Wall clock time and date at job start Mon Mar 30 2020 07:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46736 * 89.99996 * 5 4 3 7 7 C 1.46901 * 111.00138 * 66.04685 * 6 5 4 8 8 C 1.46903 * 111.00067 * 190.00034 * 6 5 4 9 9 C 1.52995 * 109.47484 * 170.00130 * 8 6 5 10 10 C 1.52997 * 109.47333 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.47372 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00016 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99968 * 180.02562 * 11 10 9 14 14 N 1.31522 * 120.00322 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46862 * 89.99833 * 15 13 11 17 17 H 1.48497 * 109.47421 * 209.99841 * 15 13 11 18 18 H 1.48498 * 109.47209 * 330.00243 * 15 13 11 19 19 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 20 20 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 21 21 C 1.50700 * 126.03597 * 0.25055 * 20 2 1 22 22 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 23 23 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 24 24 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 25 25 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 26 26 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 27 27 H 1.09003 * 109.46972 * 59.99747 * 7 6 5 28 28 H 1.09000 * 109.47201 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.46880 * 299.99314 * 7 6 5 30 30 H 1.09009 * 109.46821 * 290.00342 * 8 6 5 31 31 H 1.09003 * 109.47247 * 49.99634 * 8 6 5 32 32 H 1.09000 * 109.47357 * 300.00203 * 9 8 6 33 33 H 1.09000 * 109.47513 * 59.99990 * 9 8 6 34 34 H 1.09005 * 109.47077 * 299.99710 * 10 9 8 35 35 H 1.09003 * 109.47228 * 59.99608 * 10 9 8 36 36 H 0.96992 * 119.99822 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.47176 * 90.00027 * 21 20 2 38 38 H 1.09000 * 109.46916 * 209.99905 * 21 20 2 39 39 H 1.08999 * 109.47044 * 329.99869 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 7 4.7962 2.5034 1.3909 7 6 5.5189 1.4252 2.0790 8 6 5.5567 3.7594 1.4364 9 6 5.6483 4.2481 2.8833 10 6 6.4409 5.5559 2.9307 11 6 6.5306 6.0377 4.3559 12 1 6.0688 5.4678 5.1486 13 6 7.2022 7.2059 4.6477 14 7 7.7650 7.8997 3.6824 15 14 7.3140 7.8027 6.4142 16 1 8.5298 7.2366 7.0519 17 1 7.3906 9.2856 6.4319 18 1 6.1105 7.3603 7.1633 19 16 3.9332 -0.6730 0.0121 20 6 2.2300 -1.1239 0.0058 21 6 1.6847 -2.5288 0.0078 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 5.3979 1.8233 -0.5034 26 1 4.0453 2.9803 -0.5122 27 1 6.4515 1.2199 1.5534 28 1 5.7383 1.7302 3.1022 29 1 4.9033 0.5258 2.0917 30 1 6.5603 3.5908 1.0456 31 1 5.0524 4.5117 0.8300 32 1 4.6448 4.4167 3.2741 33 1 6.1527 3.4959 3.4898 34 1 7.4445 5.3869 2.5401 35 1 5.9370 6.3085 2.3242 36 1 8.2371 8.7217 3.8877 37 1 1.5570 -2.8705 -1.0194 38 1 2.3811 -3.1881 0.5260 39 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697861248.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:28 Heat of formation + Delta-G solvation = 28.363252 kcal Electronic energy + Delta-G solvation = -17640.809239 eV Core-core repulsion = 14902.662443 eV Total energy + Delta-G solvation = -2738.146797 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.06493 -37.64158 -34.06299 -33.21352 -31.40131 -30.00704 -28.37889 -27.14645 -25.37542 -24.64204 -22.62991 -21.19509 -19.87867 -18.87521 -17.99351 -16.35199 -15.82589 -15.31699 -15.15326 -14.82125 -14.33742 -14.01175 -13.77460 -13.41662 -13.30241 -13.15443 -12.67058 -12.54016 -12.32074 -12.24650 -11.81496 -11.65337 -11.53487 -11.26263 -11.16526 -10.80549 -10.52713 -10.50022 -9.65752 -9.59106 -9.33976 -9.24807 -9.03592 -8.71886 -8.31330 -8.14064 -5.96825 -3.98641 0.57494 1.21872 1.63145 2.67971 3.34412 3.40490 3.44654 3.91410 4.23329 4.50008 4.69364 4.82818 4.86216 5.12130 5.14959 5.21673 5.38927 5.39417 5.42529 5.45951 5.55155 5.59862 5.65021 5.79421 5.80567 5.97076 6.09071 6.16570 6.31400 6.70490 6.74983 7.09856 7.26507 7.32136 7.71713 7.72998 7.86574 8.03825 8.47235 9.08534 9.65235 11.14697 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039198 B = 0.003056 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.144863 B = 9159.433227 C = 9290.242813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.062 3.938 3 N -0.454 5.454 4 C 0.072 3.928 5 C 0.127 3.873 6 N -0.533 5.533 7 C 0.014 3.986 8 C 0.058 3.942 9 C -0.105 4.105 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 S 0.105 5.895 20 C -0.235 4.235 21 C -0.072 4.072 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.026 0.974 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 -20.908 -10.270 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 N -0.168 5.168 4 C -0.207 4.207 5 C -0.004 4.004 6 N -0.258 5.258 7 C -0.135 4.135 8 C -0.069 4.069 9 C -0.143 4.143 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 S 0.361 5.639 20 C -0.356 4.356 21 C -0.131 4.131 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.044 0.956 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.111 -20.665 -10.061 25.110 hybrid contribution 0.085 0.324 0.546 0.641 sum -10.026 -20.341 -9.515 24.593 Atomic orbital electron populations 1.20355 0.87287 1.03326 1.02699 1.20211 0.98160 0.86250 1.02366 1.66095 1.04531 1.31189 1.15030 1.26824 0.94034 0.97232 1.02627 1.20669 0.93972 0.93913 0.91879 1.61997 1.46925 1.04364 1.12549 1.22591 0.95966 0.94304 1.00602 1.22349 0.94854 0.88990 1.00664 1.21666 1.01069 0.99295 0.92228 1.19075 0.94715 0.90730 0.97031 1.21253 1.33767 1.07236 0.93347 0.92680 1.25026 0.95624 0.96759 0.97113 1.69966 1.36063 1.15977 1.31651 0.86599 0.78421 0.77833 0.85193 1.20725 1.21243 1.19843 1.83929 1.07093 1.03819 1.69035 1.25663 0.95158 1.00888 1.13889 1.20212 1.01085 0.89133 1.02645 0.90802 0.90852 0.90471 0.92738 0.87711 0.95562 0.89964 0.92128 0.94930 0.90828 0.92475 0.93369 0.96798 0.96527 0.93054 0.90763 0.91270 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.06 36.01 0.36 -0.33 16 2 C 0.06 0.75 6.74 -84.22 -0.57 0.19 16 3 N -0.45 -6.69 10.53 -8.06 -0.08 -6.77 16 4 C 0.07 0.98 6.17 -13.45 -0.08 0.90 16 5 C 0.13 1.72 5.54 -4.97 -0.03 1.69 16 6 N -0.53 -8.42 4.75 -244.36 -1.16 -9.58 16 7 C 0.01 0.20 9.07 60.07 0.54 0.74 16 8 C 0.06 1.02 4.96 -3.82 -0.02 1.00 16 9 C -0.10 -2.21 5.08 -26.73 -0.14 -2.35 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 12 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 15 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 S 0.11 1.17 21.66 -107.50 -2.33 -1.16 16 20 C -0.24 -2.49 6.59 -35.92 -0.24 -2.72 16 21 C -0.07 -0.49 10.10 36.01 0.36 -0.13 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.49 6.71 -51.92 -0.35 0.14 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 26 H 0.10 1.41 7.93 -51.93 -0.41 0.99 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 1.24 6.30 -51.93 -0.33 0.91 16 29 H 0.06 0.80 6.05 -51.93 -0.31 0.49 16 30 H 0.03 0.56 8.12 -51.92 -0.42 0.13 16 31 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.45 6.75 -51.93 -0.35 0.10 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -32.17 330.53 -9.49 -41.66 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -6.27 Total: -5.23 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.35 Total: -14.30 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.51 Total: -42.92 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.33 Total: -1.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.17 -9.49 -41.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697861248.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.027 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds