Wall clock time and date at job start Mon Mar 30 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47541 * 2 1 4 4 H 1.09001 * 109.47005 * 305.62731 * 3 2 1 5 5 C 1.50695 * 109.47277 * 185.62558 * 3 2 1 6 6 H 1.07998 * 120.00094 * 239.99514 * 5 3 2 7 7 C 1.37883 * 119.99844 * 60.00097 * 5 3 2 8 8 N 1.31517 * 120.00003 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99811 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47440 * 59.99737 * 9 7 5 11 11 H 1.48498 * 109.47165 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47149 * 299.99526 * 9 7 5 13 13 N 1.46899 * 109.46926 * 65.62497 * 3 2 1 14 14 C 1.46904 * 110.99911 * 204.34900 * 13 3 2 15 15 H 1.08999 * 109.47118 * 326.48532 * 14 13 3 16 16 C 1.52999 * 109.47081 * 86.48450 * 14 13 3 17 17 C 1.50702 * 109.47106 * 206.48454 * 14 13 3 18 18 C 1.38234 * 119.60031 * 155.00155 * 17 14 13 19 19 C 1.38604 * 119.17270 * 180.02562 * 18 17 14 20 20 C 1.38783 * 118.41029 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.43100 * 179.97438 * 20 19 18 22 22 C 1.38310 * 119.13618 * 359.97438 * 20 19 18 23 23 N 1.31846 * 119.60398 * 334.72728 * 17 14 13 24 24 H 1.08989 * 109.47413 * 174.33916 * 1 2 3 25 25 H 1.09006 * 109.46715 * 294.33836 * 1 2 3 26 26 H 1.08999 * 109.46800 * 54.33457 * 1 2 3 27 27 H 1.08995 * 109.46929 * 239.99954 * 2 1 3 28 28 H 1.09003 * 109.47330 * 120.00024 * 2 1 3 29 29 H 0.97001 * 119.99893 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00220 * 328.29897 * 13 3 2 31 31 H 1.09001 * 109.47071 * 184.70656 * 16 14 13 32 32 H 1.09006 * 109.46954 * 304.69960 * 16 14 13 33 33 H 1.08998 * 109.47319 * 64.70247 * 16 14 13 34 34 H 1.07996 * 120.41631 * 0.02562 * 18 17 14 35 35 H 1.08001 * 120.79808 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.62330 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5969 1.9846 -0.8353 5 6 3.5406 1.4447 -0.1393 6 1 4.1539 1.8865 0.6321 7 6 4.1305 0.8828 -1.2517 8 7 3.3837 0.3445 -2.1909 9 14 5.9905 0.8862 -1.4246 10 1 6.5949 0.1481 -0.2866 11 1 6.3702 0.2262 -2.6995 12 1 6.4850 2.2864 -1.4251 13 7 1.6645 2.0947 1.2615 14 6 1.5991 3.5534 1.1009 15 1 2.3507 3.8736 0.3794 16 6 0.2091 3.9494 0.5990 17 6 1.8618 4.2172 2.4281 18 6 2.3593 5.5065 2.4601 19 6 2.5982 6.1083 3.6857 20 6 2.3258 5.3871 4.8397 21 17 2.6061 6.0895 6.4023 22 6 1.8281 4.1014 4.7286 23 7 1.6093 3.5632 3.5448 24 1 -0.3633 -1.0225 -0.1014 25 1 -0.3633 0.4236 0.9364 26 1 -0.3633 0.5992 -0.8349 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7988 -0.0512 -2.9733 30 1 0.7911 1.7299 1.6111 31 1 0.1862 5.0209 0.4001 32 1 -0.0147 3.4049 -0.3184 33 1 -0.5345 3.7046 1.3574 34 1 2.5594 6.0383 1.5417 35 1 2.9863 7.1146 3.7413 36 1 1.6129 3.5333 5.6215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695259978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:55 Heat of formation + Delta-G solvation = 20.057465 kcal Electronic energy + Delta-G solvation = -18237.984938 eV Core-core repulsion = 15361.601175 eV Total energy + Delta-G solvation = -2876.383764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16786 -37.00705 -36.41777 -33.64113 -32.31275 -31.67637 -30.12065 -28.35498 -26.09210 -24.08226 -23.53344 -22.64817 -20.53453 -19.54844 -16.99776 -16.47960 -16.14201 -15.73419 -14.81737 -14.45379 -14.04305 -13.91602 -13.55259 -13.18920 -12.80769 -12.66158 -12.46672 -12.32895 -11.74969 -11.63735 -11.47476 -11.20270 -11.04991 -10.85434 -10.71004 -10.61412 -9.93562 -9.77229 -9.72876 -9.59548 -9.19662 -9.07566 -8.62805 -8.33254 -7.15576 -5.95298 -3.99388 1.06907 1.29986 2.03330 3.34357 3.38844 3.42754 3.84050 4.45356 4.52008 4.70857 4.78757 5.00410 5.32247 5.38381 5.44720 5.64432 5.70640 5.77450 5.91492 5.97607 6.20195 6.20961 6.24374 6.33189 6.45971 6.48432 6.71399 6.88852 7.11796 7.21465 7.51926 7.81461 7.94530 8.12859 8.37180 8.43222 8.82034 9.08860 9.65772 11.09651 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.005018 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.720701 B = 5578.639305 C = 6314.235974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.493 4.493 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.667 5.667 14 C 0.133 3.867 15 H 0.102 0.898 16 C -0.173 4.173 17 C 0.168 3.832 18 C -0.163 4.163 19 C -0.068 4.068 20 C -0.106 4.106 21 Cl -0.072 7.072 22 C 0.114 3.886 23 N -0.439 5.439 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.041 0.959 29 H 0.259 0.741 30 H 0.326 0.674 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 10.313 9.903 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.297 5.297 14 C 0.021 3.979 15 H 0.120 0.880 16 C -0.232 4.232 17 C 0.029 3.971 18 C -0.183 4.183 19 C -0.094 4.094 20 C -0.135 4.135 21 Cl -0.043 7.043 22 C -0.044 4.044 23 N -0.147 5.147 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.553 9.406 10.039 14.491 hybrid contribution 0.663 1.033 -0.393 1.288 sum -3.891 10.439 9.646 14.736 Atomic orbital electron populations 1.21880 0.99616 0.99674 0.99545 1.21744 0.91217 1.00304 1.03047 1.19199 0.95297 0.90086 0.84287 0.97940 1.21183 0.91361 1.36602 1.04043 0.92292 1.24936 0.97910 0.95657 0.95889 1.69861 1.34687 1.39444 1.09589 0.86646 0.86013 0.78096 0.77119 1.20363 1.21469 1.20504 1.60556 1.36548 1.00176 1.32469 1.20413 0.96481 0.91259 0.89752 0.87999 1.22474 0.97628 1.01357 1.01753 1.21769 0.90533 0.89878 0.94906 1.21992 1.01542 0.96515 0.98271 1.21412 0.97103 1.00108 0.90826 1.22072 1.07619 0.96723 0.87119 1.98352 1.95083 1.84155 1.26761 1.22866 0.94396 0.90444 0.96726 1.67746 1.15082 1.34815 0.97094 0.94468 0.94493 0.93969 0.88314 0.94014 0.93063 0.85515 0.92829 0.91461 0.92834 0.84066 0.84298 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.64 37.16 0.36 -2.51 16 2 C -0.12 -2.90 5.37 -26.73 -0.14 -3.05 16 3 C 0.22 5.25 1.83 -68.87 -0.13 5.13 16 4 H 0.00 0.08 7.21 -51.93 -0.37 -0.30 16 5 C -0.49 -13.34 8.47 -34.44 -0.29 -13.64 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -25.04 11.29 55.43 0.63 -24.41 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.67 -13.89 5.59 -102.17 -0.57 -14.46 16 14 C 0.13 2.39 2.64 -68.86 -0.18 2.20 16 15 H 0.10 1.98 7.57 -51.93 -0.39 1.59 16 16 C -0.17 -2.62 9.14 37.16 0.34 -2.28 16 17 C 0.17 2.76 5.89 -82.59 -0.49 2.27 16 18 C -0.16 -2.21 9.76 -39.45 -0.39 -2.60 16 19 C -0.07 -0.83 9.98 -39.24 -0.39 -1.22 16 20 C -0.11 -1.36 6.34 -39.35 -0.25 -1.61 16 21 Cl -0.07 -0.79 28.99 -51.86 -1.50 -2.30 16 22 C 0.11 1.61 10.99 -17.51 -0.19 1.42 16 23 N -0.44 -7.38 9.74 -9.44 -0.09 -7.48 16 24 H 0.04 0.65 8.14 -51.94 -0.42 0.23 16 25 H 0.04 0.64 6.65 -51.93 -0.35 0.30 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 2.58 5.94 -51.93 -0.31 2.28 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.33 6.46 6.33 -39.29 -0.25 6.22 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.09 7.49 -51.93 -0.39 0.70 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -28.28 313.98 -8.66 -36.94 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.99 Total: 5.06 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -1.84 Total: -14.44 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.04 Total: -46.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.28 -8.66 -36.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695259978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.995 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds