Wall clock time and date at job start Mon Mar 30 2020 07:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47087 * 2 1 4 4 O 1.42898 * 109.47138 * 120.00701 * 2 1 3 5 5 C 1.50700 * 109.46850 * 240.00259 * 2 1 3 6 6 C 1.38249 * 119.95778 * 264.72218 * 5 2 1 7 7 C 1.38140 * 120.08339 * 179.76759 * 6 5 2 8 8 C 1.38775 * 119.98811 * 0.51287 * 7 6 5 9 9 O 1.35898 * 120.04086 * 179.76623 * 8 7 6 10 10 C 1.42897 * 116.99887 * 174.60937 * 9 8 7 11 11 H 1.08999 * 109.47500 * 324.78319 * 10 9 8 12 12 C 1.52997 * 109.47133 * 84.78868 * 10 9 8 13 13 C 1.53002 * 109.46954 * 204.78405 * 10 9 8 14 14 C 1.50699 * 109.46969 * 64.99885 * 13 10 9 15 15 H 1.08001 * 120.00303 * 0.02562 * 14 13 10 16 16 C 1.37886 * 120.00121 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99609 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00049 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47481 * 89.99817 * 18 16 14 20 20 H 1.48499 * 109.46781 * 209.99919 * 18 16 14 21 21 H 1.48504 * 109.46823 * 329.99686 * 18 16 14 22 22 C 1.38668 * 119.91466 * 359.74577 * 8 7 6 23 23 C 1.38378 * 119.92107 * 359.97438 * 22 8 7 24 24 F 1.35104 * 119.99679 * 179.97438 * 23 22 8 25 25 H 1.09000 * 109.47254 * 299.99551 * 1 2 3 26 26 H 1.09001 * 109.47004 * 59.99945 * 1 2 3 27 27 H 1.09000 * 109.47561 * 179.97438 * 1 2 3 28 28 H 0.96703 * 114.00290 * 59.98875 * 4 2 1 29 29 H 1.08004 * 119.96003 * 0.02929 * 6 5 2 30 30 H 1.07994 * 120.00814 * 180.23476 * 7 6 5 31 31 H 1.09000 * 109.47561 * 179.97438 * 12 10 9 32 32 H 1.08999 * 109.46995 * 299.99945 * 12 10 9 33 33 H 1.08999 * 109.47376 * 59.99375 * 12 10 9 34 34 H 1.08996 * 109.47051 * 185.00063 * 13 10 9 35 35 H 1.09004 * 109.47437 * 305.00223 * 13 10 9 36 36 H 0.97002 * 119.99466 * 180.02562 * 17 16 14 37 37 H 1.08003 * 120.03558 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.0323 -0.7104 -1.2305 6 6 2.3662 -2.0504 -1.1661 7 6 2.8224 -2.7053 -2.2936 8 6 2.9558 -2.0152 -3.4902 9 8 3.4090 -2.6573 -4.5990 10 6 3.4093 -1.9182 -5.8220 11 1 2.5458 -1.2535 -5.8451 12 6 4.6927 -1.0907 -5.9174 13 6 3.3386 -2.8876 -7.0036 14 6 2.0192 -3.6154 -6.9780 15 1 1.3027 -3.4071 -6.1972 16 6 1.7264 -4.5465 -7.9519 17 7 2.5988 -4.7998 -8.9029 18 14 0.0907 -5.4481 -7.9205 19 1 -0.9123 -4.6814 -8.7023 20 1 0.2578 -6.7974 -8.5177 21 1 -0.3735 -5.5823 -6.5162 22 6 2.6259 -0.6699 -3.5532 23 6 2.1638 -0.0188 -2.4230 24 9 1.8424 1.2921 -2.4825 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7209 -1.5953 1.2328 29 1 2.2664 -2.5869 -0.2341 30 1 3.0793 -3.7530 -2.2429 31 1 4.6932 -0.5273 -6.8505 32 1 4.7431 -0.4002 -5.0755 33 1 5.5562 -1.7554 -5.8942 34 1 3.4283 -2.3307 -7.9363 35 1 4.1528 -3.6087 -6.9313 36 1 2.3927 -5.4546 -9.5882 37 1 2.7294 -0.1308 -4.4834 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695833747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:33 Heat of formation + Delta-G solvation = -125.730174 kcal Electronic energy + Delta-G solvation = -20372.760304 eV Core-core repulsion = 17029.425588 eV Total energy + Delta-G solvation = -3343.334716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.90594 -40.03459 -38.43130 -36.37835 -33.54819 -31.95484 -31.34663 -30.51087 -28.56534 -27.53276 -24.14374 -23.20180 -22.94351 -21.34628 -20.14471 -18.41945 -17.16260 -16.75724 -16.42836 -16.02678 -15.65443 -15.18872 -14.79546 -14.62565 -14.48228 -14.02314 -13.86708 -13.32064 -13.07374 -12.79036 -12.36025 -12.15470 -12.07514 -11.91368 -11.79265 -11.49405 -11.26698 -11.07393 -10.86358 -10.78287 -10.47994 -10.35166 -10.07726 -9.48207 -9.18295 -8.81223 -8.44404 -7.88781 -6.07292 -4.09218 1.23729 1.36614 3.28672 3.35239 3.39415 3.61431 3.73787 4.17551 4.30273 4.41253 4.50154 4.76938 4.97040 5.02105 5.17950 5.29808 5.31438 5.50621 5.53473 5.53909 5.66378 5.77349 5.86196 5.90672 6.06633 6.10058 6.13406 6.34480 6.39204 6.54526 6.65370 6.81329 7.38515 7.40536 7.49975 7.88656 7.96835 8.28572 8.94143 9.54559 11.04058 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022844 B = 0.004697 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.431500 B = 5960.241989 C = 6478.496899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.155 3.845 3 H 0.105 0.895 4 O -0.557 6.557 5 C -0.210 4.210 6 C -0.048 4.048 7 C -0.166 4.166 8 C 0.182 3.818 9 O -0.282 6.282 10 C 0.083 3.917 11 H 0.064 0.936 12 C -0.179 4.179 13 C 0.026 3.974 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.251 4.251 23 C 0.145 3.855 24 F -0.139 7.139 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.374 0.626 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.030 0.970 36 H 0.262 0.738 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 8.189 15.227 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.096 3.904 3 H 0.123 0.877 4 O -0.363 6.363 5 C -0.211 4.211 6 C -0.066 4.066 7 C -0.185 4.185 8 C 0.134 3.866 9 O -0.194 6.194 10 C 0.028 3.972 11 H 0.082 0.918 12 C -0.236 4.236 13 C -0.011 4.011 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.270 4.270 23 C 0.125 3.875 24 F -0.118 7.118 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.222 0.778 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.602 8.507 15.125 17.363 hybrid contribution -1.245 -0.619 -0.508 1.480 sum -1.847 7.888 14.617 16.712 Atomic orbital electron populations 1.22477 0.95457 1.02921 1.02869 1.20530 0.92916 0.95717 0.81259 0.87714 1.86608 1.77297 1.29179 1.43245 1.20280 1.09615 0.95918 0.95302 1.20415 0.95987 0.92387 0.97791 1.20507 1.06285 1.01166 0.90560 1.18974 0.89741 0.89489 0.88420 1.86330 1.76820 1.41086 1.15168 1.22977 0.96067 0.94902 0.83234 0.91786 1.22426 0.99324 1.00129 1.01736 1.19279 0.98497 0.93769 0.89555 1.21104 1.01465 1.22123 1.10808 0.92622 1.24976 0.97034 0.96821 0.95425 1.69947 1.34942 1.34288 1.14293 0.86575 0.83941 0.79148 0.78284 1.20647 1.21125 1.19822 1.21304 1.10479 0.95745 0.99488 1.17089 0.98808 0.77731 0.93839 1.91464 1.90315 1.32987 1.97034 0.91546 0.91339 0.91968 0.77822 0.84965 0.84428 0.91148 0.93266 0.91707 0.94208 0.95146 0.92866 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.52 37.16 0.35 -1.34 16 2 C 0.15 1.69 3.60 -27.88 -0.10 1.59 16 3 H 0.11 1.18 7.79 -51.93 -0.40 0.78 16 4 O -0.56 -5.82 12.98 -35.23 -0.46 -6.27 16 5 C -0.21 -2.70 5.08 -104.53 -0.53 -3.23 16 6 C -0.05 -0.58 9.30 -39.61 -0.37 -0.95 16 7 C -0.17 -2.46 9.99 -39.42 -0.39 -2.85 16 8 C 0.18 3.16 6.60 -39.22 -0.26 2.90 16 9 O -0.28 -5.75 9.55 -19.42 -0.19 -5.94 16 10 C 0.08 1.68 2.17 -26.73 -0.06 1.62 16 11 H 0.06 1.26 6.32 -51.93 -0.33 0.93 16 12 C -0.18 -2.95 9.17 37.16 0.34 -2.61 16 13 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 14 C -0.52 -14.31 8.88 -34.44 -0.31 -14.61 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.25 -4.03 8.21 -39.37 -0.32 -4.35 16 23 C 0.14 2.12 7.24 -39.44 -0.29 1.84 16 24 F -0.14 -1.99 16.56 2.25 0.04 -1.96 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.37 2.57 7.32 45.56 0.33 2.90 16 29 H 0.13 1.14 6.40 -52.48 -0.34 0.81 16 30 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.73 6.90 -51.93 -0.36 0.37 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.14 2.26 5.42 -52.48 -0.28 1.98 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -30.51 314.37 -6.61 -37.12 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.30 Total: 1.34 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.16 Total: -19.94 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.64 Total: -12.21 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.51 -6.61 -37.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695833747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.610 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds