Wall clock time and date at job start Mon Mar 30 2020 07:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29018 * 124.91598 * 2 1 4 4 C 1.31793 * 117.12397 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.74872 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47083 * 99.00363 * 5 4 3 7 7 C 1.46901 * 110.99985 * 163.66207 * 6 5 4 8 8 C 1.50707 * 109.47121 * 192.37129 * 7 6 5 9 9 H 1.07993 * 119.99597 * 5.05389 * 8 7 6 10 10 C 1.37872 * 119.99852 * 185.05520 * 8 7 6 11 11 N 1.31512 * 120.00007 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99789 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47098 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47283 * 120.00072 * 12 10 8 15 15 H 1.48502 * 109.46888 * 240.00126 * 12 10 8 16 16 C 1.46904 * 111.00022 * 287.61265 * 6 5 4 17 17 C 1.52999 * 109.47046 * 321.65498 * 16 6 5 18 18 C 1.52997 * 109.47035 * 81.65239 * 16 6 5 19 19 C 1.33629 * 114.49822 * 0.23245 * 4 3 2 20 20 C 1.50702 * 126.03847 * 179.76939 * 19 4 3 21 21 S 1.70978 * 124.91355 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47280 * 90.00208 * 1 2 3 23 23 H 1.09004 * 109.47044 * 210.00034 * 1 2 3 24 24 H 1.09001 * 109.46940 * 329.99861 * 1 2 3 25 25 H 1.09003 * 109.47147 * 339.00609 * 5 4 3 26 26 H 1.08998 * 109.47232 * 219.00606 * 5 4 3 27 27 H 1.09005 * 109.46531 * 312.36687 * 7 6 5 28 28 H 1.08994 * 109.47384 * 72.36796 * 7 6 5 29 29 H 0.97004 * 119.99855 * 179.97438 * 11 10 8 30 30 H 1.08999 * 109.47117 * 201.65690 * 16 6 5 31 31 H 1.08998 * 109.47596 * 66.89835 * 17 16 6 32 32 H 1.09007 * 109.46910 * 186.90107 * 17 16 6 33 33 H 1.09004 * 109.47158 * 306.89376 * 17 16 6 34 34 H 1.09000 * 109.47050 * 64.60799 * 18 16 6 35 35 H 1.09002 * 109.46957 * 184.60930 * 18 16 6 36 36 H 1.08998 * 109.47547 * 304.61051 * 18 16 6 37 37 H 1.08995 * 109.47035 * 89.99727 * 20 19 4 38 38 H 1.08997 * 109.47134 * 210.00083 * 20 19 4 39 39 H 1.09001 * 109.46770 * 330.00002 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 7 5.0133 2.2567 1.3679 7 6 6.2303 3.0794 1.3643 8 6 6.8637 3.0455 2.7314 9 1 6.4548 2.4068 3.5002 10 6 7.9651 3.8300 3.0005 11 7 8.4632 4.6075 2.0640 12 14 8.7505 3.7875 4.6948 13 1 8.0067 2.8384 5.5616 14 1 10.1632 3.3459 4.5746 15 1 8.7056 5.1449 5.2954 16 6 3.9672 2.8679 2.1986 17 6 3.1824 3.8830 1.3652 18 6 3.0174 1.7803 2.7046 19 6 3.9354 -0.4006 -0.0039 20 6 5.3574 -0.8995 -0.0094 21 16 2.4856 -1.4020 0.0006 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 4.0379 2.9240 -0.3689 26 1 5.3740 1.7811 -0.6463 27 1 6.9323 2.6864 0.6288 28 1 5.9733 4.1072 1.1083 29 1 9.2379 5.1597 2.2535 30 1 4.4267 3.3731 3.0481 31 1 2.6241 3.3610 0.5881 32 1 2.4892 4.4238 2.0096 33 1 3.8747 4.5875 0.9042 34 1 3.5593 1.1031 3.3647 35 1 2.1957 2.2417 3.2524 36 1 2.6206 1.2214 1.8571 37 1 5.7033 -1.0224 1.0169 38 1 5.4041 -1.8582 -0.5259 39 1 5.9933 -0.1786 -0.5233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685984500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:04 Heat of formation + Delta-G solvation = 32.733410 kcal Electronic energy + Delta-G solvation = -19213.434682 eV Core-core repulsion = 16475.477389 eV Total energy + Delta-G solvation = -2737.957292 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40880 -38.77590 -34.93599 -34.45172 -32.44520 -31.14465 -29.84129 -28.04823 -27.20316 -25.63469 -23.96793 -23.41553 -20.78834 -19.59639 -18.70532 -18.32593 -17.27183 -16.36983 -16.29509 -15.68585 -15.51717 -14.95635 -14.54121 -14.21941 -14.15272 -14.09907 -14.02987 -13.58971 -13.46874 -13.30922 -12.99218 -12.84919 -12.76239 -12.60051 -12.41582 -12.28853 -12.13874 -11.90690 -11.67615 -11.43777 -11.24170 -10.61190 -10.45068 -9.95914 -9.41867 -8.93519 -8.18484 -6.27722 -0.13331 0.47881 0.83206 1.39852 1.40542 1.53916 1.81611 2.41129 3.12999 3.13791 3.50246 4.03717 4.11907 4.17341 4.24451 4.31903 4.46922 4.55975 4.61830 4.67980 4.74512 4.77707 4.80383 4.86403 5.01389 5.01573 5.05949 5.12470 5.18287 5.21730 5.22665 5.34046 5.51281 5.52073 5.70041 6.09178 6.38858 6.65030 6.87814 6.91412 7.41541 8.92008 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.005390 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.778517 B = 5193.196210 C = 5528.949175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.032 3.968 3 N -0.482 5.482 4 C 0.067 3.933 5 C 0.120 3.880 6 N -0.523 5.523 7 C 0.210 3.790 8 C -0.514 4.514 9 H 0.057 0.943 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.965 3.035 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.280 1.280 16 C 0.085 3.915 17 C -0.170 4.170 18 C -0.140 4.140 19 C -0.216 4.216 20 C -0.067 4.067 21 S 0.139 5.861 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.005 0.995 28 H -0.033 1.033 29 H 0.264 0.736 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.151 -12.244 -4.670 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.246 4.246 3 N -0.199 5.199 4 C -0.063 4.063 5 C -0.011 4.011 6 N -0.247 5.247 7 C 0.084 3.916 8 C -0.553 4.553 9 H 0.075 0.925 10 C -0.193 4.193 11 N -0.574 5.574 12 Si 0.790 3.210 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.206 1.206 16 C -0.024 4.024 17 C -0.228 4.228 18 C -0.197 4.197 19 C -0.338 4.338 20 C -0.126 4.126 21 S 0.394 5.606 22 H 0.118 0.882 23 H 0.119 0.881 24 H 0.105 0.895 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.023 0.977 28 H -0.015 1.015 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.373 -13.145 -4.499 20.721 hybrid contribution 1.371 2.076 0.377 2.516 sum -14.003 -11.069 -4.122 18.319 Atomic orbital electron populations 1.20575 0.82774 1.05056 1.04935 1.27481 1.02971 0.90719 1.03439 1.66063 1.04464 1.32848 1.16482 1.19745 0.89728 0.93969 1.02852 1.20572 0.94856 0.94032 0.91631 1.62207 1.04910 1.48642 1.08956 1.19384 0.86661 0.89134 0.96413 1.21396 1.12372 1.23630 0.97852 0.92475 1.25826 0.97550 0.94878 1.01075 1.70087 1.24547 1.27759 1.35017 0.85404 0.78252 0.77905 0.79479 1.19055 1.20249 1.20566 1.21488 0.91202 0.93984 0.95726 1.22334 1.00027 0.99055 1.01385 1.22049 0.97779 0.98475 1.01441 1.25818 1.01531 0.95655 1.10761 1.20178 0.88028 1.01438 1.02939 1.83467 0.96155 1.11437 1.69556 0.88222 0.88111 0.89489 0.93567 0.90653 0.97668 1.01526 0.92763 0.92731 0.90196 0.91919 0.95248 0.94535 0.92399 0.90342 0.91099 0.89445 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.46 71.24 0.75 -0.33 16 2 C 0.03 0.75 6.97 88.52 0.62 1.37 16 3 N -0.48 -14.74 7.44 -179.41 -1.33 -16.08 16 4 C 0.07 2.23 4.23 41.52 0.18 2.40 16 5 C 0.12 4.65 4.53 85.56 0.39 5.04 16 6 N -0.52 -23.37 4.36 -880.05 -3.84 -27.21 16 7 C 0.21 11.34 4.65 85.56 0.40 11.73 16 8 C -0.51 -29.52 8.12 25.60 0.21 -29.31 16 9 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 10 C 0.00 0.26 5.46 84.65 0.46 0.73 16 11 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 12 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 16 C 0.08 3.55 2.70 44.91 0.12 3.67 16 17 C -0.17 -6.43 7.84 71.98 0.56 -5.87 16 18 C -0.14 -5.06 9.16 71.98 0.66 -4.41 16 19 C -0.22 -6.38 6.59 24.64 0.16 -6.21 16 20 C -0.07 -1.83 10.10 71.24 0.72 -1.11 16 21 S 0.14 3.08 23.18 -56.49 -1.31 1.77 16 22 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.84 5.49 -2.39 -0.01 1.83 16 26 H 0.08 2.92 6.68 -2.39 -0.02 2.90 16 27 H 0.01 0.30 7.80 -2.38 -0.02 0.28 16 28 H -0.03 -1.95 7.25 -2.39 -0.02 -1.97 16 29 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.05 2.61 6.86 -2.39 -0.02 2.59 16 31 H 0.08 2.89 5.34 -2.39 -0.01 2.88 16 32 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.03 1.21 7.15 -2.38 -0.02 1.19 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.71 3.18 -2.39 -0.01 2.70 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.04 6.94 -2.39 -0.02 2.02 16 Total: -1.00 -65.76 317.78 2.09 -63.68 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.04 Total: 9.36 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 5.22 Total: -22.30 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -4.89 Total: -99.49 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.31 Total: 1.77 kcal Total: -65.76 2.09 -63.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685984500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.409 kcal (2) G-P(sol) polarization free energy of solvation -65.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds