Wall clock time and date at job start Mon Mar 30 2020 07:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29018 * 124.91598 * 2 1 4 4 C 1.31793 * 117.12397 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.74872 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47083 * 99.00363 * 5 4 3 7 7 C 1.46901 * 110.99985 * 163.66207 * 6 5 4 8 8 C 1.50707 * 109.47121 * 192.37129 * 7 6 5 9 9 H 1.07993 * 119.99597 * 5.05389 * 8 7 6 10 10 C 1.37872 * 119.99852 * 185.05520 * 8 7 6 11 11 N 1.31512 * 120.00007 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99789 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47098 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47283 * 120.00072 * 12 10 8 15 15 H 1.48502 * 109.46888 * 240.00126 * 12 10 8 16 16 C 1.46904 * 111.00022 * 287.61265 * 6 5 4 17 17 C 1.52999 * 109.47046 * 321.65498 * 16 6 5 18 18 C 1.52997 * 109.47035 * 81.65239 * 16 6 5 19 19 C 1.33629 * 114.49822 * 0.23245 * 4 3 2 20 20 C 1.50702 * 126.03847 * 179.76939 * 19 4 3 21 21 S 1.70978 * 124.91355 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47280 * 90.00208 * 1 2 3 23 23 H 1.09004 * 109.47044 * 210.00034 * 1 2 3 24 24 H 1.09001 * 109.46940 * 329.99861 * 1 2 3 25 25 H 1.09003 * 109.47147 * 339.00609 * 5 4 3 26 26 H 1.08998 * 109.47232 * 219.00606 * 5 4 3 27 27 H 1.09005 * 109.46531 * 312.36687 * 7 6 5 28 28 H 1.08994 * 109.47384 * 72.36796 * 7 6 5 29 29 H 0.97004 * 119.99855 * 179.97438 * 11 10 8 30 30 H 1.08999 * 109.47117 * 201.65690 * 16 6 5 31 31 H 1.08998 * 109.47596 * 66.89835 * 17 16 6 32 32 H 1.09007 * 109.46910 * 186.90107 * 17 16 6 33 33 H 1.09004 * 109.47158 * 306.89376 * 17 16 6 34 34 H 1.09000 * 109.47050 * 64.60799 * 18 16 6 35 35 H 1.09002 * 109.46957 * 184.60930 * 18 16 6 36 36 H 1.08998 * 109.47547 * 304.61051 * 18 16 6 37 37 H 1.08995 * 109.47035 * 89.99727 * 20 19 4 38 38 H 1.08997 * 109.47134 * 210.00083 * 20 19 4 39 39 H 1.09001 * 109.46770 * 330.00002 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 7 5.0133 2.2567 1.3679 7 6 6.2303 3.0794 1.3643 8 6 6.8637 3.0455 2.7314 9 1 6.4548 2.4068 3.5002 10 6 7.9651 3.8300 3.0005 11 7 8.4632 4.6075 2.0640 12 14 8.7505 3.7875 4.6948 13 1 8.0067 2.8384 5.5616 14 1 10.1632 3.3459 4.5746 15 1 8.7056 5.1449 5.2954 16 6 3.9672 2.8679 2.1986 17 6 3.1824 3.8830 1.3652 18 6 3.0174 1.7803 2.7046 19 6 3.9354 -0.4006 -0.0039 20 6 5.3574 -0.8995 -0.0094 21 16 2.4856 -1.4020 0.0006 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 4.0379 2.9240 -0.3689 26 1 5.3740 1.7811 -0.6463 27 1 6.9323 2.6864 0.6288 28 1 5.9733 4.1072 1.1083 29 1 9.2379 5.1597 2.2535 30 1 4.4267 3.3731 3.0481 31 1 2.6241 3.3610 0.5881 32 1 2.4892 4.4238 2.0096 33 1 3.8747 4.5875 0.9042 34 1 3.5593 1.1031 3.3647 35 1 2.1957 2.2417 3.2524 36 1 2.6206 1.2214 1.8571 37 1 5.7033 -1.0224 1.0169 38 1 5.4041 -1.8582 -0.5259 39 1 5.9933 -0.1786 -0.5233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685984500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:05 Heat of formation + Delta-G solvation = 51.043513 kcal Electronic energy + Delta-G solvation = -19212.640696 eV Core-core repulsion = 16475.477389 eV Total energy + Delta-G solvation = -2737.163307 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15814 -37.17400 -33.37599 -32.76022 -30.76887 -30.15063 -28.15838 -26.50523 -25.53076 -24.32936 -22.28082 -21.96870 -19.23396 -18.39530 -17.48074 -16.21436 -15.64346 -14.91670 -14.57367 -14.33399 -13.96164 -13.57398 -13.23133 -13.19318 -12.77651 -12.73283 -12.38191 -12.36356 -12.07195 -12.02862 -11.52683 -11.44831 -11.04642 -10.89487 -10.78579 -10.59925 -10.48862 -10.33855 -9.91616 -9.73544 -9.33714 -9.20409 -8.85252 -8.43132 -8.24789 -7.15088 -6.00903 -4.01587 0.96064 1.53620 1.93672 3.03224 3.31729 3.39409 3.44735 4.23209 4.45376 5.02166 5.17209 5.28359 5.33952 5.37194 5.38075 5.44744 5.78006 5.80569 5.81180 5.85095 5.96909 6.13556 6.16120 6.26826 6.28487 6.34395 6.46819 6.54156 6.58694 6.69562 6.96404 7.03725 7.33068 7.44613 7.86046 8.00092 8.13801 8.27378 8.58445 9.07633 9.62625 11.09597 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.005390 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.778517 B = 5193.196210 C = 5528.949175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.032 3.968 3 N -0.452 5.452 4 C 0.084 3.916 5 C 0.116 3.884 6 N -0.523 5.523 7 C 0.193 3.807 8 C -0.501 4.501 9 H 0.063 0.937 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.087 3.913 17 C -0.182 4.182 18 C -0.149 4.149 19 C -0.195 4.195 20 C -0.068 4.068 21 S 0.076 5.924 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.026 0.974 28 H -0.002 1.002 29 H 0.260 0.740 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 -10.420 -5.231 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.246 4.246 3 N -0.168 5.168 4 C -0.046 4.046 5 C -0.015 4.015 6 N -0.247 5.247 7 C 0.068 3.932 8 C -0.540 4.540 9 H 0.081 0.919 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.723 3.277 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.022 4.022 17 C -0.240 4.240 18 C -0.207 4.207 19 C -0.316 4.316 20 C -0.128 4.128 21 S 0.330 5.670 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.044 0.956 28 H 0.015 0.985 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.500 -11.299 -5.055 18.316 hybrid contribution 0.890 1.581 0.621 1.918 sum -12.610 -9.718 -4.433 16.526 Atomic orbital electron populations 1.20352 0.85721 1.03805 1.03334 1.26713 1.01229 0.90891 1.05800 1.66099 1.04888 1.31348 1.14463 1.20120 0.89394 0.94326 1.00720 1.20682 0.94289 0.93061 0.93475 1.62261 1.05575 1.49925 1.06975 1.19757 0.85197 0.90387 0.97862 1.21174 1.11982 1.23637 0.97222 0.91864 1.24970 0.97091 0.95413 0.97089 1.69968 1.23990 1.27038 1.32882 0.86486 0.79142 0.77702 0.84367 1.19693 1.21069 1.21174 1.21495 0.91119 0.92923 0.96687 1.22462 1.00463 0.99825 1.01282 1.22132 0.98067 0.99348 1.01135 1.25590 0.99722 0.95092 1.11189 1.20196 0.88616 1.00405 1.03554 1.83712 0.98917 1.13374 1.70963 0.90117 0.90569 0.89560 0.92831 0.90211 0.95632 0.98458 0.93050 0.89584 0.91111 0.93689 0.93134 0.93444 0.94262 0.91427 0.89857 0.92206 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.46 36.01 0.38 -0.29 16 2 C 0.03 0.42 6.97 -13.46 -0.09 0.33 16 3 N -0.45 -7.27 7.44 -8.06 -0.06 -7.33 16 4 C 0.08 1.42 4.23 -84.22 -0.36 1.07 16 5 C 0.12 2.18 4.53 -4.98 -0.02 2.15 16 6 N -0.52 -11.25 4.36 -229.52 -1.00 -12.25 16 7 C 0.19 4.93 4.65 -4.97 -0.02 4.91 16 8 C -0.50 -13.94 8.12 -34.44 -0.28 -14.22 16 9 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 12 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.09 1.78 2.70 -67.71 -0.18 1.60 16 17 C -0.18 -3.41 7.84 37.16 0.29 -3.12 16 18 C -0.15 -2.76 9.16 37.16 0.34 -2.42 16 19 C -0.20 -2.99 6.59 -35.92 -0.24 -3.22 16 20 C -0.07 -0.95 10.10 36.01 0.36 -0.59 16 21 S 0.08 0.96 23.18 -107.50 -2.49 -1.53 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 1.03 5.49 -51.93 -0.28 0.74 16 26 H 0.08 1.46 6.68 -51.93 -0.35 1.11 16 27 H 0.03 0.69 7.80 -51.93 -0.41 0.28 16 28 H 0.00 -0.07 7.25 -51.93 -0.38 -0.44 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.09 1.99 6.86 -51.93 -0.36 1.63 16 31 H 0.07 1.29 5.34 -51.93 -0.28 1.01 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 1.01 7.15 -51.93 -0.37 0.63 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.21 3.18 -51.93 -0.17 1.05 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.18 6.94 -51.93 -0.36 0.82 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -29.96 317.78 -8.83 -38.80 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.87 Total: -1.01 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.32 Total: -45.36 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.96 -8.83 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685984500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.842 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds