Wall clock time and date at job start Mon Mar 30 2020 07:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46781 * 2 1 4 4 O 1.42897 * 109.46971 * 119.99832 * 2 1 3 5 5 C 1.50701 * 109.47174 * 239.99792 * 2 1 3 6 6 C 1.38174 * 120.00238 * 265.02417 * 5 2 1 7 7 C 1.38211 * 120.07648 * 179.97438 * 6 5 2 8 8 C 1.38513 * 120.08611 * 0.02562 * 7 6 5 9 9 F 1.35098 * 119.99435 * 180.02562 * 8 7 6 10 10 C 1.38341 * 120.00459 * 359.74245 * 8 7 6 11 11 C 1.38708 * 119.92200 * 0.51058 * 10 8 7 12 12 O 1.35895 * 120.04261 * 179.76861 * 11 10 8 13 13 C 1.42898 * 117.00425 * 354.51823 * 12 11 10 14 14 H 1.09001 * 109.46704 * 324.95130 * 13 12 11 15 15 C 1.53001 * 109.46995 * 84.94432 * 13 12 11 16 16 C 1.52997 * 109.47332 * 204.94522 * 13 12 11 17 17 C 1.50699 * 109.46867 * 65.00219 * 16 13 12 18 18 H 1.07996 * 120.00416 * 359.97438 * 17 16 13 19 19 C 1.37880 * 120.00218 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99526 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00413 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47280 * 60.00018 * 21 19 17 23 23 H 1.48507 * 109.47284 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47286 * 299.99839 * 21 19 17 25 25 H 1.08994 * 109.47505 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47369 * 300.00300 * 1 2 3 27 27 H 1.09002 * 109.47085 * 60.00125 * 1 2 3 28 28 H 0.96705 * 114.00118 * 60.00145 * 4 2 1 29 29 H 1.08002 * 119.95967 * 359.95335 * 6 5 2 30 30 H 1.07999 * 119.95271 * 179.97438 * 7 6 5 31 31 H 1.08006 * 120.03940 * 180.25878 * 10 8 7 32 32 H 1.09002 * 109.47034 * 60.00261 * 15 13 12 33 33 H 1.09001 * 109.47171 * 300.00468 * 15 13 12 34 34 H 1.08998 * 109.47008 * 180.02562 * 15 13 12 35 35 H 1.09000 * 109.47270 * 184.99537 * 16 13 12 36 36 H 1.08994 * 109.47585 * 305.00217 * 16 13 12 37 37 H 0.97003 * 120.00080 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7105 -1.2304 6 6 2.3605 -2.0512 -1.1685 7 6 2.8209 -2.7044 -2.2962 8 6 2.9549 -2.0166 -3.4909 9 9 3.4046 -2.6571 -4.5922 10 6 2.6228 -0.6753 -3.5580 11 6 2.1657 -0.0182 -2.4252 12 8 1.8433 1.3005 -2.4872 13 6 2.1122 1.9771 -3.7168 14 1 3.0241 1.5767 -4.1599 15 6 0.9424 1.7676 -4.6805 16 6 2.2898 3.4727 -3.4477 17 6 3.5155 3.6881 -2.5979 18 1 4.1083 2.8428 -2.2810 19 6 3.8803 4.9644 -2.2249 20 7 3.1587 5.9938 -2.6112 21 14 5.3991 5.2313 -1.1709 22 1 6.5936 4.7106 -1.8831 23 1 5.5716 6.6830 -0.9098 24 1 5.2394 4.5125 0.1188 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7209 -1.5952 1.2329 29 1 2.2575 -2.5893 -0.2378 30 1 3.0772 -3.7523 -2.2454 31 1 2.7231 -0.1395 -4.4904 32 1 0.0305 2.1679 -4.2375 33 1 0.8159 0.7021 -4.8722 34 1 1.1478 2.2834 -5.6186 35 1 2.4065 4.0008 -4.3941 36 1 1.4132 3.8544 -2.9244 37 1 3.4155 6.8917 -2.3491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:10 Heat of formation + Delta-G solvation = -144.892497 kcal Electronic energy + Delta-G solvation = -20823.408600 eV Core-core repulsion = 17479.242943 eV Total energy + Delta-G solvation = -3344.165657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.96596 -41.47219 -39.20696 -37.57943 -35.48947 -33.63550 -32.49922 -31.30701 -29.67200 -29.39120 -25.41799 -24.91039 -24.10946 -22.40476 -21.58032 -19.64253 -18.56092 -18.09132 -17.94442 -17.05063 -16.73829 -16.61071 -16.20829 -15.97457 -15.73188 -15.25343 -15.21570 -14.42102 -14.07440 -14.04911 -13.81162 -13.65726 -13.44702 -13.33857 -12.89924 -12.80309 -12.67081 -12.64053 -12.35955 -12.17747 -11.89192 -11.77672 -11.40599 -11.14958 -11.09447 -10.60541 -9.85233 -9.12493 -8.23483 -6.32260 0.05963 0.30850 1.36594 1.39046 1.46767 2.29872 2.38023 2.53415 3.11201 3.17453 3.47038 3.65574 3.74882 3.94446 4.03530 4.13464 4.23196 4.26846 4.30840 4.39249 4.55699 4.76351 4.78721 4.90859 4.93928 5.05048 5.09387 5.15114 5.20575 5.25998 5.35684 5.40651 5.47574 5.73616 5.78722 6.15376 6.52141 6.78914 6.87240 7.35418 8.87852 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.006344 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.952963 B = 4412.460371 C = 5000.410398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.157 3.843 3 H 0.078 0.922 4 O -0.566 6.566 5 C -0.175 4.175 6 C -0.039 4.039 7 C -0.188 4.188 8 C 0.123 3.877 9 F -0.143 7.143 10 C -0.261 4.261 11 C 0.157 3.843 12 O -0.304 6.304 13 C 0.092 3.908 14 H 0.062 0.938 15 C -0.167 4.167 16 C 0.031 3.969 17 C -0.533 4.533 18 H 0.049 0.951 19 C 0.008 3.992 20 N -0.928 5.928 21 Si 0.953 3.047 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.273 1.273 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.389 0.611 29 H 0.176 0.824 30 H 0.166 0.834 31 H 0.139 0.861 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.025 0.975 36 H 0.003 0.997 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 -18.259 1.916 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.098 3.902 3 H 0.096 0.904 4 O -0.374 6.374 5 C -0.176 4.176 6 C -0.057 4.057 7 C -0.206 4.206 8 C 0.104 3.896 9 F -0.121 7.121 10 C -0.281 4.281 11 C 0.110 3.890 12 O -0.217 6.217 13 C 0.037 3.963 14 H 0.080 0.920 15 C -0.224 4.224 16 C -0.006 4.006 17 C -0.571 4.571 18 H 0.067 0.933 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.778 3.222 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.198 1.198 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.239 0.761 29 H 0.194 0.806 30 H 0.184 0.816 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.022 0.978 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.399 -17.372 2.125 18.046 hybrid contribution 0.688 0.259 -0.433 0.853 sum -3.711 -17.113 1.692 17.593 Atomic orbital electron populations 1.22334 0.93827 1.03604 1.02637 1.20363 0.94070 0.94847 0.80932 0.90440 1.86647 1.77526 1.30369 1.42888 1.20195 1.07639 0.95703 0.94047 1.20894 0.94067 0.91403 0.99310 1.21250 1.06208 1.02375 0.90803 1.17590 0.98116 0.90014 0.83889 1.91475 1.86695 1.81594 1.52377 1.21307 1.11128 0.95315 1.00320 1.18901 0.92791 0.83931 0.93367 1.86220 1.77740 1.18781 1.38993 1.22637 0.97510 0.93697 0.82468 0.92032 1.22311 0.98248 1.02470 0.99420 1.19093 0.96046 0.88953 0.96519 1.21402 1.10826 0.92429 1.32420 0.93292 1.25783 0.99938 0.95908 0.97395 1.70041 1.40609 0.99127 1.47034 0.85675 0.79887 0.77252 0.79355 1.19286 1.20322 1.19846 0.89887 0.91279 0.92598 0.76073 0.80637 0.81633 0.84309 0.91932 0.91271 0.90097 0.95653 0.97849 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 9.52 71.98 0.69 -3.29 16 2 C 0.16 4.54 3.55 29.85 0.11 4.64 16 3 H 0.08 2.92 7.69 -2.39 -0.02 2.90 16 4 O -0.57 -14.01 12.99 -148.98 -1.94 -15.94 16 5 C -0.17 -5.02 5.08 -19.76 -0.10 -5.12 16 6 C -0.04 -0.82 9.30 22.25 0.21 -0.61 16 7 C -0.19 -4.03 10.02 22.33 0.22 -3.80 16 8 C 0.12 3.38 7.30 22.36 0.16 3.54 16 9 F -0.14 -3.92 17.27 44.97 0.78 -3.14 16 10 C -0.26 -8.28 8.22 22.41 0.18 -8.09 16 11 C 0.16 5.42 6.57 22.50 0.15 5.57 16 12 O -0.30 -12.47 8.69 -92.37 -0.80 -13.27 16 13 C 0.09 3.79 2.17 30.59 0.07 3.86 16 14 H 0.06 2.51 6.31 -2.39 -0.02 2.49 16 15 C -0.17 -5.44 9.17 71.98 0.66 -4.78 16 16 C 0.03 1.59 4.68 29.85 0.14 1.73 16 17 C -0.53 -30.53 8.88 25.60 0.23 -30.30 16 18 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 19 C 0.01 0.47 5.46 84.66 0.46 0.93 16 20 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 21 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.39 5.30 7.32 -74.05 -0.54 4.76 16 29 H 0.18 2.09 6.40 -2.91 -0.02 2.07 16 30 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 31 H 0.14 4.40 5.43 -2.91 -0.02 4.38 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.96 6.91 -2.39 -0.02 1.94 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -67.74 314.17 4.06 -63.68 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.54 Total: 12.79 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.17 Total: -35.73 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -2.74 Total: -29.22 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.74 4.06 -63.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.214 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds