Wall clock time and date at job start Mon Mar 30 2020 07:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.39373 * 119.49126 * 89.99830 * 13 12 11 15 15 C 1.36174 * 121.08452 * 180.02562 * 14 13 12 16 16 C 1.40366 * 119.51902 * 359.97438 * 15 14 13 17 17 C 1.40432 * 122.08666 * 180.02562 * 16 15 14 18 18 N 1.31244 * 119.88555 * 179.97438 * 17 16 15 19 19 C 1.32614 * 122.77638 * 359.97438 * 18 17 16 20 20 C 1.36168 * 121.87413 * 0.02562 * 19 18 17 21 21 C 1.40686 * 118.67020 * 359.95778 * 20 19 18 22 22 C 1.36222 * 119.48956 * 269.72898 * 13 12 11 23 23 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 24 24 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 25 25 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 26 26 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 27 27 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 28 28 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 29 29 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 30 30 H 1.07995 * 119.45776 * 359.97438 * 14 13 12 31 31 H 1.07996 * 120.24119 * 179.97438 * 15 14 13 32 32 H 1.07999 * 120.05716 * 359.95817 * 17 16 15 33 33 H 1.07999 * 119.06209 * 180.02562 * 19 18 17 34 34 H 1.08003 * 120.66554 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.25777 * 0.02562 * 22 13 12 36 36 H 1.09007 * 113.75652 * 270.36911 * 23 11 10 37 37 H 1.08993 * 113.76177 * 139.00817 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.1211 -2.2659 3.2037 14 6 5.4474 -1.5816 4.2138 15 6 6.1282 -0.9389 5.2026 16 6 7.5316 -0.9656 5.2061 17 6 8.2875 -0.3222 6.1995 18 7 9.5983 -0.3754 6.1610 19 6 10.2631 -1.0203 5.2119 20 6 9.6232 -1.6757 4.2044 21 6 8.2166 -1.6640 4.1778 22 6 7.4821 -2.3178 3.1781 23 6 4.1311 -2.6025 0.0450 24 1 -0.4849 0.8400 0.0004 25 1 3.9361 -0.5532 -0.7738 26 1 4.5830 0.0035 1.5245 27 1 3.4736 -1.2616 2.2133 28 1 4.3746 -3.2920 2.5323 29 1 5.8904 -3.8295 1.7696 30 1 4.3676 -1.5600 4.2118 31 1 5.5923 -0.4124 5.9784 32 1 7.7910 0.2159 6.9935 33 1 11.3427 -1.0258 5.2388 34 1 10.1842 -2.1944 3.4410 35 1 7.9915 -2.8549 2.3917 36 1 3.4728 -3.3581 0.4740 37 1 4.5821 -2.9150 -0.8968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:08 Heat of formation + Delta-G solvation = 86.488168 kcal Electronic energy + Delta-G solvation = -19304.020944 eV Core-core repulsion = 16432.950681 eV Total energy + Delta-G solvation = -2871.070263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87989 -39.17797 -37.31425 -33.20373 -32.88060 -32.02212 -29.88797 -28.97853 -26.10331 -25.30803 -23.99994 -23.25254 -22.34060 -21.22560 -18.72015 -17.82385 -17.21489 -16.94281 -16.56398 -15.29249 -15.09538 -14.74025 -14.51817 -14.25441 -13.98631 -13.66050 -13.56988 -13.13336 -12.70495 -12.56138 -12.15691 -12.00048 -11.80028 -11.37448 -11.08031 -11.00215 -10.42929 -10.28275 -10.03862 -9.97931 -9.69147 -9.56994 -9.20602 -8.87802 -8.61825 -8.13815 -8.08476 -6.14990 -4.15725 0.31396 0.85313 1.89056 2.99786 3.26178 3.35162 3.39192 4.01313 4.29231 4.38028 4.46576 4.61040 4.73780 4.75919 4.86905 5.04905 5.11959 5.16049 5.29532 5.42269 5.54843 5.66256 5.66952 5.81444 5.83824 6.02755 6.03520 6.07113 6.23333 6.35077 6.39133 6.42959 6.54401 6.59621 6.69397 6.80765 6.93697 7.30822 7.64601 7.73799 7.86394 8.43344 8.87618 9.47920 10.97505 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027512 B = 0.004466 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.485488 B = 6267.832893 C = 6710.084808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.515 4.515 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.005 4.005 11 N -0.484 5.484 12 C 0.052 3.948 13 C -0.041 4.041 14 C -0.103 4.103 15 C -0.092 4.092 16 C -0.115 4.115 17 C 0.145 3.855 18 N -0.496 5.496 19 C 0.067 3.933 20 C -0.153 4.153 21 C -0.023 4.023 22 C -0.102 4.102 23 C 0.012 3.988 24 H 0.264 0.736 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.770 -3.793 9.940 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.021 4.021 10 C -0.133 4.133 11 N -0.207 5.207 12 C -0.076 4.076 13 C -0.042 4.042 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.027 4.027 18 N -0.204 5.204 19 C -0.075 4.075 20 C -0.173 4.173 21 C -0.028 4.028 22 C -0.121 4.121 23 C -0.116 4.116 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.178 0.822 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.892 -3.151 10.313 20.041 hybrid contribution -0.935 0.209 -0.341 1.017 sum 15.957 -2.943 9.972 19.046 Atomic orbital electron populations 1.69911 1.06407 1.27134 1.50147 1.24995 0.94616 0.99198 0.93972 0.86945 0.80883 0.83460 0.78792 1.20290 1.21482 1.17894 1.20968 0.88356 0.94517 1.51446 0.90815 1.20740 0.96395 0.92392 0.92591 1.24512 0.92696 0.94950 1.01180 1.68720 1.34830 1.08190 1.08942 1.21681 0.98485 0.95889 0.91576 1.19724 0.93837 0.95933 0.94730 1.21011 1.00799 0.96558 0.93766 1.20939 0.92256 0.99021 0.99001 1.19026 0.94959 1.00659 0.97074 1.23166 0.89346 0.94315 0.95831 1.67398 1.10037 1.17705 1.25250 1.22101 1.00180 0.94543 0.90709 1.21894 0.93655 1.01385 1.00334 1.18180 0.93556 0.96387 0.94665 1.20798 0.93492 1.00101 0.97664 1.23909 0.92703 0.99099 0.95908 0.92576 0.92979 0.91440 0.91622 0.93036 0.90379 0.85308 0.84937 0.82197 0.83321 0.84654 0.85128 0.91799 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 20.86 27.08 -169.99 -4.60 16.26 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.25 -5.78 5.27 56.52 0.30 -5.48 16 7 C -0.52 -13.87 9.33 -34.44 -0.32 -14.19 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.00 -0.04 2.88 -90.84 -0.26 -0.30 16 10 C 0.00 -0.10 5.59 -2.57 -0.01 -0.11 16 11 N -0.48 -8.79 6.26 -239.48 -1.50 -10.29 16 12 C 0.05 0.78 4.95 -4.97 -0.02 0.75 16 13 C -0.04 -0.58 5.09 -104.92 -0.53 -1.11 16 14 C -0.10 -1.40 8.84 -39.90 -0.35 -1.75 16 15 C -0.09 -1.12 9.81 -39.52 -0.39 -1.50 16 16 C -0.11 -1.46 5.74 -106.86 -0.61 -2.07 16 17 C 0.14 1.68 11.05 -16.98 -0.19 1.49 16 18 N -0.50 -6.24 10.30 -13.15 -0.14 -6.38 16 19 C 0.07 0.75 11.07 -17.96 -0.20 0.55 16 20 C -0.15 -1.71 9.88 -39.40 -0.39 -2.09 16 21 C -0.02 -0.30 5.75 -106.81 -0.61 -0.91 16 22 C -0.10 -1.35 9.41 -39.56 -0.37 -1.72 16 23 C 0.01 0.23 7.53 -2.76 -0.02 0.21 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.05 1.21 7.20 -51.93 -0.37 0.84 16 26 H 0.07 1.42 6.82 -51.93 -0.35 1.07 16 27 H 0.07 1.34 7.00 -51.93 -0.36 0.98 16 28 H 0.05 0.78 7.63 -51.93 -0.40 0.39 16 29 H 0.08 1.04 8.07 -51.92 -0.42 0.63 16 30 H 0.13 1.71 7.39 -52.49 -0.39 1.32 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.06 1.21 7.74 -51.92 -0.40 0.81 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 306.12 15.07 4.61 4.61 Total: -1.00 -30.54 306.12 -10.14 -40.68 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.89 Total: 1.84 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -4.39 Total: -20.77 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.86 Total: -42.62 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.60 Total: 16.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.54 -10.14 -40.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.165 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds