Wall clock time and date at job start Mon Mar 30 2020 07:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46736 * 89.99996 * 5 4 3 7 7 C 1.46901 * 111.00138 * 66.04685 * 6 5 4 8 8 C 1.46903 * 111.00067 * 190.00034 * 6 5 4 9 9 C 1.52995 * 109.47484 * 170.00130 * 8 6 5 10 10 C 1.52997 * 109.47333 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.47372 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00016 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99968 * 180.02562 * 11 10 9 14 14 N 1.31522 * 120.00322 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46862 * 89.99833 * 15 13 11 17 17 H 1.48497 * 109.47421 * 209.99841 * 15 13 11 18 18 H 1.48498 * 109.47209 * 330.00243 * 15 13 11 19 19 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 20 20 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 21 21 C 1.50700 * 126.03597 * 0.25055 * 20 2 1 22 22 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 23 23 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 24 24 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 25 25 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 26 26 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 27 27 H 1.09003 * 109.46972 * 59.99747 * 7 6 5 28 28 H 1.09000 * 109.47201 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.46880 * 299.99314 * 7 6 5 30 30 H 1.09009 * 109.46821 * 290.00342 * 8 6 5 31 31 H 1.09003 * 109.47247 * 49.99634 * 8 6 5 32 32 H 1.09000 * 109.47357 * 300.00203 * 9 8 6 33 33 H 1.09000 * 109.47513 * 59.99990 * 9 8 6 34 34 H 1.09005 * 109.47077 * 299.99710 * 10 9 8 35 35 H 1.09003 * 109.47228 * 59.99608 * 10 9 8 36 36 H 0.96992 * 119.99822 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.47176 * 90.00027 * 21 20 2 38 38 H 1.09000 * 109.46916 * 209.99905 * 21 20 2 39 39 H 1.08999 * 109.47044 * 329.99869 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 7 4.7962 2.5034 1.3909 7 6 5.5189 1.4252 2.0790 8 6 5.5567 3.7594 1.4364 9 6 5.6483 4.2481 2.8833 10 6 6.4409 5.5559 2.9307 11 6 6.5306 6.0377 4.3559 12 1 6.0688 5.4678 5.1486 13 6 7.2022 7.2059 4.6477 14 7 7.7650 7.8997 3.6824 15 14 7.3140 7.8027 6.4142 16 1 8.5298 7.2366 7.0519 17 1 7.3906 9.2856 6.4319 18 1 6.1105 7.3603 7.1633 19 16 3.9332 -0.6730 0.0121 20 6 2.2300 -1.1239 0.0058 21 6 1.6847 -2.5288 0.0078 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 5.3979 1.8233 -0.5034 26 1 4.0453 2.9803 -0.5122 27 1 6.4515 1.2199 1.5534 28 1 5.7383 1.7302 3.1022 29 1 4.9033 0.5258 2.0917 30 1 6.5603 3.5908 1.0456 31 1 5.0524 4.5117 0.8300 32 1 4.6448 4.4167 3.2741 33 1 6.1527 3.4959 3.4898 34 1 7.4445 5.3869 2.5401 35 1 5.9370 6.3085 2.3242 36 1 8.2371 8.7217 3.8877 37 1 1.5570 -2.8705 -1.0194 38 1 2.3811 -3.1881 0.5260 39 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697861248.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:27 Heat of formation + Delta-G solvation = 7.912048 kcal Electronic energy + Delta-G solvation = -17641.696070 eV Core-core repulsion = 14902.662443 eV Total energy + Delta-G solvation = -2739.033627 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97035 -38.90406 -35.81126 -34.42846 -33.16835 -30.77807 -29.51568 -28.70500 -26.63832 -25.74320 -24.12283 -22.50143 -21.55134 -19.75496 -18.86159 -18.48319 -17.06901 -16.60183 -16.36690 -16.25142 -15.72167 -15.18169 -15.00468 -14.40691 -14.15736 -14.10503 -13.78257 -13.68574 -13.59394 -13.33211 -13.14612 -12.95932 -12.79529 -12.69652 -12.59873 -12.40499 -12.24900 -11.97912 -11.44564 -11.37346 -11.14595 -10.56469 -10.54263 -10.12675 -9.60968 -9.31566 -8.19961 -6.30701 -0.31504 0.36405 0.74956 1.39795 1.41340 1.52717 1.76311 2.41134 2.90582 3.13143 3.15818 3.91170 4.02530 4.05950 4.15653 4.21346 4.28028 4.41582 4.53689 4.59737 4.64915 4.68418 4.70542 4.79995 4.88553 4.94149 4.99495 5.03999 5.05586 5.06874 5.24669 5.43309 5.52080 5.74261 5.86292 5.96108 6.01570 6.27426 6.83968 6.85900 7.38351 8.91990 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039198 B = 0.003056 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.144863 B = 9159.433227 C = 9290.242813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.032 3.968 3 N -0.487 5.487 4 C 0.042 3.958 5 C 0.129 3.871 6 N -0.547 5.547 7 C 0.016 3.984 8 C 0.071 3.929 9 C -0.089 4.089 10 C 0.027 3.973 11 C -0.543 4.543 12 H 0.057 0.943 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.265 1.265 19 S 0.135 5.865 20 C -0.225 4.225 21 C -0.074 4.074 22 H 0.084 0.916 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.053 0.947 34 H -0.006 1.006 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 -22.985 -9.813 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.202 5.202 4 C -0.236 4.236 5 C -0.002 4.002 6 N -0.272 5.272 7 C -0.132 4.132 8 C -0.057 4.057 9 C -0.127 4.127 10 C -0.011 4.011 11 C -0.581 4.581 12 H 0.075 0.925 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.189 1.189 19 S 0.390 5.610 20 C -0.347 4.347 21 C -0.133 4.133 22 H 0.103 0.897 23 H 0.116 0.884 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.690 -22.758 -9.610 26.917 hybrid contribution 0.233 0.883 0.352 0.979 sum -10.457 -21.875 -9.258 25.953 Atomic orbital electron populations 1.20433 0.85489 1.03851 1.03590 1.20681 0.99537 0.86160 1.03557 1.66093 1.05386 1.33134 1.15578 1.26723 0.93927 0.98528 1.04429 1.20639 0.94863 0.94226 0.90437 1.61869 1.46806 1.04054 1.14466 1.22580 0.96670 0.94083 0.99884 1.22048 0.95542 0.90173 0.97902 1.21400 0.99404 0.96973 0.94957 1.18961 0.94065 0.92546 0.95505 1.21688 1.34034 1.07835 0.94562 0.92456 1.25973 0.95026 0.96865 1.01949 1.70092 1.36692 1.16474 1.34095 0.85455 0.78912 0.77358 0.79381 1.19614 1.20631 1.18933 1.83727 1.07478 1.01601 1.68186 1.26204 0.94714 1.02263 1.11470 1.20406 1.01932 0.86840 1.04081 0.89708 0.88440 0.91799 0.90901 0.88354 0.94207 0.91133 0.91136 0.94378 0.91078 0.93521 0.92870 0.98729 0.98948 0.92739 0.89097 0.90258 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.06 71.24 0.72 -0.50 16 2 C 0.03 0.73 6.74 41.52 0.28 1.01 16 3 N -0.49 -14.19 10.53 -179.40 -1.89 -16.08 16 4 C 0.04 1.12 6.17 88.52 0.55 1.67 16 5 C 0.13 3.45 5.54 85.56 0.47 3.92 16 6 N -0.55 -17.09 4.75 -927.03 -4.41 -21.50 16 7 C 0.02 0.44 9.07 127.69 1.16 1.60 16 8 C 0.07 2.50 4.96 86.30 0.43 2.93 16 9 C -0.09 -3.85 5.08 30.59 0.16 -3.69 16 10 C 0.03 1.45 4.97 29.85 0.15 1.60 16 11 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 13 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 14 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 15 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 S 0.13 2.74 21.66 -56.49 -1.22 1.52 16 20 C -0.23 -4.27 6.59 24.64 0.16 -4.11 16 21 C -0.07 -0.77 10.10 71.24 0.72 -0.05 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.10 1.06 6.71 -2.38 -0.02 1.04 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 26 H 0.10 2.68 7.93 -2.39 -0.02 2.66 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 2.09 6.30 -2.39 -0.02 2.07 16 29 H 0.07 1.78 6.05 -2.39 -0.01 1.77 16 30 H 0.04 1.30 8.12 -2.38 -0.02 1.28 16 31 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 2.22 6.47 -2.39 -0.02 2.20 16 34 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.72 6.75 -2.39 -0.02 0.71 16 Total: -1.00 -69.64 330.53 1.30 -68.35 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.02 Total: 4.69 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 5.49 Total: -26.76 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -6.01 Total: -94.93 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.22 Total: 1.52 kcal Total: -69.64 1.30 -68.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697861248.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.260 kcal (2) G-P(sol) polarization free energy of solvation -69.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds