Wall clock time and date at job start Mon Mar 30 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 H 1.09003 * 109.47249 * 56.33826 * 3 2 1 5 5 C 1.50706 * 109.47179 * 176.34361 * 3 2 1 6 6 H 1.07990 * 119.99792 * 120.00184 * 5 3 2 7 7 C 1.37875 * 119.99495 * 300.00007 * 5 3 2 8 8 N 1.31513 * 119.99722 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 120.00423 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47471 * 90.00201 * 9 7 5 11 11 H 1.48501 * 109.47320 * 210.00103 * 9 7 5 12 12 H 1.48504 * 109.47094 * 330.00123 * 9 7 5 13 13 N 1.46897 * 109.47084 * 296.34236 * 3 2 1 14 14 C 1.46903 * 111.00108 * 149.94670 * 13 3 2 15 15 H 1.09006 * 109.46898 * 326.33725 * 14 13 3 16 16 C 1.52995 * 109.47584 * 86.34395 * 14 13 3 17 17 C 1.50704 * 109.47067 * 206.34488 * 14 13 3 18 18 C 1.38232 * 119.60345 * 154.99425 * 17 14 13 19 19 C 1.38605 * 119.17549 * 179.97438 * 18 17 14 20 20 C 1.38776 * 118.41193 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 120.43349 * 179.97438 * 20 19 18 22 22 C 1.38306 * 119.13407 * 0.02562 * 20 19 18 23 23 N 1.31847 * 119.60499 * 334.72461 * 17 14 13 24 24 H 1.08996 * 109.47219 * 295.29651 * 1 2 3 25 25 H 1.09003 * 109.47273 * 55.29589 * 1 2 3 26 26 H 1.09000 * 109.47270 * 175.29103 * 1 2 3 27 27 H 1.08998 * 109.46711 * 119.99926 * 2 1 3 28 28 H 1.09000 * 109.47129 * 239.99812 * 2 1 3 29 29 H 0.97000 * 120.00461 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00405 * 273.89539 * 13 3 2 31 31 H 1.09007 * 109.46811 * 300.00011 * 16 14 13 32 32 H 1.08998 * 109.47347 * 59.99418 * 16 14 13 33 33 H 1.08997 * 109.47726 * 180.02562 * 16 14 13 34 34 H 1.08001 * 120.41271 * 0.02562 * 18 17 14 35 35 H 1.08008 * 120.79375 * 180.02562 * 19 18 17 36 36 H 1.08005 * 119.62659 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6240 1.9750 0.8554 5 6 3.5443 1.4435 0.0906 6 1 4.1322 1.8942 -0.6951 7 6 4.1698 0.8690 1.1768 8 7 5.4825 0.8703 1.2561 9 14 3.1527 0.0902 2.5362 10 1 2.9240 -1.3435 2.2240 11 1 3.8792 0.2060 3.8262 12 1 1.8464 0.7889 2.6393 13 7 1.6238 2.1090 -1.2411 14 6 1.4329 3.5497 -1.0266 15 1 1.0565 3.7201 -0.0179 16 6 2.7697 4.2730 -1.2012 17 6 0.4403 4.0797 -2.0291 18 6 -0.2852 5.2190 -1.7351 19 6 -1.1953 5.6989 -2.6638 20 6 -1.3431 5.0111 -3.8600 21 17 -2.4684 5.5655 -5.0599 22 6 -0.5828 3.8775 -4.0832 23 7 0.2781 3.4542 -3.1784 24 1 -0.3633 0.4391 0.9291 25 1 -0.3634 0.5851 -0.8449 26 1 -0.3634 -1.0242 -0.0844 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 5.9227 0.4665 2.0204 30 1 2.2863 1.9386 -1.9829 31 1 3.4876 3.8896 -0.4761 32 1 3.1460 4.1025 -2.2099 33 1 2.6282 5.3419 -1.0416 34 1 -0.1440 5.7292 -0.7937 35 1 -1.7756 6.5871 -2.4613 36 1 -0.6917 3.3358 -5.0112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695259981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:04 Heat of formation + Delta-G solvation = 25.701805 kcal Electronic energy + Delta-G solvation = -18303.037241 eV Core-core repulsion = 15426.898234 eV Total energy + Delta-G solvation = -2876.139007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26265 -37.11620 -36.52394 -33.72006 -32.40548 -31.94440 -30.43648 -28.32087 -26.54163 -24.02360 -23.56054 -22.42490 -20.73175 -19.85858 -17.17790 -16.78392 -16.51932 -15.75202 -15.16157 -14.47960 -14.08706 -13.93825 -13.43045 -13.15240 -12.94795 -12.70243 -12.58431 -12.33243 -12.06840 -11.70660 -11.50141 -11.46240 -11.19713 -10.90948 -10.75426 -10.54818 -10.31708 -9.84212 -9.75806 -9.45403 -9.31677 -9.14639 -8.71806 -8.57211 -7.34581 -6.13483 -4.14121 0.97408 1.20394 1.95701 3.25988 3.36330 3.38035 3.74807 4.36390 4.43297 4.59467 4.70221 4.89615 5.17871 5.29723 5.40414 5.61170 5.64934 5.84972 5.88074 5.95447 6.04975 6.10758 6.22654 6.34312 6.43281 6.55062 6.70410 6.75958 6.90172 7.02762 7.11885 7.30391 7.56014 7.94733 8.15703 8.40395 8.51650 8.90068 9.50258 10.98886 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.034962 B = 0.004483 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.688129 B = 6244.882206 C = 6590.562305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.183 3.817 4 H 0.029 0.971 5 C -0.543 4.543 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.300 1.300 12 H -0.265 1.265 13 N -0.662 5.662 14 C 0.137 3.863 15 H 0.089 0.911 16 C -0.174 4.174 17 C 0.163 3.837 18 C -0.164 4.164 19 C -0.068 4.068 20 C -0.106 4.106 21 Cl -0.070 7.070 22 C 0.115 3.885 23 N -0.439 5.439 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.264 0.736 30 H 0.345 0.655 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.380 9.049 -7.340 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C 0.074 3.926 4 H 0.047 0.953 5 C -0.582 4.582 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.228 1.228 12 H -0.190 1.190 13 N -0.291 5.291 14 C 0.025 3.975 15 H 0.107 0.893 16 C -0.234 4.234 17 C 0.025 3.975 18 C -0.185 4.185 19 C -0.094 4.094 20 C -0.135 4.135 21 Cl -0.042 7.042 22 C -0.043 4.043 23 N -0.147 5.147 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.164 0.836 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.489 8.127 -7.421 17.409 hybrid contribution -0.126 0.643 0.922 1.131 sum -13.615 8.770 -6.499 17.450 Atomic orbital electron populations 1.21733 0.97708 0.99483 1.01172 1.21798 0.93740 0.99355 1.00289 1.19659 0.94261 0.90721 0.87994 0.95269 1.21780 0.90242 1.38561 1.07608 0.90458 1.25001 0.94687 0.95292 0.97960 1.69911 1.08131 1.44874 1.30587 0.86840 0.80329 0.80035 0.80900 1.20526 1.22752 1.19049 1.60607 1.53218 1.05931 1.09335 1.20384 0.91937 0.90608 0.94595 0.89336 1.22552 0.98156 0.99299 1.03346 1.21840 0.93660 0.89810 0.92197 1.21978 0.97440 0.98156 1.00902 1.21417 0.97210 0.99199 0.91579 1.22083 0.98552 0.99721 0.93157 1.98357 1.60598 1.89285 1.55957 1.22891 0.90814 0.91890 0.98752 1.67773 1.16073 1.29423 1.01408 0.94572 0.91658 0.94933 0.93928 0.92306 0.92664 0.83617 0.88888 0.92874 0.93716 0.84114 0.84273 0.82328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.85 37.16 0.37 -2.31 16 2 C -0.11 -2.46 5.12 -26.73 -0.14 -2.59 16 3 C 0.18 4.06 1.60 -68.86 -0.11 3.95 16 4 H 0.03 0.68 6.38 -51.93 -0.33 0.35 16 5 C -0.54 -14.15 7.72 -34.44 -0.27 -14.42 16 6 H 0.08 2.17 7.19 -52.49 -0.38 1.79 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 8 N -0.90 -26.51 13.96 55.43 0.77 -25.73 16 9 Si 0.89 21.50 24.40 -169.99 -4.15 17.35 16 10 H -0.28 -6.67 6.84 56.52 0.39 -6.28 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.16 6.53 56.52 0.37 -5.79 16 13 N -0.66 -12.83 4.92 -102.16 -0.50 -13.33 16 14 C 0.14 2.31 2.84 -68.86 -0.20 2.11 16 15 H 0.09 1.48 7.32 -51.93 -0.38 1.10 16 16 C -0.17 -2.92 8.82 37.16 0.33 -2.59 16 17 C 0.16 2.47 5.89 -82.59 -0.49 1.98 16 18 C -0.16 -2.01 9.76 -39.45 -0.39 -2.40 16 19 C -0.07 -0.75 9.98 -39.25 -0.39 -1.14 16 20 C -0.11 -1.24 6.34 -39.36 -0.25 -1.49 16 21 Cl -0.07 -0.72 28.99 -51.86 -1.50 -2.22 16 22 C 0.12 1.50 10.99 -17.51 -0.19 1.31 16 23 N -0.44 -6.83 9.74 -9.44 -0.09 -6.93 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 1.21 7.58 -51.93 -0.39 0.82 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.98 3.22 -51.93 -0.17 0.81 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.35 7.04 8.01 -39.29 -0.31 6.73 16 31 H 0.09 1.84 6.26 -51.93 -0.33 1.52 16 32 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.16 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -28.28 305.99 -7.53 -35.81 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.85 Total: 6.11 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.82 Total: -15.66 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.18 Total: -45.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.15 Total: 17.35 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.28 -7.53 -35.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695259981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.510 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds