Wall clock time and date at job start Mon Mar 30 2020 06:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86791 * 120.00312 * 2 1 4 4 H 1.48499 * 109.47360 * 271.38664 * 3 2 1 5 5 H 1.48502 * 109.47393 * 31.38482 * 3 2 1 6 6 H 1.48498 * 109.47283 * 151.38714 * 3 2 1 7 7 C 1.39888 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00158 * 341.23621 * 7 2 1 9 9 C 1.41026 * 119.99870 * 161.24064 * 7 2 1 10 10 C 1.40664 * 120.26713 * 330.26248 * 9 7 2 11 11 C 1.38007 * 119.77364 * 180.02562 * 10 9 7 12 12 N 1.39853 * 119.84353 * 179.97438 * 11 10 9 13 13 C 1.46500 * 119.99669 * 172.52631 * 12 11 10 14 14 C 1.53002 * 115.55741 * 86.75429 * 13 12 11 15 15 F 1.39901 * 109.47470 * 37.43066 * 14 13 12 16 16 F 1.39901 * 109.46770 * 157.43021 * 14 13 12 17 17 C 1.52996 * 117.50392 * 301.05685 * 13 12 11 18 18 C 1.52998 * 60.03493 * 252.52584 * 17 13 12 19 19 C 1.39601 * 120.31656 * 0.27013 * 11 10 9 20 20 C 1.38065 * 120.54955 * 359.45211 * 19 11 10 21 21 C 1.38737 * 120.21821 * 0.54780 * 20 19 11 22 22 N 1.38860 * 120.15865 * 179.74781 * 21 20 19 23 23 H 0.96999 * 119.99691 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.11384 * 0.02562 * 10 9 7 25 25 H 0.97000 * 119.99791 * 352.53503 * 12 11 10 26 26 H 1.09003 * 109.47044 * 277.42234 * 14 13 12 27 27 H 1.08994 * 117.49845 * 145.02120 * 17 13 12 28 28 H 1.08999 * 117.49476 * 0.03345 * 17 13 12 29 29 H 1.08998 * 117.49847 * 107.47587 * 18 17 13 30 30 H 1.08998 * 117.49921 * 252.47764 * 18 17 13 31 31 H 1.08003 * 119.72772 * 179.72579 * 19 11 10 32 32 H 1.08000 * 119.89081 * 180.27617 * 20 19 11 33 33 H 0.97001 * 119.99584 * 185.24718 * 22 21 20 34 34 H 0.97001 * 120.00239 * 5.24859 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.4613 2.0633 -1.3996 5 1 1.4556 2.6440 0.7291 6 1 3.5550 1.4317 0.6705 7 6 2.0084 -1.2115 -0.0005 8 1 1.5113 -2.1221 0.2999 9 6 3.3624 -1.2439 -0.3933 10 6 3.8511 -0.3158 -1.3306 11 6 5.1779 -0.3570 -1.7081 12 7 5.6652 0.5647 -2.6403 13 6 7.1014 0.6322 -2.9216 14 6 7.6087 -0.3280 -3.9994 15 9 6.6554 -0.4315 -5.0181 16 9 8.8078 0.1589 -4.5306 17 6 8.0372 0.9379 -1.7505 18 6 7.7779 2.0015 -2.8193 19 6 6.0345 -1.3183 -1.1686 20 6 5.5703 -2.2319 -0.2435 21 6 4.2406 -2.2109 0.1520 22 7 3.7738 -3.1338 1.0787 23 1 -0.4850 0.8401 0.0004 24 1 3.1903 0.4265 -1.7534 25 1 5.0523 1.1593 -3.1004 26 1 7.7788 -1.3108 -3.5596 27 1 9.0142 0.4549 -1.7477 28 1 7.5843 1.0882 -0.7705 29 1 7.1542 2.8515 -2.5425 30 1 8.5846 2.2185 -3.5194 31 1 7.0701 -1.3447 -1.4741 32 1 6.2433 -2.9682 0.1704 33 1 2.8292 -3.1667 1.2967 34 1 4.3923 -3.7454 1.5079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697349491.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:17 Heat of formation + Delta-G solvation = -50.219217 kcal Electronic energy + Delta-G solvation = -20509.939930 eV Core-core repulsion = 17078.712060 eV Total energy + Delta-G solvation = -3431.227869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.82187 -46.82282 -38.78475 -37.32319 -34.00541 -33.44939 -31.10320 -30.29593 -27.25672 -26.13337 -24.88440 -22.59445 -21.56807 -20.79644 -19.47129 -17.67719 -17.21253 -16.96763 -16.78539 -16.26446 -15.85371 -15.19642 -14.86253 -14.46195 -13.84013 -13.63978 -13.22180 -13.15489 -12.87771 -12.68229 -12.45292 -12.09894 -11.68344 -11.63083 -11.50156 -11.37751 -10.99675 -10.74395 -10.56826 -10.11301 -10.02640 -9.80783 -9.56715 -9.05796 -8.11980 -7.58570 -6.86443 -5.94718 -4.25028 2.69267 2.94107 3.16482 3.29796 3.38287 3.49768 3.59457 4.03555 4.05750 4.34632 4.55716 4.67666 4.76129 5.20324 5.23091 5.35916 5.48377 5.56076 5.60815 5.87757 6.06340 6.14084 6.30325 6.68559 6.72988 7.07909 7.20405 7.31746 7.46572 7.64950 7.89606 8.22301 8.33893 8.49994 8.55469 8.82869 9.00870 9.07923 10.16836 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.006502 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.107283 B = 4305.117475 C = 4880.248254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.084 3.916 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.249 1.249 7 C -0.449 4.449 8 H 0.087 0.913 9 C 0.081 3.919 10 C -0.272 4.272 11 C 0.194 3.806 12 N -0.719 5.719 13 C 0.056 3.944 14 C 0.286 3.714 15 F -0.197 7.197 16 F -0.208 7.208 17 C -0.149 4.149 18 C -0.167 4.167 19 C -0.251 4.251 20 C -0.146 4.146 21 C 0.103 3.897 22 N -0.885 5.885 23 H 0.282 0.718 24 H 0.102 0.898 25 H 0.397 0.603 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.393 0.607 34 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.718 1.777 -3.040 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.133 4.133 3 Si 0.747 3.253 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.172 1.172 7 C -0.479 4.479 8 H 0.105 0.895 9 C 0.075 3.925 10 C -0.296 4.296 11 C 0.097 3.903 12 N -0.353 5.353 13 C -0.036 4.036 14 C 0.230 3.770 15 F -0.178 7.178 16 F -0.189 7.189 17 C -0.187 4.187 18 C -0.205 4.205 19 C -0.275 4.275 20 C -0.170 4.170 21 C 0.001 3.999 22 N -0.427 5.427 23 H 0.092 0.908 24 H 0.120 0.880 25 H 0.232 0.768 26 H 0.132 0.868 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.222 0.778 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 12.582 1.881 -3.080 13.089 hybrid contribution -0.164 0.742 -0.135 0.772 sum 12.417 2.623 -3.215 13.092 Atomic orbital electron populations 1.69741 1.07996 1.29915 1.36679 1.26064 0.94620 1.01527 0.91076 0.86216 0.80645 0.79787 0.78626 1.20064 1.22611 1.17236 1.19083 0.93363 0.95800 1.39629 0.89533 1.17125 0.92672 0.91060 0.91598 1.20265 0.93891 1.08048 1.07395 1.17322 0.92613 0.89778 0.90615 1.43520 1.01996 1.42637 1.47124 1.21042 0.85042 0.98610 0.98933 1.21688 0.73075 0.99059 0.83149 1.92970 1.65013 1.97223 1.62608 1.92929 1.47489 1.90324 1.88168 1.23290 0.99237 1.01173 0.94988 1.23414 1.02595 0.92176 1.02306 1.19635 0.97535 1.01982 1.08339 1.19800 0.93777 1.01351 1.02109 1.17769 0.92191 0.95056 0.94883 1.41876 1.10645 1.40966 1.49219 0.90780 0.88021 0.76764 0.86824 0.87973 0.87038 0.87893 0.87476 0.89111 0.89053 0.77829 0.79730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.89 13.93 55.55 0.77 -21.12 16 2 C 0.08 2.21 5.40 -17.33 -0.09 2.12 16 3 Si 0.92 21.27 24.58 -169.99 -4.18 17.09 16 4 H -0.27 -6.17 6.50 56.52 0.37 -5.80 16 5 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.25 -5.94 7.05 56.52 0.40 -5.54 16 7 C -0.45 -11.86 8.96 -37.91 -0.34 -12.20 16 8 H 0.09 2.35 6.94 -52.48 -0.36 1.99 16 9 C 0.08 2.02 5.11 -106.66 -0.55 1.47 16 10 C -0.27 -6.48 7.12 -38.75 -0.28 -6.75 16 11 C 0.19 4.09 6.53 -83.77 -0.55 3.54 16 12 N -0.72 -12.80 5.35 -45.96 -0.25 -13.04 16 13 C 0.06 0.81 1.70 -131.78 -0.22 0.59 16 14 C 0.29 4.01 5.52 37.16 0.21 4.22 16 15 F -0.20 -3.22 17.08 2.25 0.04 -3.18 16 16 F -0.21 -2.75 15.93 2.25 0.04 -2.71 16 17 C -0.15 -1.90 8.39 -26.73 -0.22 -2.12 16 18 C -0.17 -2.03 9.85 -26.69 -0.26 -2.29 16 19 C -0.25 -5.02 8.88 -39.14 -0.35 -5.36 16 20 C -0.15 -2.99 9.87 -39.46 -0.39 -3.38 16 21 C 0.10 2.30 6.79 -83.23 -0.56 1.74 16 22 N -0.88 -16.99 8.97 32.75 0.29 -16.70 16 23 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 24 H 0.10 2.47 4.64 -52.48 -0.24 2.23 16 25 H 0.40 6.90 8.84 -40.82 -0.36 6.54 16 26 H 0.11 1.45 7.50 -51.93 -0.39 1.06 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.11 1.16 7.26 -51.93 -0.38 0.78 16 31 H 0.09 1.58 5.50 -52.48 -0.29 1.29 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.39 7.65 7.10 -40.82 -0.29 7.36 16 34 H 0.38 5.99 8.84 -40.82 -0.36 5.63 16 LS Contribution 287.99 15.07 4.34 4.34 Total: -1.00 -28.02 287.99 -6.09 -34.11 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -3.54 Total: 19.64 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.61 Total: -18.43 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.82 Total: -50.86 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.07 Total: -5.90 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.18 Total: 17.09 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.02 -6.09 -34.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697349491.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.111 kcal (2) G-P(sol) polarization free energy of solvation -28.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds