Wall clock time and date at job start Mon Mar 30 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47541 * 2 1 4 4 H 1.09001 * 109.47005 * 305.62731 * 3 2 1 5 5 C 1.50695 * 109.47277 * 185.62558 * 3 2 1 6 6 H 1.07998 * 120.00094 * 239.99514 * 5 3 2 7 7 C 1.37883 * 119.99844 * 60.00097 * 5 3 2 8 8 N 1.31517 * 120.00003 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99811 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47440 * 59.99737 * 9 7 5 11 11 H 1.48498 * 109.47165 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47149 * 299.99526 * 9 7 5 13 13 N 1.46899 * 109.46926 * 65.62497 * 3 2 1 14 14 C 1.46904 * 110.99911 * 204.34900 * 13 3 2 15 15 H 1.08999 * 109.47118 * 326.48532 * 14 13 3 16 16 C 1.52999 * 109.47081 * 86.48450 * 14 13 3 17 17 C 1.50702 * 109.47106 * 206.48454 * 14 13 3 18 18 C 1.38234 * 119.60031 * 155.00155 * 17 14 13 19 19 C 1.38604 * 119.17270 * 180.02562 * 18 17 14 20 20 C 1.38783 * 118.41029 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.43100 * 179.97438 * 20 19 18 22 22 C 1.38310 * 119.13618 * 359.97438 * 20 19 18 23 23 N 1.31846 * 119.60398 * 334.72728 * 17 14 13 24 24 H 1.08989 * 109.47413 * 174.33916 * 1 2 3 25 25 H 1.09006 * 109.46715 * 294.33836 * 1 2 3 26 26 H 1.08999 * 109.46800 * 54.33457 * 1 2 3 27 27 H 1.08995 * 109.46929 * 239.99954 * 2 1 3 28 28 H 1.09003 * 109.47330 * 120.00024 * 2 1 3 29 29 H 0.97001 * 119.99893 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00220 * 328.29897 * 13 3 2 31 31 H 1.09001 * 109.47071 * 184.70656 * 16 14 13 32 32 H 1.09006 * 109.46954 * 304.69960 * 16 14 13 33 33 H 1.08998 * 109.47319 * 64.70247 * 16 14 13 34 34 H 1.07996 * 120.41631 * 0.02562 * 18 17 14 35 35 H 1.08001 * 120.79808 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.62330 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5969 1.9846 -0.8353 5 6 3.5406 1.4447 -0.1393 6 1 4.1539 1.8865 0.6321 7 6 4.1305 0.8828 -1.2517 8 7 3.3837 0.3445 -2.1909 9 14 5.9905 0.8862 -1.4246 10 1 6.5949 0.1481 -0.2866 11 1 6.3702 0.2262 -2.6995 12 1 6.4850 2.2864 -1.4251 13 7 1.6645 2.0947 1.2615 14 6 1.5991 3.5534 1.1009 15 1 2.3507 3.8736 0.3794 16 6 0.2091 3.9494 0.5990 17 6 1.8618 4.2172 2.4281 18 6 2.3593 5.5065 2.4601 19 6 2.5982 6.1083 3.6857 20 6 2.3258 5.3871 4.8397 21 17 2.6061 6.0895 6.4023 22 6 1.8281 4.1014 4.7286 23 7 1.6093 3.5632 3.5448 24 1 -0.3633 -1.0225 -0.1014 25 1 -0.3633 0.4236 0.9364 26 1 -0.3633 0.5992 -0.8349 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7988 -0.0512 -2.9733 30 1 0.7911 1.7299 1.6111 31 1 0.1862 5.0209 0.4001 32 1 -0.0147 3.4049 -0.3184 33 1 -0.5345 3.7046 1.3574 34 1 2.5594 6.0383 1.5417 35 1 2.9863 7.1146 3.7413 36 1 1.6129 3.5333 5.6215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695259978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:54 Heat of formation + Delta-G solvation = 3.586386 kcal Electronic energy + Delta-G solvation = -18238.699178 eV Core-core repulsion = 15361.601175 eV Total energy + Delta-G solvation = -2877.098003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.28644 -38.49314 -37.53277 -35.28926 -33.56731 -33.37678 -31.44254 -29.82260 -27.96509 -25.35353 -24.76333 -24.25159 -21.84198 -21.40365 -18.27760 -18.03831 -17.60548 -16.95638 -16.64551 -15.81326 -15.61959 -15.18955 -14.98327 -14.48527 -14.24145 -14.07638 -13.81855 -13.58417 -13.29712 -13.09774 -12.83929 -12.75285 -12.57649 -12.53961 -12.15337 -12.12155 -11.92248 -11.54200 -11.39511 -10.99551 -10.78649 -10.41404 -10.32489 -9.72189 -8.85711 -8.03047 -6.14599 -0.01841 0.27326 1.05253 1.41799 1.43608 1.50922 2.45518 2.72714 3.21381 3.38716 3.49414 3.81257 3.92334 4.16344 4.25594 4.33271 4.47979 4.54806 4.61491 4.71635 4.74361 4.77308 4.91924 5.01213 5.08305 5.15238 5.25852 5.29698 5.41867 5.58480 5.65403 5.79561 5.94116 6.41521 6.56638 6.98189 7.06085 7.11613 7.54553 8.99134 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.005018 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.720701 B = 5578.639305 C = 6314.235974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.228 3.772 4 H -0.021 1.021 5 C -0.509 4.509 6 H 0.043 0.957 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.133 3.867 15 H 0.079 0.921 16 C -0.161 4.161 17 C 0.143 3.857 18 C -0.162 4.162 19 C -0.061 4.061 20 C -0.103 4.103 21 Cl -0.053 7.053 22 C 0.103 3.897 23 N -0.470 5.470 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.331 0.669 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 11.788 11.071 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.120 3.880 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.061 0.939 7 C -0.184 4.184 8 N -0.557 5.557 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.302 5.302 14 C 0.021 3.979 15 H 0.097 0.903 16 C -0.221 4.221 17 C 0.005 3.995 18 C -0.182 4.182 19 C -0.087 4.087 20 C -0.132 4.132 21 Cl -0.024 7.024 22 C -0.055 4.055 23 N -0.179 5.179 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.150 0.850 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.178 0.822 35 H 0.188 0.812 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.534 10.897 11.219 16.284 hybrid contribution 0.665 0.639 -0.647 1.126 sum -3.868 11.536 10.572 16.119 Atomic orbital electron populations 1.21731 0.96297 1.00996 1.00446 1.21580 0.94206 0.99264 1.00880 1.18930 0.93663 0.90531 0.84910 1.00390 1.21407 0.92993 1.36570 1.03767 0.93898 1.25588 1.01745 0.95421 0.95675 1.69981 1.36055 1.39851 1.09841 0.85756 0.81427 0.78232 0.77023 1.20480 1.20848 1.19862 1.60434 1.37056 1.02122 1.30637 1.20356 0.97316 0.89413 0.90795 0.90334 1.22335 0.96029 1.02708 1.00983 1.21555 0.92764 0.91158 0.94021 1.22165 1.00690 0.95545 0.99839 1.21752 0.95902 1.01214 0.89881 1.22145 1.06448 0.96348 0.88254 1.98363 1.94869 1.83716 1.25470 1.23129 0.94633 0.91377 0.96385 1.67621 1.16280 1.36011 0.97954 0.92698 0.92683 0.94122 0.91364 0.95117 0.93102 0.84985 0.90361 0.92918 0.92190 0.82178 0.81186 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 9.64 71.98 0.69 -4.49 16 2 C -0.12 -5.74 5.37 30.60 0.16 -5.57 16 3 C 0.23 11.27 1.83 44.17 0.08 11.35 16 4 H -0.02 -1.15 7.21 -2.39 -0.02 -1.16 16 5 C -0.51 -28.26 8.47 25.60 0.22 -28.04 16 6 H 0.04 2.47 7.81 -2.91 -0.02 2.44 16 7 C 0.01 0.78 5.29 84.66 0.45 1.22 16 8 N -0.92 -52.28 11.29 21.45 0.24 -52.04 16 9 Si 0.95 44.28 29.54 68.60 2.03 46.30 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.67 -28.45 5.59 -477.15 -2.67 -31.11 16 14 C 0.13 4.80 2.64 44.17 0.12 4.91 16 15 H 0.08 3.15 7.57 -2.39 -0.02 3.14 16 16 C -0.16 -4.82 9.14 71.98 0.66 -4.16 16 17 C 0.14 4.61 5.89 42.56 0.25 4.86 16 18 C -0.16 -4.12 9.76 22.36 0.22 -3.90 16 19 C -0.06 -1.33 9.98 22.49 0.22 -1.10 16 20 C -0.10 -2.39 6.34 22.42 0.14 -2.24 16 21 Cl -0.05 -1.03 28.99 -2.72 -0.08 -1.10 16 22 C 0.10 2.77 10.99 84.70 0.93 3.70 16 23 N -0.47 -15.50 9.74 -183.79 -1.79 -17.29 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 1.86 6.65 -2.38 -0.02 1.85 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 3.67 5.94 -2.39 -0.01 3.66 16 28 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.33 13.18 6.33 -89.69 -0.57 12.61 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.71 7.49 -2.38 -0.02 1.69 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -61.48 313.98 2.39 -59.10 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.51 Total: 19.61 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 4.14 Total: -23.47 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.22 Total: -100.44 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.10 kcal Total: -61.48 2.39 -59.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695259978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.684 kcal (2) G-P(sol) polarization free energy of solvation -61.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds