Wall clock time and date at job start Mon Mar 30 2020 06:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.09000 * 109.47086 * 54.49312 * 3 2 1 5 5 C 1.50706 * 109.46923 * 174.48951 * 3 2 1 6 6 H 1.08005 * 119.99649 * 120.00128 * 5 3 2 7 7 C 1.37878 * 120.00092 * 300.00678 * 5 3 2 8 8 N 1.31513 * 119.99696 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99729 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47309 * 89.99538 * 9 7 5 11 11 H 1.48500 * 109.46886 * 209.99285 * 9 7 5 12 12 H 1.48491 * 109.47206 * 329.99279 * 9 7 5 13 13 N 1.46897 * 109.47117 * 294.48932 * 3 2 1 14 14 C 1.46906 * 110.99541 * 152.94672 * 13 3 2 15 15 H 1.08996 * 109.47458 * 33.59849 * 14 13 3 16 16 C 1.52998 * 109.47053 * 273.59487 * 14 13 3 17 17 C 1.50704 * 109.46889 * 153.59762 * 14 13 3 18 18 C 1.38234 * 119.60381 * 204.73011 * 17 14 13 19 19 C 1.38607 * 119.17291 * 179.75519 * 18 17 14 20 20 C 1.38778 * 118.41090 * 0.50442 * 19 18 17 21 21 Cl 1.73602 * 120.42988 * 179.70966 * 20 19 18 22 22 C 1.38305 * 119.13948 * 359.73607 * 20 19 18 23 23 N 1.31853 * 119.60276 * 24.99760 * 17 14 13 24 24 H 1.09001 * 109.47506 * 60.73541 * 1 2 3 25 25 H 1.09005 * 109.46688 * 300.73601 * 1 2 3 26 26 H 1.08994 * 109.47140 * 180.73907 * 1 2 3 27 27 H 1.08999 * 109.47206 * 120.00292 * 2 1 3 28 28 H 1.08996 * 109.46792 * 240.00045 * 2 1 3 29 29 H 0.97005 * 119.99504 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00249 * 28.99492 * 13 3 2 31 31 H 1.08999 * 109.47347 * 304.55050 * 16 14 13 32 32 H 1.09002 * 109.47359 * 64.55876 * 16 14 13 33 33 H 1.09000 * 109.46827 * 184.55405 * 16 14 13 34 34 H 1.08000 * 120.40701 * 359.97438 * 18 17 14 35 35 H 1.08005 * 120.78916 * 180.23638 * 19 18 17 36 36 H 1.07997 * 119.62877 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9840 0.8366 5 6 3.5409 1.4447 0.1364 6 1 4.1527 1.8870 -0.6360 7 6 4.1330 0.8819 1.2472 8 7 3.3879 0.3437 2.1878 9 14 5.9933 0.8853 1.4166 10 1 6.4241 2.1203 2.1197 11 1 6.4214 -0.3035 2.1968 12 1 6.6132 0.8417 0.0679 13 7 1.6620 2.0955 -1.2604 14 6 1.5343 3.5482 -1.0829 15 1 2.2595 3.8892 -0.3441 16 6 0.1207 3.8808 -0.6011 17 6 1.7928 4.2394 -2.3969 18 6 2.2324 5.5500 -2.4042 19 6 2.4722 6.1754 -3.6176 20 6 2.2496 5.4589 -4.7851 21 17 2.5258 6.1934 -6.3337 22 6 1.8044 4.1523 -4.6989 23 7 1.5918 3.5886 -3.5258 24 1 -0.3634 0.5024 -0.8965 25 1 -0.3633 0.5253 0.8834 26 1 -0.3633 -1.0275 0.0133 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8045 -0.0519 2.9695 30 1 0.8109 1.7004 -1.6313 31 1 -0.6076 3.4689 -1.2997 32 1 -0.0379 3.4478 0.3866 33 1 0.0006 4.9628 -0.5469 34 1 2.3904 6.0787 -1.4758 35 1 2.8199 7.1973 -3.6537 36 1 1.6290 3.5873 -5.6024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695259979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:58 Heat of formation + Delta-G solvation = 20.526536 kcal Electronic energy + Delta-G solvation = -18235.424673 eV Core-core repulsion = 15359.061250 eV Total energy + Delta-G solvation = -2876.363423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.17017 -37.01428 -36.42274 -33.64366 -32.31541 -31.67670 -30.11389 -28.36790 -26.09300 -24.07798 -23.53585 -22.65046 -20.54748 -19.55825 -17.00436 -16.47976 -16.14753 -15.73795 -14.81007 -14.45978 -14.03823 -13.91280 -13.56311 -13.18245 -12.81071 -12.66994 -12.46851 -12.33017 -11.74727 -11.65210 -11.47602 -11.20911 -11.05418 -10.84931 -10.73676 -10.59692 -9.93194 -9.77039 -9.72568 -9.60044 -9.19532 -9.08180 -8.63104 -8.33367 -7.15187 -5.95111 -3.98982 1.06595 1.29736 2.03140 3.32505 3.39671 3.45086 3.83784 4.45698 4.51857 4.70629 4.78555 5.00066 5.32361 5.38187 5.44226 5.63287 5.70229 5.76681 5.90113 5.97171 6.19801 6.20580 6.24046 6.32637 6.45155 6.47395 6.70698 6.87970 7.10906 7.20398 7.51093 7.81501 7.95183 8.12857 8.37200 8.44084 8.81563 9.09714 9.66269 11.09869 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.005004 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.788460 B = 5594.180810 C = 6336.131420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.133 3.867 15 H 0.102 0.898 16 C -0.172 4.172 17 C 0.167 3.833 18 C -0.163 4.163 19 C -0.068 4.068 20 C -0.106 4.106 21 Cl -0.072 7.072 22 C 0.114 3.886 23 N -0.439 5.439 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.041 0.959 29 H 0.259 0.741 30 H 0.326 0.674 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 10.374 -9.829 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.022 0.978 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.297 5.297 14 C 0.021 3.979 15 H 0.119 0.881 16 C -0.232 4.232 17 C 0.029 3.971 18 C -0.184 4.184 19 C -0.094 4.094 20 C -0.135 4.135 21 Cl -0.043 7.043 22 C -0.044 4.044 23 N -0.147 5.147 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.803 9.481 -9.977 14.577 hybrid contribution 0.605 1.017 0.418 1.255 sum -4.198 10.498 -9.558 14.805 Atomic orbital electron populations 1.21884 0.99612 0.99579 0.99642 1.21763 0.91220 1.00372 1.03070 1.19200 0.95311 0.90057 0.84341 0.97836 1.21235 0.91364 1.36342 1.04083 0.92216 1.24939 0.97922 0.95676 0.95914 1.69871 1.34606 1.39585 1.09571 0.86589 0.86043 0.77315 0.78002 1.20936 1.21380 1.19986 1.60569 1.38126 0.99574 1.31481 1.20419 0.96047 0.91441 0.90000 0.88061 1.22481 0.97427 1.01253 1.02024 1.21778 0.90593 0.89999 0.94747 1.21991 1.01714 0.96203 0.98445 1.21410 0.97018 1.00249 0.90766 1.22071 1.07945 0.96221 0.87288 1.98352 1.95104 1.82844 1.28045 1.22870 0.94460 0.90136 0.96965 1.67757 1.14172 1.35695 0.97080 0.94511 0.93943 0.94478 0.88285 0.94031 0.93137 0.85455 0.92714 0.91507 0.92901 0.84065 0.84294 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.74 37.16 0.36 -2.50 16 2 C -0.13 -2.92 5.35 -26.73 -0.14 -3.07 16 3 C 0.22 5.24 1.82 -68.86 -0.13 5.12 16 4 H 0.00 0.10 7.26 -51.93 -0.38 -0.27 16 5 C -0.49 -13.33 8.61 -34.44 -0.30 -13.62 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.07 11.29 55.43 0.63 -24.45 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.67 -13.88 5.60 -102.17 -0.57 -14.45 16 14 C 0.13 2.38 2.63 -68.86 -0.18 2.19 16 15 H 0.10 1.96 7.67 -51.93 -0.40 1.56 16 16 C -0.17 -2.61 9.15 37.16 0.34 -2.27 16 17 C 0.17 2.74 5.89 -82.58 -0.49 2.26 16 18 C -0.16 -2.21 9.76 -39.45 -0.39 -2.59 16 19 C -0.07 -0.83 9.98 -39.25 -0.39 -1.22 16 20 C -0.11 -1.35 6.34 -39.36 -0.25 -1.60 16 21 Cl -0.07 -0.79 28.99 -51.86 -1.50 -2.30 16 22 C 0.11 1.61 10.99 -17.51 -0.19 1.42 16 23 N -0.44 -7.38 9.73 -9.44 -0.09 -7.47 16 24 H 0.04 0.64 6.48 -51.93 -0.34 0.30 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.33 6.47 6.16 -39.29 -0.24 6.23 16 31 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 32 H 0.07 1.07 7.61 -51.93 -0.40 0.67 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 314.06 15.07 4.73 4.73 Total: -1.00 -28.37 314.06 -8.65 -37.03 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.98 Total: 4.98 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.84 Total: -14.45 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.04 Total: -46.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.37 -8.65 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695259979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.554 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds