Wall clock time and date at job start Mon Mar 30 2020 07:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46781 * 2 1 4 4 O 1.42897 * 109.46971 * 119.99832 * 2 1 3 5 5 C 1.50701 * 109.47174 * 239.99792 * 2 1 3 6 6 C 1.38174 * 120.00238 * 265.02417 * 5 2 1 7 7 C 1.38211 * 120.07648 * 179.97438 * 6 5 2 8 8 C 1.38513 * 120.08611 * 0.02562 * 7 6 5 9 9 F 1.35098 * 119.99435 * 180.02562 * 8 7 6 10 10 C 1.38341 * 120.00459 * 359.74245 * 8 7 6 11 11 C 1.38708 * 119.92200 * 0.51058 * 10 8 7 12 12 O 1.35895 * 120.04261 * 179.76861 * 11 10 8 13 13 C 1.42898 * 117.00425 * 354.51823 * 12 11 10 14 14 H 1.09001 * 109.46704 * 324.95130 * 13 12 11 15 15 C 1.53001 * 109.46995 * 84.94432 * 13 12 11 16 16 C 1.52997 * 109.47332 * 204.94522 * 13 12 11 17 17 C 1.50699 * 109.46867 * 65.00219 * 16 13 12 18 18 H 1.07996 * 120.00416 * 359.97438 * 17 16 13 19 19 C 1.37880 * 120.00218 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99526 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00413 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47280 * 60.00018 * 21 19 17 23 23 H 1.48507 * 109.47284 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47286 * 299.99839 * 21 19 17 25 25 H 1.08994 * 109.47505 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47369 * 300.00300 * 1 2 3 27 27 H 1.09002 * 109.47085 * 60.00125 * 1 2 3 28 28 H 0.96705 * 114.00118 * 60.00145 * 4 2 1 29 29 H 1.08002 * 119.95967 * 359.95335 * 6 5 2 30 30 H 1.07999 * 119.95271 * 179.97438 * 7 6 5 31 31 H 1.08006 * 120.03940 * 180.25878 * 10 8 7 32 32 H 1.09002 * 109.47034 * 60.00261 * 15 13 12 33 33 H 1.09001 * 109.47171 * 300.00468 * 15 13 12 34 34 H 1.08998 * 109.47008 * 180.02562 * 15 13 12 35 35 H 1.09000 * 109.47270 * 184.99537 * 16 13 12 36 36 H 1.08994 * 109.47585 * 305.00217 * 16 13 12 37 37 H 0.97003 * 120.00080 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7105 -1.2304 6 6 2.3605 -2.0512 -1.1685 7 6 2.8209 -2.7044 -2.2962 8 6 2.9549 -2.0166 -3.4909 9 9 3.4046 -2.6571 -4.5922 10 6 2.6228 -0.6753 -3.5580 11 6 2.1657 -0.0182 -2.4252 12 8 1.8433 1.3005 -2.4872 13 6 2.1122 1.9771 -3.7168 14 1 3.0241 1.5767 -4.1599 15 6 0.9424 1.7676 -4.6805 16 6 2.2898 3.4727 -3.4477 17 6 3.5155 3.6881 -2.5979 18 1 4.1083 2.8428 -2.2810 19 6 3.8803 4.9644 -2.2249 20 7 3.1587 5.9938 -2.6112 21 14 5.3991 5.2313 -1.1709 22 1 6.5936 4.7106 -1.8831 23 1 5.5716 6.6830 -0.9098 24 1 5.2394 4.5125 0.1188 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7209 -1.5952 1.2329 29 1 2.2575 -2.5893 -0.2378 30 1 3.0772 -3.7523 -2.2454 31 1 2.7231 -0.1395 -4.4904 32 1 0.0305 2.1679 -4.2375 33 1 0.8159 0.7021 -4.8722 34 1 1.1478 2.2834 -5.6186 35 1 2.4065 4.0008 -4.3941 36 1 1.4132 3.8544 -2.9244 37 1 3.4155 6.8917 -2.3491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:10 Heat of formation + Delta-G solvation = -125.720027 kcal Electronic energy + Delta-G solvation = -20822.577219 eV Core-core repulsion = 17479.242943 eV Total energy + Delta-G solvation = -3343.334276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.83472 -40.22063 -37.93477 -36.44078 -33.58026 -32.02534 -31.20855 -30.15851 -28.56757 -27.53637 -23.83254 -23.63469 -22.66155 -21.22199 -20.10577 -18.38973 -16.99413 -16.70985 -16.41214 -15.81810 -15.57116 -15.10686 -14.73302 -14.66183 -14.42750 -14.08531 -13.81836 -12.99991 -12.85797 -12.82555 -12.47186 -12.02315 -11.89974 -11.75615 -11.68970 -11.49939 -11.18325 -10.99837 -10.78136 -10.73563 -10.49584 -10.20351 -10.01219 -9.48104 -9.19266 -8.70905 -8.42479 -7.90703 -6.05916 -4.08013 1.19034 1.44182 3.33384 3.37152 3.41447 3.60815 3.70751 4.30328 4.43497 4.49394 4.74459 4.83385 5.04685 5.29195 5.31666 5.33951 5.38881 5.52633 5.55547 5.64907 5.80347 5.85447 5.96573 6.10248 6.11503 6.17347 6.25960 6.29305 6.50034 6.57226 6.64372 6.83423 7.40151 7.49382 7.68168 7.89915 7.94206 8.29219 8.95341 9.56178 11.05252 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.006344 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.952963 B = 4412.460371 C = 5000.410398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.152 3.848 3 H 0.122 0.878 4 O -0.557 6.557 5 C -0.168 4.168 6 C -0.050 4.050 7 C -0.204 4.204 8 C 0.135 3.865 9 F -0.142 7.142 10 C -0.251 4.251 11 C 0.189 3.811 12 O -0.281 6.281 13 C 0.084 3.916 14 H 0.064 0.936 15 C -0.178 4.178 16 C 0.027 3.973 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.366 0.634 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.030 0.970 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -15.514 0.942 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.093 3.907 3 H 0.140 0.860 4 O -0.362 6.362 5 C -0.169 4.169 6 C -0.068 4.068 7 C -0.223 4.223 8 C 0.116 3.884 9 F -0.120 7.120 10 C -0.270 4.270 11 C 0.140 3.860 12 O -0.192 6.192 13 C 0.028 3.972 14 H 0.082 0.918 15 C -0.236 4.236 16 C -0.010 4.010 17 C -0.556 4.556 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.213 0.787 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.747 -14.594 1.156 15.390 hybrid contribution 0.791 -0.478 -0.178 0.941 sum -3.957 -15.072 0.978 15.613 Atomic orbital electron populations 1.22414 0.95520 1.01924 1.03320 1.20666 0.92884 0.96703 0.80426 0.86041 1.86687 1.77293 1.28495 1.43739 1.19962 1.07565 0.94480 0.94899 1.20424 0.96078 0.92667 0.97659 1.20822 1.08512 1.00948 0.92018 1.17409 0.97663 0.90345 0.83009 1.91477 1.86652 1.81779 1.52125 1.21298 1.10559 0.94408 1.00754 1.18628 0.90602 0.84874 0.91883 1.86297 1.76760 1.16924 1.39253 1.22989 0.95906 0.96776 0.81495 0.91768 1.22423 1.00033 1.01000 1.00110 1.19266 0.98267 0.85277 0.98161 1.21066 1.09937 0.92480 1.32142 0.92641 1.24958 0.96960 0.96089 0.96133 1.69933 1.38982 0.98732 1.45828 0.86657 0.83292 0.77008 0.81140 1.20242 1.21227 1.20004 0.92820 0.91588 0.90910 0.78719 0.84942 0.85071 0.83807 0.91725 0.93294 0.91151 0.94231 0.95159 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.52 37.16 0.35 -1.83 16 2 C 0.15 2.24 3.55 -27.88 -0.10 2.14 16 3 H 0.12 2.18 7.69 -51.93 -0.40 1.78 16 4 O -0.56 -7.55 12.99 -35.23 -0.46 -8.01 16 5 C -0.17 -2.53 5.08 -104.46 -0.53 -3.06 16 6 C -0.05 -0.62 9.30 -39.61 -0.37 -0.99 16 7 C -0.20 -2.59 10.02 -39.49 -0.40 -2.99 16 8 C 0.14 2.00 7.30 -39.44 -0.29 1.71 16 9 F -0.14 -2.09 17.27 2.25 0.04 -2.05 16 10 C -0.25 -4.04 8.22 -39.37 -0.32 -4.36 16 11 C 0.19 3.25 6.57 -39.23 -0.26 2.99 16 12 O -0.28 -5.53 8.69 -19.41 -0.17 -5.70 16 13 C 0.08 1.65 2.17 -26.73 -0.06 1.59 16 14 H 0.06 1.26 6.31 -51.93 -0.33 0.93 16 15 C -0.18 -2.87 9.17 37.16 0.34 -2.53 16 16 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 17 C -0.52 -14.33 8.88 -34.44 -0.31 -14.63 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.37 3.25 7.32 45.56 0.33 3.59 16 29 H 0.13 1.18 6.40 -52.49 -0.34 0.84 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.14 2.26 5.43 -52.48 -0.28 1.98 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.70 6.91 -51.93 -0.36 0.34 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -30.36 314.17 -6.59 -36.96 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.30 Total: 2.69 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.16 Total: -19.82 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.63 Total: -13.70 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.36 -6.59 -36.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.762 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds