94195 * 269.97437 * 13 12 9 25 25 H 0.97006 * 119.99690 * 359.97438 * 1 2 3 26 26 H 0.96708 * 114.00257 * 299.99864 * 11 9 7 27 27 H 1.08992 * 109.47250 * 64.99253 * 12 9 7 28 28 H 1.09005 * 109.46768 * 304.99970 * 12 9 7 29 29 H 1.08007 * 119.87499 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.93785 * 179.97438 * 15 14 13 31 31 H 1.07998 * 120.06334 * 179.72231 * 16 15 14 32 32 H 1.08004 * 120.06601 * 359.97438 * 19 18 17 33 33 H 1.07991 * 119.94616 * 180.31691 * 20 19 18 34 34 H 1.08007 * 119.88018 * 179.69807 * 21 20 19 35 35 H 1.08001 * 119.93587 * 179.97438 * 22 21 20 36 36 H 1.07995 * 120.05895 * 180.02562 * 23 22 21 37 37 H 1.08005 * 120.06111 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6244 -2.5571 -0.8896 11 8 0.4289 -2.5746 1.1670 12 6 2.2449 -3.6622 0.0005 13 6 1.4954 -4.9637 -0.1232 14 6 1.2314 -5.4922 -1.3742 15 6 0.5445 -6.6864 -1.4951 16 6 0.1134 -7.3549 -0.3669 17 6 0.3820 -6.8305 0.8955 18 6 -0.0730 -7.5480 2.1121 19 6 0.1951 -7.0232 3.3747 20 6 -0.2358 -7.6915 4.5028 21 6 -0.9220 -8.8864 4.3819 22 6 -1.1860 -9.4148 3.1311 23 6 -0.7650 -8.7518 1.9962 24 6 1.0741 -5.6265 1.0114 25 1 -0.4850 0.8401 0.0004 26 1 0.9207 -2.5291 1.9985 27 1 2.8112 -3.6561 0.9318 28 1 2.9291 -3.5554 -0.8413 29 1 1.5629 -4.9701 -2.2597 30 1 0.3407 -7.0943 -2.4742 31 1 -0.4268 -8.2852 -0.4626 32 1 0.7354 -6.0929 3.4704 33 1 -0.0330 -7.2831 5.4818 34 1 -1.2533 -9.4087 5.2674 35 1 -1.7218 -10.3483 3.0425 36 1 -0.9720 -9.1650 1.0201 37 1 1.2815 -5.2135 1.9876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584611792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:06 Heat of formation + Delta-G solvation = -31.403133 kcal Electronic energy + Delta-G solvation = -19093.321350 eV Core-core repulsion = 16184.846186 eV Total energy + Delta-G solvation = -2908.475164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82511 -39.37371 -37.69308 -34.30231 -34.05801 -32.98147 -31.84178 -30.22196 -29.44873 -26.99637 -24.48065 -24.09400 -22.90672 -22.07063 -21.05844 -19.07871 -18.27374 -16.85128 -16.67584 -16.60515 -16.51089 -16.18535 -15.53300 -15.04649 -14.88878 -14.77013 -14.50516 -14.16758 -14.14648 -13.74917 -13.36243 -12.98269 -12.92057 -12.78821 -12.53179 -12.32556 -12.16926 -12.03324 -11.71004 -11.50205 -11.15995 -10.70375 -10.59432 -10.23499 -9.83376 -9.48316 -8.87020 -8.13033 -6.40202 -0.18534 0.52182 0.56955 1.05499 1.40464 1.42165 1.50443 2.38882 2.75459 3.12191 3.19722 3.68771 3.82396 4.02123 4.07971 4.19169 4.20850 4.31560 4.40736 4.48842 4.51637 4.56617 4.63910 4.77280 4.84133 5.00869 5.03681 5.15926 5.20259 5.29059 5.41461 5.51251 5.59170 5.62626 5.63615 5.69553 5.85755 5.90889 6.06683 6.11487 6.17824 6.72101 7.32891 7.55057 8.90693 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.004238 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.542773 B = 6604.649166 C = 7325.946755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.025 3.975 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.589 4.589 8 H 0.062 0.938 9 C 0.239 3.761 10 H 0.016 0.984 11 O -0.576 6.576 12 C -0.096 4.096 13 C -0.076 4.076 14 C -0.137 4.137 15 C -0.117 4.117 16 C -0.127 4.127 17 C -0.061 4.061 18 C -0.060 4.060 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.111 4.111 25 H 0.261 0.739 26 H 0.353 0.647 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.119 0.881 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 -18.800 4.779 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.627 4.627 8 H 0.080 0.920 9 C 0.182 3.818 10 H 0.034 0.966 11 O -0.380 6.380 12 C -0.134 4.134 13 C -0.076 4.076 14 C -0.155 4.155 15 C -0.135 4.135 16 C -0.144 4.144 17 C -0.061 4.061 18 C -0.060 4.060 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.129 4.129 25 H 0.070 0.930 26 H 0.198 0.802 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.137 0.863 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.498 -18.744 4.311 19.240 hybrid contribution 0.818 1.503 0.195 1.722 sum 0.320 -17.242 4.507 17.824 Atomic orbital electron populations 1.70228 1.07775 1.27411 1.48431 1.25934 0.95457 1.02998 0.93339 0.85603 0.78346 0.78383 0.79196 1.19228 1.21098 1.19091 1.22092 0.93645 0.92669 1.54261 0.91968 1.19136 0.87593 0.90414 0.84700 0.96624 1.86530 1.39120 1.96424 1.15926 1.21267 0.97866 0.91977 1.02253 1.20038 0.98204 0.95534 0.93793 1.21341 1.00341 0.96952 0.96907 1.21324 0.97685 0.94740 0.99705 1.21428 1.00809 1.01077 0.91127 1.18998 0.98872 0.94773 0.93456 1.18985 0.99292 0.95624 0.92101 1.21470 1.00612 1.00358 0.92484 1.21386 0.98381 0.95924 0.98664 1.21584 0.98249 0.95805 0.98651 1.21449 0.99708 1.00763 0.91999 1.21488 0.98000 0.94159 1.00319 1.21128 0.98859 0.94619 0.98282 0.93027 0.80232 0.91347 0.91048 0.85897 0.83195 0.83367 0.86298 0.84162 0.83347 0.83113 0.84242 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.90 12.84 21.45 0.28 -54.63 16 2 C 0.03 1.41 5.40 84.66 0.46 1.87 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.59 -32.66 8.76 25.60 0.22 -32.44 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.24 12.49 2.81 29.85 0.08 12.57 16 10 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 11 O -0.58 -30.66 12.22 -148.98 -1.82 -32.48 16 12 C -0.10 -4.01 4.96 29.85 0.15 -3.86 16 13 C -0.08 -2.89 4.96 -19.90 -0.10 -2.99 16 14 C -0.14 -4.72 9.69 22.31 0.22 -4.50 16 15 C -0.12 -3.32 10.03 22.24 0.22 -3.10 16 16 C -0.13 -3.52 9.43 22.48 0.21 -3.31 16 17 C -0.06 -1.94 5.88 -20.04 -0.12 -2.05 16 18 C -0.06 -1.69 5.88 -20.04 -0.12 -1.81 16 19 C -0.13 -3.55 9.43 22.48 0.21 -3.34 16 20 C -0.13 -2.72 10.03 22.24 0.22 -2.49 16 21 C -0.13 -2.28 10.04 22.31 0.22 -2.05 16 22 C -0.12 -2.22 10.03 22.24 0.22 -2.00 16 23 C -0.12 -2.73 9.43 22.48 0.21 -2.52 16 24 C -0.11 -3.99 8.77 22.48 0.20 -3.79 16 25 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 26 H 0.35 16.55 9.04 -74.05 -0.67 15.88 16 27 H 0.07 2.69 8.08 -2.39 -0.02 2.67 16 28 H 0.07 2.86 8.08 -2.38 -0.02 2.84 16 29 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.15 3.08 6.21 -2.91 -0.02 3.06 16 32 H 0.12 3.27 6.21 -2.91 -0.02 3.25 16 33 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.14 2.53 6.21 -2.91 -0.02 2.51 16 37 H 0.12 4.15 6.21 -2.91 -0.02 4.13 16 Total: -1.00 -68.80 315.99 3.41 -65.39 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.41 Total: 31.92 kcal Atomic # 6 Polarization: -58.33 SS G_CDS: 2.52 Total: -55.80 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.28 Total: -54.63 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.82 Total: -32.48 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.80 3.41 -65.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584611792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.988 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds