Wall clock time and date at job start Mon Mar 30 2020 06:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86791 * 120.00312 * 2 1 4 4 H 1.48499 * 109.47360 * 271.38664 * 3 2 1 5 5 H 1.48502 * 109.47393 * 31.38482 * 3 2 1 6 6 H 1.48498 * 109.47283 * 151.38714 * 3 2 1 7 7 C 1.39888 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00158 * 341.23621 * 7 2 1 9 9 C 1.41026 * 119.99870 * 161.24064 * 7 2 1 10 10 C 1.40664 * 120.26713 * 330.26248 * 9 7 2 11 11 C 1.38007 * 119.77364 * 180.02562 * 10 9 7 12 12 N 1.39853 * 119.84353 * 179.97438 * 11 10 9 13 13 C 1.46500 * 119.99669 * 172.52631 * 12 11 10 14 14 C 1.53002 * 115.55741 * 86.75429 * 13 12 11 15 15 F 1.39901 * 109.47470 * 37.43066 * 14 13 12 16 16 F 1.39901 * 109.46770 * 157.43021 * 14 13 12 17 17 C 1.52996 * 117.50392 * 301.05685 * 13 12 11 18 18 C 1.52998 * 60.03493 * 252.52584 * 17 13 12 19 19 C 1.39601 * 120.31656 * 0.27013 * 11 10 9 20 20 C 1.38065 * 120.54955 * 359.45211 * 19 11 10 21 21 C 1.38737 * 120.21821 * 0.54780 * 20 19 11 22 22 N 1.38860 * 120.15865 * 179.74781 * 21 20 19 23 23 H 0.96999 * 119.99691 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.11384 * 0.02562 * 10 9 7 25 25 H 0.97000 * 119.99791 * 352.53503 * 12 11 10 26 26 H 1.09003 * 109.47044 * 277.42234 * 14 13 12 27 27 H 1.08994 * 117.49845 * 145.02120 * 17 13 12 28 28 H 1.08999 * 117.49476 * 0.03345 * 17 13 12 29 29 H 1.08998 * 117.49847 * 107.47587 * 18 17 13 30 30 H 1.08998 * 117.49921 * 252.47764 * 18 17 13 31 31 H 1.08003 * 119.72772 * 179.72579 * 19 11 10 32 32 H 1.08000 * 119.89081 * 180.27617 * 20 19 11 33 33 H 0.97001 * 119.99584 * 185.24718 * 22 21 20 34 34 H 0.97001 * 120.00239 * 5.24859 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.4613 2.0633 -1.3996 5 1 1.4556 2.6440 0.7291 6 1 3.5550 1.4317 0.6705 7 6 2.0084 -1.2115 -0.0005 8 1 1.5113 -2.1221 0.2999 9 6 3.3624 -1.2439 -0.3933 10 6 3.8511 -0.3158 -1.3306 11 6 5.1779 -0.3570 -1.7081 12 7 5.6652 0.5647 -2.6403 13 6 7.1014 0.6322 -2.9216 14 6 7.6087 -0.3280 -3.9994 15 9 6.6554 -0.4315 -5.0181 16 9 8.8078 0.1589 -4.5306 17 6 8.0372 0.9379 -1.7505 18 6 7.7779 2.0015 -2.8193 19 6 6.0345 -1.3183 -1.1686 20 6 5.5703 -2.2319 -0.2435 21 6 4.2406 -2.2109 0.1520 22 7 3.7738 -3.1338 1.0787 23 1 -0.4850 0.8401 0.0004 24 1 3.1903 0.4265 -1.7534 25 1 5.0523 1.1593 -3.1004 26 1 7.7788 -1.3108 -3.5596 27 1 9.0142 0.4549 -1.7477 28 1 7.5843 1.0882 -0.7705 29 1 7.1542 2.8515 -2.5425 30 1 8.5846 2.2185 -3.5194 31 1 7.0701 -1.3447 -1.4741 32 1 6.2433 -2.9682 0.1704 33 1 2.8292 -3.1667 1.2967 34 1 4.3923 -3.7454 1.5079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697349491.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:17 Heat of formation + Delta-G solvation = -68.593749 kcal Electronic energy + Delta-G solvation = -20510.736709 eV Core-core repulsion = 17078.712060 eV Total energy + Delta-G solvation = -3432.024649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.91850 -47.94320 -40.26506 -38.71075 -35.55252 -35.25903 -32.60170 -32.07896 -28.53940 -27.58379 -26.63967 -23.81336 -23.09150 -22.18846 -20.95012 -19.23286 -18.44774 -18.25198 -17.94341 -17.86099 -17.44199 -16.76246 -16.34128 -15.95799 -15.05018 -14.97835 -14.72573 -14.50905 -14.31996 -14.13906 -14.00048 -13.70889 -13.36276 -13.12385 -12.78110 -12.56484 -12.41922 -12.37504 -12.29019 -11.74741 -11.41192 -11.26661 -11.12996 -10.89034 -9.60767 -9.38569 -8.79127 -7.59122 -6.15439 0.91153 1.18537 1.28648 1.50914 1.52003 2.17992 2.35774 2.45665 2.73981 2.91839 3.29684 3.53594 3.68206 3.72525 3.78338 4.14571 4.24101 4.41321 4.52058 4.68408 4.71278 4.93856 4.94764 5.07191 5.17889 5.34956 5.46039 5.63385 5.79673 5.96466 6.15723 6.33390 6.66323 6.80321 6.94842 6.98819 7.29004 7.58181 8.29712 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.006502 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.107283 B = 4305.117475 C = 4880.248254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.047 3.953 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.474 4.474 8 H 0.062 0.938 9 C 0.050 3.950 10 C -0.282 4.282 11 C 0.189 3.811 12 N -0.720 5.720 13 C 0.029 3.971 14 C 0.288 3.712 15 F -0.214 7.214 16 F -0.201 7.201 17 C -0.140 4.140 18 C -0.151 4.151 19 C -0.232 4.232 20 C -0.144 4.144 21 C 0.089 3.911 22 N -0.878 5.878 23 H 0.287 0.713 24 H 0.089 0.911 25 H 0.396 0.604 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.390 0.610 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.321 2.011 -3.478 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.166 4.166 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.044 3.956 10 C -0.306 4.306 11 C 0.089 3.911 12 N -0.352 5.352 13 C -0.062 4.062 14 C 0.232 3.768 15 F -0.195 7.195 16 F -0.183 7.183 17 C -0.178 4.178 18 C -0.189 4.189 19 C -0.255 4.255 20 C -0.168 4.168 21 C -0.014 4.014 22 N -0.421 5.421 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.231 0.769 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.218 0.782 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 16.225 2.110 -3.525 16.737 hybrid contribution -1.018 0.587 -0.080 1.178 sum 15.207 2.697 -3.605 15.859 Atomic orbital electron populations 1.69781 1.08922 1.30654 1.39728 1.26635 0.95129 1.03738 0.91057 0.85416 0.78953 0.77219 0.78645 1.19446 1.21791 1.18431 1.19088 0.94582 0.95236 1.41615 0.92028 1.17294 0.92563 0.92871 0.92859 1.20352 0.95215 1.07592 1.07438 1.17394 0.91840 0.90678 0.91141 1.43532 1.03767 1.41716 1.46155 1.21316 0.83395 1.00918 1.00542 1.21778 0.72843 0.99650 0.82493 1.92943 1.65850 1.97305 1.63434 1.92942 1.46925 1.90345 1.88061 1.23374 0.99581 1.01107 0.93700 1.23497 1.02225 0.91135 1.02022 1.20085 0.98849 1.00166 1.06423 1.20231 0.93312 1.01744 1.01536 1.17994 0.92866 0.95066 0.95504 1.41807 1.10900 1.40680 1.48673 0.90344 0.89305 0.76908 0.85131 0.85245 0.88459 0.87866 0.85676 0.85748 0.85683 0.78238 0.77686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.32 13.93 21.82 0.30 -48.01 16 2 C 0.05 2.53 5.40 85.23 0.46 2.99 16 3 Si 0.97 45.01 24.58 68.60 1.69 46.69 16 4 H -0.27 -11.96 6.50 99.48 0.65 -11.31 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -12.34 7.05 99.48 0.70 -11.64 16 7 C -0.47 -26.12 8.96 23.35 0.21 -25.92 16 8 H 0.06 3.56 6.94 -2.91 -0.02 3.54 16 9 C 0.05 2.49 5.11 -21.18 -0.11 2.39 16 10 C -0.28 -13.36 7.12 22.81 0.16 -13.20 16 11 C 0.19 7.56 6.53 38.14 0.25 7.81 16 12 N -0.72 -23.96 5.35 -299.31 -1.60 -25.56 16 13 C 0.03 0.75 1.70 3.63 0.01 0.75 16 14 C 0.29 7.01 5.52 71.98 0.40 7.41 16 15 F -0.21 -6.49 17.08 44.97 0.77 -5.72 16 16 F -0.20 -4.53 15.93 44.97 0.72 -3.81 16 17 C -0.14 -2.95 8.39 30.59 0.26 -2.69 16 18 C -0.15 -3.09 9.85 30.62 0.30 -2.79 16 19 C -0.23 -8.39 8.88 22.56 0.20 -8.19 16 20 C -0.14 -5.41 9.87 22.35 0.22 -5.19 16 21 C 0.09 3.87 6.79 38.97 0.26 4.14 16 22 N -0.88 -33.05 8.97 -50.31 -0.45 -33.50 16 23 H 0.29 14.68 8.30 -92.71 -0.77 13.91 16 24 H 0.09 4.37 4.64 -2.91 -0.01 4.35 16 25 H 0.40 13.20 8.84 -92.71 -0.82 12.38 16 26 H 0.13 2.73 7.50 -2.39 -0.02 2.71 16 27 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.13 2.14 7.26 -2.39 -0.02 2.13 16 31 H 0.12 3.66 5.50 -2.91 -0.02 3.64 16 32 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 33 H 0.39 15.46 7.10 -92.71 -0.66 14.80 16 34 H 0.39 11.78 8.84 -92.71 -0.82 10.97 16 Total: -1.00 -61.55 287.99 2.86 -58.69 By element: Atomic # 1 Polarization: 44.88 SS G_CDS: -1.18 Total: 43.70 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 2.62 Total: -32.48 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -1.75 Total: -107.07 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 1.48 Total: -9.53 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.69 Total: 46.69 kcal Total: -61.55 2.86 -58.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697349491.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.905 kcal (2) G-P(sol) polarization free energy of solvation -61.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds