Wall clock time and date at job start Mon Mar 30 2020 07:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47488 * 2 1 4 4 O 1.42899 * 109.47498 * 120.00432 * 2 1 3 5 5 C 1.50702 * 109.47060 * 240.00539 * 2 1 3 6 6 C 1.38255 * 119.95845 * 264.72066 * 5 2 1 7 7 C 1.38128 * 120.08002 * 179.76410 * 6 5 2 8 8 C 1.38767 * 119.99642 * 0.53556 * 7 6 5 9 9 O 1.35900 * 120.04590 * 179.69792 * 8 7 6 10 10 C 1.42900 * 117.00203 * 185.47110 * 9 8 7 11 11 H 1.08998 * 109.47016 * 35.07739 * 10 9 8 12 12 C 1.53006 * 109.46941 * 275.08221 * 10 9 8 13 13 C 1.52996 * 109.47307 * 155.08205 * 10 9 8 14 14 C 1.50706 * 109.47073 * 294.99832 * 13 10 9 15 15 H 1.07998 * 119.99363 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99887 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99804 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00060 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47273 * 89.99742 * 18 16 14 20 20 H 1.48500 * 109.47461 * 209.99520 * 18 16 14 21 21 H 1.48496 * 109.47397 * 329.99823 * 18 16 14 22 22 C 1.38670 * 119.91246 * 359.72258 * 8 7 6 23 23 C 1.38377 * 119.92178 * 0.02562 * 22 8 7 24 24 F 1.35104 * 120.00242 * 180.02562 * 23 22 8 25 25 H 1.08998 * 109.47052 * 299.99436 * 1 2 3 26 26 H 1.09003 * 109.47305 * 59.99890 * 1 2 3 27 27 H 1.09002 * 109.47544 * 179.97438 * 1 2 3 28 28 H 0.96707 * 113.99487 * 59.99669 * 4 2 1 29 29 H 1.08001 * 119.95871 * 0.02562 * 6 5 2 30 30 H 1.08003 * 120.00315 * 180.25825 * 7 6 5 31 31 H 1.09000 * 109.46951 * 180.02562 * 12 10 9 32 32 H 1.09004 * 109.46921 * 300.00039 * 12 10 9 33 33 H 1.09002 * 109.47009 * 59.99763 * 12 10 9 34 34 H 1.09007 * 109.47099 * 54.99808 * 13 10 9 35 35 H 1.08999 * 109.47288 * 174.99642 * 13 10 9 36 36 H 0.97001 * 119.99780 * 180.02562 * 17 16 14 37 37 H 1.08008 * 120.03589 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0322 -0.7103 -1.2305 6 6 2.3663 -2.0503 -1.1662 7 6 2.8223 -2.7051 -2.2937 8 6 2.9562 -2.0150 -3.4902 9 8 3.4106 -2.6567 -4.5986 10 6 3.6377 -1.8594 -5.7626 11 1 4.0044 -0.8772 -5.4643 12 6 2.3269 -1.7010 -6.5359 13 6 4.6764 -2.5426 -6.6541 14 6 6.0014 -2.5882 -5.9375 15 1 6.0931 -2.1718 -4.9452 16 6 7.0961 -3.1623 -6.5482 17 7 8.2522 -3.2025 -5.9226 18 14 6.9371 -3.8830 -8.2642 19 1 7.2371 -2.8339 -9.2715 20 1 7.8952 -5.0069 -8.4199 21 1 5.5528 -4.3812 -8.4656 22 6 2.6262 -0.6696 -3.5532 23 6 2.1647 -0.0185 -2.4228 24 9 1.8422 1.2922 -2.4824 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7209 -1.5953 1.2327 29 1 2.2665 -2.5869 -0.2342 30 1 3.0789 -3.7529 -2.2431 31 1 2.5002 -1.0932 -7.4239 32 1 1.9601 -2.6832 -6.8341 33 1 1.5868 -1.2143 -5.9007 34 1 4.3502 -3.5580 -6.8796 35 1 4.7844 -1.9812 -7.5821 36 1 9.0225 -3.6061 -6.3524 37 1 2.7292 -0.1307 -4.4835 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695833745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:30 Heat of formation + Delta-G solvation = -142.407957 kcal Electronic energy + Delta-G solvation = -20370.713754 eV Core-core repulsion = 17026.655834 eV Total energy + Delta-G solvation = -3344.057919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.04805 -41.31028 -39.56167 -37.48556 -35.40052 -33.72856 -32.46350 -31.72639 -29.83316 -29.59585 -25.39629 -24.56816 -24.10400 -22.48295 -21.55791 -19.69944 -18.94748 -18.18814 -17.93939 -17.27632 -16.80717 -16.51737 -16.13037 -15.93728 -15.66162 -15.25392 -15.16415 -14.70070 -14.44887 -13.98794 -13.90316 -13.70334 -13.53724 -13.42779 -13.08303 -12.81296 -12.67601 -12.51043 -12.23530 -12.06671 -11.88132 -11.66557 -11.38808 -11.25225 -11.18646 -10.78418 -9.96957 -9.12590 -8.29165 -6.34011 0.08232 0.20828 1.36030 1.38956 1.50309 2.27586 2.35885 2.52971 3.06664 3.12439 3.43082 3.52284 3.70422 3.89219 4.02374 4.06195 4.13860 4.20839 4.32843 4.36420 4.50659 4.72257 4.77489 4.85729 4.91368 4.97157 5.01613 5.08750 5.17921 5.18470 5.23034 5.31112 5.34586 5.59501 5.71852 6.22659 6.50537 6.72171 6.77861 7.28988 8.88153 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030670 B = 0.004369 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.725879 B = 6407.048539 C = 6775.534900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.157 3.843 3 H 0.097 0.903 4 O -0.566 6.566 5 C -0.199 4.199 6 C -0.037 4.037 7 C -0.173 4.173 8 C 0.150 3.850 9 O -0.311 6.311 10 C 0.092 3.908 11 H 0.059 0.941 12 C -0.169 4.169 13 C -0.010 4.010 14 C -0.526 4.526 15 H 0.024 0.976 16 C 0.003 3.997 17 N -0.953 5.953 18 Si 0.953 3.047 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.243 1.243 22 C -0.258 4.258 23 C 0.133 3.867 24 F -0.138 7.138 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.390 0.610 29 H 0.175 0.825 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.052 0.948 36 H 0.266 0.734 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.495 3.746 7.771 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.097 3.903 3 H 0.115 0.885 4 O -0.375 6.375 5 C -0.200 4.200 6 C -0.055 4.055 7 C -0.191 4.191 8 C 0.103 3.897 9 O -0.224 6.224 10 C 0.037 3.963 11 H 0.077 0.923 12 C -0.226 4.226 13 C -0.047 4.047 14 C -0.564 4.564 15 H 0.042 0.958 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.775 3.225 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.166 1.166 22 C -0.278 4.278 23 C 0.113 3.887 24 F -0.117 7.117 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.241 0.759 29 H 0.192 0.808 30 H 0.162 0.838 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.029 4.114 7.817 20.077 hybrid contribution 0.507 -0.313 -1.012 1.174 sum -17.522 3.800 6.805 19.177 Atomic orbital electron populations 1.22411 0.93525 1.03819 1.03212 1.20525 0.94220 0.95156 0.80352 0.88527 1.86615 1.77631 1.30606 1.42598 1.20674 1.07823 0.96138 0.95382 1.20847 0.93965 0.92248 0.98399 1.20785 1.06061 1.02043 0.90240 1.19219 0.91646 0.90627 0.88207 1.86207 1.78903 1.37864 1.19460 1.22544 0.96343 0.93879 0.83567 0.92347 1.22355 0.95667 1.03518 1.01100 1.19698 0.92398 0.97360 0.95247 1.21285 0.94626 1.38364 1.02155 0.95797 1.26037 0.94507 0.95913 1.02862 1.70083 1.01907 1.46818 1.40513 0.85626 0.79407 0.78563 0.78860 1.18673 1.21181 1.16642 1.21303 1.10661 0.95450 1.00376 1.17217 0.99377 0.77882 0.94198 1.91462 1.90280 1.32909 1.97052 0.90303 0.91908 0.90711 0.75870 0.80789 0.83846 0.89231 0.91232 0.91488 0.95158 0.92990 0.92504 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.52 71.98 0.68 -1.90 16 2 C 0.16 3.11 3.60 29.85 0.11 3.22 16 3 H 0.10 2.11 7.79 -2.39 -0.02 2.09 16 4 O -0.57 -10.64 12.98 -148.98 -1.93 -12.57 16 5 C -0.20 -4.85 5.08 -19.80 -0.10 -4.95 16 6 C -0.04 -0.84 9.30 22.25 0.21 -0.64 16 7 C -0.17 -5.09 9.99 22.37 0.22 -4.86 16 8 C 0.15 5.30 6.60 22.50 0.15 5.45 16 9 O -0.31 -12.85 9.55 -92.42 -0.88 -13.73 16 10 C 0.09 3.60 2.17 30.59 0.07 3.67 16 11 H 0.06 2.35 6.31 -2.39 -0.02 2.34 16 12 C -0.17 -4.89 9.17 71.98 0.66 -4.23 16 13 C -0.01 -0.45 3.75 29.85 0.11 -0.34 16 14 C -0.53 -30.64 9.43 25.60 0.24 -30.40 16 15 H 0.02 1.57 7.99 -2.91 -0.02 1.54 16 16 C 0.00 0.19 5.47 84.65 0.46 0.66 16 17 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 18 Si 0.95 43.60 27.47 68.60 1.88 45.48 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 22 C -0.26 -8.41 8.22 22.41 0.18 -8.22 16 23 C 0.13 3.85 7.24 22.36 0.16 4.01 16 24 F -0.14 -3.90 16.56 44.97 0.74 -3.16 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.39 4.05 7.32 -74.05 -0.54 3.51 16 29 H 0.17 2.42 6.40 -2.91 -0.02 2.40 16 30 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.07 1.74 6.91 -2.39 -0.02 1.73 16 34 H 0.03 1.38 7.20 -2.38 -0.02 1.37 16 35 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 36 H 0.27 15.72 8.31 -92.71 -0.77 14.94 16 37 H 0.14 4.50 5.42 -2.91 -0.02 4.49 16 Total: -1.00 -71.34 310.78 3.76 -67.58 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.49 Total: 15.13 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.16 Total: -38.54 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.30 Total: -60.20 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -2.82 Total: -26.30 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.74 Total: -3.16 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -71.34 3.76 -67.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695833745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.823 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds