Wall clock time and date at job start Mon Mar 30 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.09000 * 109.47086 * 54.49312 * 3 2 1 5 5 C 1.50706 * 109.46923 * 174.48951 * 3 2 1 6 6 H 1.08005 * 119.99649 * 120.00128 * 5 3 2 7 7 C 1.37878 * 120.00092 * 300.00678 * 5 3 2 8 8 N 1.31513 * 119.99696 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99729 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47309 * 89.99538 * 9 7 5 11 11 H 1.48500 * 109.46886 * 209.99285 * 9 7 5 12 12 H 1.48491 * 109.47206 * 329.99279 * 9 7 5 13 13 N 1.46897 * 109.47117 * 294.48932 * 3 2 1 14 14 C 1.46906 * 110.99541 * 152.94672 * 13 3 2 15 15 H 1.08996 * 109.47458 * 33.59849 * 14 13 3 16 16 C 1.52998 * 109.47053 * 273.59487 * 14 13 3 17 17 C 1.50704 * 109.46889 * 153.59762 * 14 13 3 18 18 C 1.38234 * 119.60381 * 204.73011 * 17 14 13 19 19 C 1.38607 * 119.17291 * 179.75519 * 18 17 14 20 20 C 1.38778 * 118.41090 * 0.50442 * 19 18 17 21 21 Cl 1.73602 * 120.42988 * 179.70966 * 20 19 18 22 22 C 1.38305 * 119.13948 * 359.73607 * 20 19 18 23 23 N 1.31853 * 119.60276 * 24.99760 * 17 14 13 24 24 H 1.09001 * 109.47506 * 60.73541 * 1 2 3 25 25 H 1.09005 * 109.46688 * 300.73601 * 1 2 3 26 26 H 1.08994 * 109.47140 * 180.73907 * 1 2 3 27 27 H 1.08999 * 109.47206 * 120.00292 * 2 1 3 28 28 H 1.08996 * 109.46792 * 240.00045 * 2 1 3 29 29 H 0.97005 * 119.99504 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00249 * 28.99492 * 13 3 2 31 31 H 1.08999 * 109.47347 * 304.55050 * 16 14 13 32 32 H 1.09002 * 109.47359 * 64.55876 * 16 14 13 33 33 H 1.09000 * 109.46827 * 184.55405 * 16 14 13 34 34 H 1.08000 * 120.40701 * 359.97438 * 18 17 14 35 35 H 1.08005 * 120.78916 * 180.23638 * 19 18 17 36 36 H 1.07997 * 119.62877 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9840 0.8366 5 6 3.5409 1.4447 0.1364 6 1 4.1527 1.8870 -0.6360 7 6 4.1330 0.8819 1.2472 8 7 3.3879 0.3437 2.1878 9 14 5.9933 0.8853 1.4166 10 1 6.4241 2.1203 2.1197 11 1 6.4214 -0.3035 2.1968 12 1 6.6132 0.8417 0.0679 13 7 1.6620 2.0955 -1.2604 14 6 1.5343 3.5482 -1.0829 15 1 2.2595 3.8892 -0.3441 16 6 0.1207 3.8808 -0.6011 17 6 1.7928 4.2394 -2.3969 18 6 2.2324 5.5500 -2.4042 19 6 2.4722 6.1754 -3.6176 20 6 2.2496 5.4589 -4.7851 21 17 2.5258 6.1934 -6.3337 22 6 1.8044 4.1523 -4.6989 23 7 1.5918 3.5886 -3.5258 24 1 -0.3634 0.5024 -0.8965 25 1 -0.3633 0.5253 0.8834 26 1 -0.3633 -1.0275 0.0133 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8045 -0.0519 2.9695 30 1 0.8109 1.7004 -1.6313 31 1 -0.6076 3.4689 -1.2997 32 1 -0.0379 3.4478 0.3866 33 1 0.0006 4.9628 -0.5469 34 1 2.3904 6.0787 -1.4758 35 1 2.8199 7.1973 -3.6537 36 1 1.6290 3.5873 -5.6024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695259979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:57 Heat of formation + Delta-G solvation = 3.973092 kcal Electronic energy + Delta-G solvation = -18236.142484 eV Core-core repulsion = 15359.061250 eV Total energy + Delta-G solvation = -2877.081234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28593 -38.50044 -37.53319 -35.29154 -33.56639 -33.37628 -31.43454 -29.83361 -27.96478 -25.34224 -24.76827 -24.25398 -21.84825 -21.41174 -18.29224 -18.03165 -17.60649 -16.96204 -16.64084 -15.80935 -15.61085 -15.18981 -14.98809 -14.49520 -14.23806 -14.07352 -13.81895 -13.57482 -13.30139 -13.10589 -12.84014 -12.74809 -12.57107 -12.54157 -12.16085 -12.13435 -11.92523 -11.53250 -11.39607 -11.00449 -10.78505 -10.41591 -10.32407 -9.72116 -8.85298 -8.03091 -6.14569 -0.01863 0.27405 1.05268 1.40449 1.42832 1.52784 2.45498 2.72745 3.21273 3.38884 3.49585 3.81306 3.92306 4.15972 4.25529 4.32512 4.47291 4.55293 4.61192 4.71700 4.73953 4.76959 4.91975 5.00877 5.08383 5.14661 5.25495 5.29326 5.41099 5.58402 5.65191 5.79624 5.94262 6.41479 6.57858 6.98382 7.06023 7.11533 7.54729 8.99127 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.005004 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.788460 B = 5594.180810 C = 6336.131420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.227 3.773 4 H -0.020 1.020 5 C -0.507 4.507 6 H 0.042 0.958 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.672 5.672 14 C 0.133 3.867 15 H 0.079 0.921 16 C -0.161 4.161 17 C 0.143 3.857 18 C -0.162 4.162 19 C -0.061 4.061 20 C -0.103 4.103 21 Cl -0.053 7.053 22 C 0.103 3.897 23 N -0.470 5.470 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.331 0.669 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 11.853 -10.941 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.119 3.881 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.061 0.939 7 C -0.185 4.185 8 N -0.558 5.558 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.303 5.303 14 C 0.021 3.979 15 H 0.097 0.903 16 C -0.220 4.220 17 C 0.005 3.995 18 C -0.182 4.182 19 C -0.087 4.087 20 C -0.132 4.132 21 Cl -0.024 7.024 22 C -0.055 4.055 23 N -0.179 5.179 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.179 0.821 35 H 0.188 0.812 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.852 10.975 -11.098 16.346 hybrid contribution 0.631 0.624 0.657 1.104 sum -4.222 11.599 -10.442 16.168 Atomic orbital electron populations 1.21734 0.96279 1.01048 1.00405 1.21597 0.94219 0.99305 1.00916 1.18929 0.93639 0.90528 0.84969 1.00258 1.21450 0.93027 1.36348 1.03783 0.93947 1.25587 1.01746 0.95435 0.95696 1.69988 1.35980 1.39969 1.09835 0.85695 0.81446 0.77585 0.77690 1.20110 1.20888 1.20272 1.60442 1.38696 1.01473 1.29689 1.20365 0.97016 0.89536 0.90972 0.90336 1.22343 0.95721 1.02884 1.01085 1.21570 0.92847 0.91239 0.93881 1.22167 1.00835 0.95199 1.00025 1.21753 0.95735 1.01434 0.89826 1.22143 1.06758 0.95877 0.88416 1.98363 1.94892 1.82378 1.26795 1.23129 0.94685 0.91084 0.96647 1.67631 1.15384 1.36933 0.97930 0.92756 0.94112 0.92621 0.91347 0.95099 0.93118 0.84934 0.92241 0.92835 0.90354 0.82124 0.81172 0.80870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.74 71.98 0.70 -4.46 16 2 C -0.12 -5.78 5.35 30.60 0.16 -5.61 16 3 C 0.23 11.25 1.82 44.17 0.08 11.33 16 4 H -0.02 -1.08 7.26 -2.39 -0.02 -1.09 16 5 C -0.51 -28.26 8.61 25.60 0.22 -28.04 16 6 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -52.32 11.29 21.45 0.24 -52.07 16 9 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.67 -28.46 5.60 -477.15 -2.67 -31.13 16 14 C 0.13 4.78 2.63 44.17 0.12 4.89 16 15 H 0.08 3.13 7.67 -2.39 -0.02 3.11 16 16 C -0.16 -4.78 9.15 71.98 0.66 -4.12 16 17 C 0.14 4.59 5.89 42.56 0.25 4.84 16 18 C -0.16 -4.09 9.76 22.36 0.22 -3.87 16 19 C -0.06 -1.32 9.98 22.49 0.22 -1.09 16 20 C -0.10 -2.38 6.34 22.41 0.14 -2.24 16 21 Cl -0.05 -1.03 28.99 -2.72 -0.08 -1.11 16 22 C 0.10 2.76 10.99 84.70 0.93 3.69 16 23 N -0.47 -15.51 9.73 -183.79 -1.79 -17.30 16 24 H 0.05 1.84 6.48 -2.39 -0.02 1.82 16 25 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 3.68 5.94 -2.39 -0.01 3.67 16 28 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 30 H 0.33 13.18 6.16 -89.69 -0.55 12.63 16 31 H 0.06 1.69 8.05 -2.39 -0.02 1.68 16 32 H 0.05 1.71 7.61 -2.39 -0.02 1.69 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.17 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -61.72 314.06 2.41 -59.31 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.52 Total: 19.38 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 4.15 Total: -23.50 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -4.22 Total: -100.50 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -61.72 2.41 -59.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695259979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.283 kcal (2) G-P(sol) polarization free energy of solvation -61.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds