Wall clock time and date at job start Mon Mar 30 2020 07:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47087 * 2 1 4 4 O 1.42898 * 109.47138 * 120.00701 * 2 1 3 5 5 C 1.50700 * 109.46850 * 240.00259 * 2 1 3 6 6 C 1.38249 * 119.95778 * 264.72218 * 5 2 1 7 7 C 1.38140 * 120.08339 * 179.76759 * 6 5 2 8 8 C 1.38775 * 119.98811 * 0.51287 * 7 6 5 9 9 O 1.35898 * 120.04086 * 179.76623 * 8 7 6 10 10 C 1.42897 * 116.99887 * 174.60937 * 9 8 7 11 11 H 1.08999 * 109.47500 * 324.78319 * 10 9 8 12 12 C 1.52997 * 109.47133 * 84.78868 * 10 9 8 13 13 C 1.53002 * 109.46954 * 204.78405 * 10 9 8 14 14 C 1.50699 * 109.46969 * 64.99885 * 13 10 9 15 15 H 1.08001 * 120.00303 * 0.02562 * 14 13 10 16 16 C 1.37886 * 120.00121 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99609 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00049 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47481 * 89.99817 * 18 16 14 20 20 H 1.48499 * 109.46781 * 209.99919 * 18 16 14 21 21 H 1.48504 * 109.46823 * 329.99686 * 18 16 14 22 22 C 1.38668 * 119.91466 * 359.74577 * 8 7 6 23 23 C 1.38378 * 119.92107 * 359.97438 * 22 8 7 24 24 F 1.35104 * 119.99679 * 179.97438 * 23 22 8 25 25 H 1.09000 * 109.47254 * 299.99551 * 1 2 3 26 26 H 1.09001 * 109.47004 * 59.99945 * 1 2 3 27 27 H 1.09000 * 109.47561 * 179.97438 * 1 2 3 28 28 H 0.96703 * 114.00290 * 59.98875 * 4 2 1 29 29 H 1.08004 * 119.96003 * 0.02929 * 6 5 2 30 30 H 1.07994 * 120.00814 * 180.23476 * 7 6 5 31 31 H 1.09000 * 109.47561 * 179.97438 * 12 10 9 32 32 H 1.08999 * 109.46995 * 299.99945 * 12 10 9 33 33 H 1.08999 * 109.47376 * 59.99375 * 12 10 9 34 34 H 1.08996 * 109.47051 * 185.00063 * 13 10 9 35 35 H 1.09004 * 109.47437 * 305.00223 * 13 10 9 36 36 H 0.97002 * 119.99466 * 180.02562 * 17 16 14 37 37 H 1.08003 * 120.03558 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.0323 -0.7104 -1.2305 6 6 2.3662 -2.0504 -1.1661 7 6 2.8224 -2.7053 -2.2936 8 6 2.9558 -2.0152 -3.4902 9 8 3.4090 -2.6573 -4.5990 10 6 3.4093 -1.9182 -5.8220 11 1 2.5458 -1.2535 -5.8451 12 6 4.6927 -1.0907 -5.9174 13 6 3.3386 -2.8876 -7.0036 14 6 2.0192 -3.6154 -6.9780 15 1 1.3027 -3.4071 -6.1972 16 6 1.7264 -4.5465 -7.9519 17 7 2.5988 -4.7998 -8.9029 18 14 0.0907 -5.4481 -7.9205 19 1 -0.9123 -4.6814 -8.7023 20 1 0.2578 -6.7974 -8.5177 21 1 -0.3735 -5.5823 -6.5162 22 6 2.6259 -0.6699 -3.5532 23 6 2.1638 -0.0188 -2.4230 24 9 1.8424 1.2921 -2.4825 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7209 -1.5953 1.2328 29 1 2.2664 -2.5869 -0.2341 30 1 3.0793 -3.7530 -2.2429 31 1 4.6932 -0.5273 -6.8505 32 1 4.7431 -0.4002 -5.0755 33 1 5.5562 -1.7554 -5.8942 34 1 3.4283 -2.3307 -7.9363 35 1 4.1528 -3.6087 -6.9313 36 1 2.3927 -5.4546 -9.5882 37 1 2.7294 -0.1308 -4.4834 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695833747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:33 Heat of formation + Delta-G solvation = -144.879594 kcal Electronic energy + Delta-G solvation = -20373.590685 eV Core-core repulsion = 17029.425588 eV Total energy + Delta-G solvation = -3344.165097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.03434 -41.29263 -39.54179 -37.46220 -35.44600 -33.56201 -32.42814 -31.67879 -29.58906 -29.38836 -25.51677 -24.78794 -24.09146 -22.51381 -21.58190 -19.65852 -18.56518 -18.15175 -17.91105 -17.24438 -16.80534 -16.62316 -16.10557 -15.96045 -15.66043 -15.26748 -15.11999 -14.52098 -14.40740 -13.87260 -13.82412 -13.51445 -13.48640 -13.35105 -13.08435 -12.85331 -12.66538 -12.62432 -12.38914 -12.14205 -11.97677 -11.68941 -11.36889 -11.23552 -11.05013 -10.60266 -9.95492 -9.11235 -8.22617 -6.31997 0.09729 0.22314 1.38328 1.39217 1.50427 2.30808 2.39220 2.53460 3.11586 3.13867 3.43773 3.53652 3.72257 3.91893 4.04952 4.08629 4.17883 4.20797 4.35398 4.36986 4.52620 4.71679 4.76380 4.86764 4.94322 5.00015 5.08378 5.14145 5.20719 5.24276 5.31865 5.36623 5.45129 5.73246 5.74986 6.15753 6.54284 6.77792 6.79434 7.35854 8.89092 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022844 B = 0.004697 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.431500 B = 5960.241989 C = 6478.496899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.159 3.841 3 H 0.101 0.899 4 O -0.564 6.564 5 C -0.199 4.199 6 C -0.036 4.036 7 C -0.171 4.171 8 C 0.149 3.851 9 O -0.310 6.310 10 C 0.092 3.908 11 H 0.064 0.936 12 C -0.169 4.169 13 C 0.029 3.971 14 C -0.533 4.533 15 H 0.051 0.949 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.268 1.268 22 C -0.259 4.259 23 C 0.133 3.867 24 F -0.139 7.139 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.390 0.610 29 H 0.175 0.825 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.025 0.975 35 H 0.002 0.998 36 H 0.265 0.735 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 8.373 17.517 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.100 3.900 3 H 0.118 0.882 4 O -0.372 6.372 5 C -0.200 4.200 6 C -0.054 4.054 7 C -0.190 4.190 8 C 0.102 3.898 9 O -0.224 6.224 10 C 0.037 3.963 11 H 0.082 0.918 12 C -0.226 4.226 13 C -0.008 4.008 14 C -0.571 4.571 15 H 0.070 0.930 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.193 1.193 22 C -0.278 4.278 23 C 0.114 3.886 24 F -0.118 7.118 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.241 0.759 29 H 0.193 0.807 30 H 0.163 0.837 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.020 0.980 36 H 0.074 0.926 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.828 8.698 17.434 19.569 hybrid contribution -0.867 -0.651 -1.098 1.543 sum -2.695 8.047 16.337 18.410 Atomic orbital electron populations 1.22441 0.94123 1.03649 1.03130 1.20492 0.93789 0.95309 0.80421 0.88152 1.86599 1.77483 1.30618 1.42539 1.20663 1.07767 0.96196 0.95388 1.20850 0.93920 0.92136 0.98465 1.20787 1.06104 1.01700 0.90423 1.19258 0.91905 0.90313 0.88279 1.86234 1.78158 1.42138 1.15822 1.22640 0.97930 0.93590 0.82153 0.91782 1.22324 0.97194 0.99901 1.03178 1.19118 0.96416 0.93867 0.91425 1.21442 1.02435 1.22572 1.10641 0.93030 1.25848 1.00714 0.97693 0.95020 1.70064 1.36915 1.35034 1.15017 0.85528 0.79558 0.77967 0.78524 1.19620 1.20524 1.19264 1.21297 1.11013 0.95484 1.00031 1.17215 0.99280 0.77920 0.94186 1.91463 1.90319 1.32909 1.97061 0.90193 0.92214 0.91038 0.75889 0.80742 0.83719 0.89973 0.91353 0.92052 0.95644 0.97974 0.92642 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 9.52 71.98 0.69 -2.10 16 2 C 0.16 3.00 3.60 29.85 0.11 3.11 16 3 H 0.10 2.02 7.79 -2.39 -0.02 2.00 16 4 O -0.56 -9.62 12.98 -148.98 -1.93 -11.56 16 5 C -0.20 -4.62 5.08 -19.81 -0.10 -4.72 16 6 C -0.04 -0.77 9.30 22.25 0.21 -0.57 16 7 C -0.17 -4.82 9.99 22.38 0.22 -4.60 16 8 C 0.15 5.16 6.60 22.50 0.15 5.31 16 9 O -0.31 -12.95 9.55 -92.40 -0.88 -13.83 16 10 C 0.09 3.82 2.17 30.59 0.07 3.88 16 11 H 0.06 2.60 6.32 -2.39 -0.02 2.58 16 12 C -0.17 -5.61 9.17 71.98 0.66 -4.95 16 13 C 0.03 1.49 4.68 29.85 0.14 1.62 16 14 C -0.53 -30.24 8.88 25.60 0.23 -30.01 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 16 C 0.01 0.30 5.46 84.66 0.46 0.77 16 17 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 18 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C -0.26 -8.25 8.21 22.41 0.18 -8.06 16 23 C 0.13 3.75 7.24 22.36 0.16 3.91 16 24 F -0.14 -3.82 16.56 44.97 0.74 -3.07 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.39 3.57 7.32 -74.06 -0.54 3.03 16 29 H 0.18 2.18 6.40 -2.91 -0.02 2.16 16 30 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.07 1.99 6.90 -2.39 -0.02 1.98 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.14 4.44 5.42 -2.91 -0.02 4.42 16 Total: -1.00 -66.54 314.37 3.95 -62.59 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.54 Total: 11.44 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 3.17 Total: -36.41 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.28 Total: -55.46 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -2.82 Total: -25.39 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.74 Total: -3.07 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.54 3.95 -62.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695833747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.294 kcal (2) G-P(sol) polarization free energy of solvation -66.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds