Wall clock time and date at job start Mon Mar 30 2020 07:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47070 * 2 1 4 4 O 1.42900 * 109.46923 * 119.99833 * 2 1 3 5 5 C 1.50704 * 109.47417 * 239.99451 * 2 1 3 6 6 C 1.38168 * 120.00218 * 265.02634 * 5 2 1 7 7 C 1.38216 * 120.07672 * 179.97438 * 6 5 2 8 8 C 1.38518 * 120.08690 * 0.02562 * 7 6 5 9 9 F 1.35098 * 120.00029 * 179.97438 * 8 7 6 10 10 C 1.38351 * 120.00201 * 359.67721 * 8 7 6 11 11 C 1.38710 * 119.91983 * 0.59872 * 10 8 7 12 12 O 1.35899 * 120.04554 * 179.70287 * 11 10 8 13 13 C 1.42898 * 116.99635 * 5.39894 * 12 11 10 14 14 H 1.09002 * 109.47229 * 35.20965 * 13 12 11 15 15 C 1.53001 * 109.47452 * 275.21297 * 13 12 11 16 16 C 1.52999 * 109.47241 * 155.20937 * 13 12 11 17 17 C 1.50706 * 109.47053 * 295.00228 * 16 13 12 18 18 H 1.08001 * 119.99665 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99621 * 179.72145 * 17 16 13 20 20 N 1.31514 * 119.99726 * 180.27583 * 19 17 16 21 21 Si 1.86794 * 120.00375 * 0.27534 * 19 17 16 22 22 H 1.48501 * 109.47232 * 89.99958 * 21 19 17 23 23 H 1.48504 * 109.47084 * 210.00022 * 21 19 17 24 24 H 1.48500 * 109.47262 * 329.99732 * 21 19 17 25 25 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47438 * 300.00580 * 1 2 3 27 27 H 1.09008 * 109.46796 * 60.00375 * 1 2 3 28 28 H 0.96696 * 114.00128 * 179.97438 * 4 2 1 29 29 H 1.07995 * 119.96678 * 359.95714 * 6 5 2 30 30 H 1.08004 * 119.95625 * 179.97438 * 7 6 5 31 31 H 1.07998 * 120.04014 * 180.31940 * 10 8 7 32 32 H 1.08998 * 109.46966 * 59.99781 * 15 13 12 33 33 H 1.08998 * 109.47360 * 180.02562 * 15 13 12 34 34 H 1.09002 * 109.46632 * 300.00033 * 15 13 12 35 35 H 1.08996 * 109.47455 * 174.99981 * 16 13 12 36 36 H 1.08998 * 109.46966 * 54.99699 * 16 13 12 37 37 H 0.97000 * 120.00273 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7105 -1.2304 6 6 2.3606 -2.0512 -1.1684 7 6 2.8210 -2.7045 -2.2960 8 6 2.9551 -2.0168 -3.4909 9 9 3.4058 -2.6569 -4.5919 10 6 2.6217 -0.6757 -3.5584 11 6 2.1651 -0.0185 -2.4254 12 8 1.8426 1.3003 -2.4874 13 6 1.8841 1.9184 -3.7751 14 1 1.5623 1.2031 -4.5320 15 6 3.3137 2.3721 -4.0773 16 6 0.9506 3.1305 -3.7893 17 6 -0.4735 2.6699 -3.6139 18 1 -0.6909 1.6178 -3.5029 19 6 -1.4982 3.5921 -3.5888 20 7 -2.7404 3.1905 -3.4302 21 14 -1.1220 5.4117 -3.7799 22 1 -1.1616 5.7769 -5.2188 23 1 -2.1342 6.2069 -3.0393 24 1 0.2288 5.6980 -3.2336 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 2.9702 -0.7122 1.2328 29 1 2.2575 -2.5894 -0.2378 30 1 3.0773 -3.7525 -2.2453 31 1 2.7212 -0.1402 -4.4909 32 1 3.9787 1.5085 -4.0672 33 1 3.3453 2.8440 -5.0593 34 1 3.6355 3.0873 -3.3203 35 1 1.0487 3.6536 -4.7405 36 1 1.2175 3.8041 -2.9750 37 1 -3.4613 3.8393 -3.4122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:03 Heat of formation + Delta-G solvation = -141.843135 kcal Electronic energy + Delta-G solvation = -20884.373542 eV Core-core repulsion = 17540.340116 eV Total energy + Delta-G solvation = -3344.033427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.98176 -41.46808 -39.12434 -37.52541 -35.42055 -33.77387 -32.69515 -31.30365 -29.86262 -29.71091 -25.19755 -24.76647 -23.94889 -22.19438 -21.54417 -19.58283 -18.91644 -18.53399 -17.78000 -17.13905 -16.77076 -16.60606 -16.42455 -15.95971 -15.53632 -15.22899 -14.99947 -14.61293 -14.11182 -13.96792 -13.91133 -13.71771 -13.44692 -13.32719 -13.08761 -12.82569 -12.65473 -12.52215 -12.31750 -12.06479 -11.90915 -11.66629 -11.42722 -11.25761 -11.00326 -10.76281 -9.86784 -9.15168 -8.26843 -6.30736 0.04249 0.29661 1.36169 1.39018 1.49671 2.26304 2.36664 2.54270 3.09197 3.16501 3.31494 3.68043 3.78619 3.92138 4.02016 4.09388 4.20971 4.25743 4.36512 4.39420 4.59554 4.78143 4.79518 4.87945 4.94738 5.00847 5.04224 5.10384 5.16523 5.20446 5.29943 5.30732 5.41447 5.61560 5.77592 6.25225 6.48815 6.74967 6.86280 7.31869 8.89954 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.006311 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.976045 B = 4435.422013 C = 5237.305590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.060 0.940 4 O -0.564 6.564 5 C -0.181 4.181 6 C -0.032 4.032 7 C -0.192 4.192 8 C 0.126 3.874 9 F -0.142 7.142 10 C -0.262 4.262 11 C 0.162 3.838 12 O -0.304 6.304 13 C 0.093 3.907 14 H 0.059 0.941 15 C -0.170 4.170 16 C -0.010 4.010 17 C -0.520 4.520 18 H 0.027 0.973 19 C 0.006 3.994 20 N -0.950 5.950 21 Si 0.947 3.053 22 H -0.264 1.264 23 H -0.288 1.288 24 H -0.244 1.244 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.394 0.606 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.142 0.858 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.029 0.971 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.014 -7.668 3.821 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.109 3.891 3 H 0.078 0.922 4 O -0.372 6.372 5 C -0.182 4.182 6 C -0.049 4.049 7 C -0.211 4.211 8 C 0.107 3.893 9 F -0.121 7.121 10 C -0.281 4.281 11 C 0.115 3.885 12 O -0.217 6.217 13 C 0.038 3.962 14 H 0.077 0.923 15 C -0.227 4.227 16 C -0.047 4.047 17 C -0.558 4.558 18 H 0.046 0.954 19 C -0.191 4.191 20 N -0.591 5.591 21 Si 0.770 3.230 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.167 1.167 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.244 0.756 29 H 0.187 0.813 30 H 0.181 0.819 31 H 0.160 0.840 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.172 -7.541 4.043 16.554 hybrid contribution 0.043 0.707 -0.944 1.180 sum 14.215 -6.834 3.099 16.074 Atomic orbital electron populations 1.21643 0.93473 1.02351 1.01922 1.20122 0.94214 0.93694 0.81117 0.92247 1.86462 1.28417 1.79844 1.42474 1.20217 1.07551 0.95634 0.94815 1.20910 0.93281 0.91491 0.99239 1.21273 1.06584 1.02233 0.90974 1.17590 0.97970 0.90032 0.83718 1.91475 1.86602 1.81641 1.52349 1.21311 1.11085 0.95527 1.00222 1.18882 0.92059 0.84039 0.93543 1.86199 1.82362 1.19504 1.33653 1.22533 0.96633 0.94889 0.82192 0.92294 1.22357 0.94302 1.02454 1.03595 1.19693 0.93011 0.93883 0.98103 1.21241 0.91535 0.93765 1.49274 0.95428 1.25962 0.94547 1.04261 0.94331 1.70073 1.00486 1.36356 1.52169 0.85713 0.79212 0.78966 0.79097 1.18875 1.21357 1.16728 0.91734 0.91536 0.93325 0.75650 0.81348 0.81903 0.84035 0.91502 0.89362 0.91273 0.93191 0.95253 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.55 71.98 0.69 -4.00 16 2 C 0.17 5.00 3.52 29.85 0.11 5.11 16 3 H 0.06 1.91 7.69 -2.39 -0.02 1.89 16 4 O -0.56 -13.39 12.17 -148.98 -1.81 -15.20 16 5 C -0.18 -5.38 5.05 -19.76 -0.10 -5.48 16 6 C -0.03 -0.74 9.33 22.25 0.21 -0.53 16 7 C -0.19 -4.45 10.02 22.33 0.22 -4.23 16 8 C 0.13 3.56 7.30 22.36 0.16 3.72 16 9 F -0.14 -3.97 17.27 44.97 0.78 -3.20 16 10 C -0.26 -8.31 8.21 22.41 0.18 -8.13 16 11 C 0.16 5.57 6.57 22.50 0.15 5.72 16 12 O -0.30 -12.02 8.69 -92.41 -0.80 -12.82 16 13 C 0.09 3.53 2.17 30.59 0.07 3.59 16 14 H 0.06 2.31 6.32 -2.39 -0.02 2.29 16 15 C -0.17 -4.79 9.17 71.98 0.66 -4.13 16 16 C -0.01 -0.44 3.75 29.85 0.11 -0.32 16 17 C -0.52 -29.50 9.43 25.60 0.24 -29.26 16 18 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 19 C 0.01 0.33 5.47 84.65 0.46 0.79 16 20 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 21 Si 0.95 43.22 27.47 68.60 1.88 45.11 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.39 5.87 9.05 -74.06 -0.67 5.19 16 29 H 0.17 3.03 7.35 -2.91 -0.02 3.01 16 30 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.14 4.39 5.42 -2.91 -0.02 4.37 16 32 H 0.07 1.70 6.89 -2.39 -0.02 1.68 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 36 H 0.03 1.32 7.19 -2.39 -0.02 1.30 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -67.77 312.40 3.86 -63.91 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.36 Total: 18.51 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 3.16 Total: -37.16 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.30 Total: -59.14 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -2.62 Total: -28.02 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.11 kcal Total: -67.77 3.86 -63.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.936 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds