Wall clock time and date at job start Mon Mar 30 2020 07:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31777 * 122.74851 * 2 1 4 4 C 1.29025 * 117.12273 * 180.02562 * 3 2 1 5 5 C 1.50706 * 124.91544 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.46929 * 90.00232 * 5 4 3 7 7 C 1.46898 * 110.99888 * 66.04676 * 6 5 4 8 8 C 1.46902 * 110.99573 * 190.00042 * 6 5 4 9 9 H 1.09005 * 109.47428 * 55.00152 * 8 6 5 10 10 C 1.52998 * 109.47449 * 294.99873 * 8 6 5 11 11 C 1.53001 * 109.46897 * 174.99888 * 8 6 5 12 12 C 1.50700 * 109.47341 * 295.00242 * 11 8 6 13 13 H 1.08000 * 119.99724 * 359.97438 * 12 11 8 14 14 C 1.37880 * 120.00362 * 179.97438 * 12 11 8 15 15 N 1.31516 * 119.99527 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00008 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47358 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47195 * 120.00407 * 16 14 12 19 19 H 1.48513 * 109.47006 * 239.99958 * 16 14 12 20 20 S 1.70976 * 110.16838 * 0.22854 * 4 3 2 21 21 C 1.33642 * 122.75119 * 180.02562 * 2 1 3 22 22 C 1.50704 * 126.03414 * 359.97438 * 21 2 1 23 23 H 1.09007 * 109.46754 * 89.97824 * 1 2 3 24 24 H 1.08998 * 109.47476 * 209.97744 * 1 2 3 25 25 H 1.09000 * 109.47445 * 329.97872 * 1 2 3 26 26 H 1.08998 * 109.46946 * 330.00459 * 5 4 3 27 27 H 1.09000 * 109.47319 * 210.00258 * 5 4 3 28 28 H 1.08997 * 109.47334 * 60.00212 * 7 6 5 29 29 H 1.09000 * 109.46674 * 180.02562 * 7 6 5 30 30 H 1.08995 * 109.47296 * 299.99911 * 7 6 5 31 31 H 1.09005 * 109.47033 * 300.00521 * 10 8 6 32 32 H 1.08995 * 109.47107 * 59.99993 * 10 8 6 33 33 H 1.08999 * 109.47381 * 180.02562 * 10 8 6 34 34 H 1.09000 * 109.47042 * 55.00014 * 11 8 6 35 35 H 1.09001 * 109.47470 * 174.99940 * 11 8 6 36 36 H 0.96998 * 119.99505 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.46740 * 89.99955 * 22 21 2 38 38 H 1.08997 * 109.46971 * 209.99623 * 22 21 2 39 39 H 1.09001 * 109.47277 * 329.99585 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9818 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8024 2.4994 1.3837 7 6 5.5280 1.4193 2.0654 8 6 5.5632 3.7553 1.4292 9 1 5.0119 4.5335 0.9013 10 6 6.9242 3.5517 0.7607 11 6 5.7683 4.1747 2.8862 12 6 4.4339 4.4940 3.5097 13 1 3.5301 4.4069 2.9250 14 6 4.3670 4.8974 4.8265 15 7 5.4678 5.0039 5.5382 16 14 2.7131 5.2938 5.5990 17 1 1.6376 5.0981 4.5939 18 1 2.4791 4.3939 6.7568 19 1 2.7079 6.7054 6.0604 20 16 3.9332 -0.6731 -0.0075 21 6 2.2300 -1.1240 -0.0005 22 6 1.6847 -2.5289 -0.0006 23 1 -0.3633 0.0004 -1.0278 24 1 -0.3634 -0.8901 0.5135 25 1 -0.3634 0.8898 0.5142 26 1 4.0431 2.9816 -0.5149 27 1 5.3958 1.8247 -0.5153 28 1 6.4583 1.2155 1.5353 29 1 5.7511 1.7211 3.0888 30 1 4.9125 0.5198 2.0783 31 1 7.4755 2.7735 1.2886 32 1 6.7781 3.2528 -0.2772 33 1 7.4889 4.4834 0.7949 34 1 6.2404 3.3604 3.4357 35 1 6.4073 5.0570 2.9239 36 1 5.4208 5.2880 6.4645 37 1 1.5528 -2.8673 -1.0283 38 1 2.3831 -3.1897 0.5128 39 1 0.7237 -2.5457 0.5137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697872305.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:49 Heat of formation + Delta-G solvation = 39.330159 kcal Electronic energy + Delta-G solvation = -18542.437009 eV Core-core repulsion = 15804.765773 eV Total energy + Delta-G solvation = -2737.671236 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83294 -37.89932 -33.74523 -32.65570 -30.88771 -29.68347 -27.95760 -27.24574 -25.35485 -24.63464 -23.10003 -21.59152 -18.80787 -18.61740 -17.77174 -16.16724 -15.88181 -15.18580 -14.73294 -14.36115 -14.22962 -13.78442 -13.36558 -13.16355 -13.08842 -12.92497 -12.42538 -12.37049 -12.14208 -12.06826 -11.69278 -11.57523 -11.35821 -11.06986 -10.94845 -10.76557 -10.61628 -10.37883 -9.96942 -9.40491 -9.18930 -9.01363 -8.93872 -8.47283 -8.23335 -7.55540 -5.86799 -3.84081 0.82129 1.46035 1.86983 2.93430 3.40908 3.48266 3.56154 4.19665 4.59375 4.65797 4.89574 5.02413 5.12432 5.29729 5.38993 5.42869 5.50958 5.58119 5.68443 5.71643 5.74631 5.82663 5.89027 5.92056 5.98701 6.03017 6.11697 6.38500 6.43464 6.61452 6.71722 6.93930 7.48745 7.61186 7.85856 7.96349 7.99460 8.14754 8.59627 9.23009 9.78102 11.25190 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.005626 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.261864 B = 4975.592085 C = 5916.988021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.455 5.455 4 C 0.082 3.918 5 C 0.125 3.875 6 N -0.504 5.504 7 C 0.016 3.984 8 C 0.088 3.912 9 H 0.074 0.926 10 C -0.186 4.186 11 C 0.028 3.972 12 C -0.490 4.490 13 H 0.062 0.938 14 C 0.051 3.949 15 N -0.905 5.905 16 Si 0.888 3.112 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.287 1.287 20 S 0.098 5.902 21 C -0.240 4.240 22 C -0.070 4.070 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.019 0.981 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.256 0.744 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 -13.654 -13.280 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 N -0.169 5.169 4 C -0.198 4.198 5 C -0.007 4.007 6 N -0.228 5.228 7 C -0.132 4.132 8 C -0.020 4.020 9 H 0.092 0.908 10 C -0.245 4.245 11 C -0.009 4.009 12 C -0.528 4.528 13 H 0.080 0.920 14 C -0.148 4.148 15 N -0.546 5.546 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.214 1.214 20 S 0.354 5.646 21 C -0.361 4.361 22 C -0.129 4.129 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.346 -13.523 -12.873 18.968 hybrid contribution -0.924 0.115 0.221 0.957 sum -4.270 -13.408 -12.652 18.923 Atomic orbital electron populations 1.20344 0.87488 1.03309 1.02489 1.20194 0.98081 0.86329 1.02185 1.66093 1.04597 1.31010 1.15204 1.26914 0.94007 0.97103 1.01754 1.20701 0.93435 0.93497 0.93069 1.62077 1.46186 1.03685 1.10856 1.22564 0.95313 0.94030 1.01291 1.21985 0.89613 0.89514 1.00840 0.90803 1.22553 1.00459 1.02175 0.99351 1.19252 0.97537 0.96380 0.87697 1.21241 0.93330 1.42398 0.95841 0.91953 1.24991 0.96049 0.96292 0.97513 1.69974 1.26722 1.49218 1.08661 0.86589 0.84967 0.77578 0.79224 1.19687 1.21374 1.21378 1.83843 1.07163 1.04281 1.69323 1.25601 0.95173 1.00748 1.14531 1.20182 1.01009 0.89276 1.02406 0.90950 0.90952 0.90474 0.88227 0.93286 0.96269 0.89192 0.92813 0.92733 0.94100 0.92203 0.96059 0.96080 0.93414 0.90975 0.91384 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.06 36.01 0.36 -0.51 16 2 C 0.06 0.94 6.74 -84.23 -0.57 0.38 16 3 N -0.46 -8.01 10.53 -8.05 -0.08 -8.09 16 4 C 0.08 1.34 6.16 -13.45 -0.08 1.26 16 5 C 0.12 2.03 4.98 -4.97 -0.02 2.01 16 6 N -0.50 -9.84 4.46 -236.33 -1.05 -10.90 16 7 C 0.02 0.30 8.47 60.06 0.51 0.81 16 8 C 0.09 1.78 2.29 -67.71 -0.16 1.63 16 9 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 10 C -0.19 -3.10 8.50 37.16 0.32 -2.78 16 11 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 12 C -0.49 -13.93 8.84 -34.44 -0.30 -14.23 16 13 H 0.06 1.81 7.74 -52.49 -0.41 1.41 16 14 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 15 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 16 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 17 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 S 0.10 1.33 21.68 -107.50 -2.33 -1.01 16 21 C -0.24 -3.10 6.59 -35.92 -0.24 -3.34 16 22 C -0.07 -0.62 10.10 36.01 0.36 -0.26 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.65 6.72 -51.93 -0.35 0.30 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.10 1.62 8.00 -51.93 -0.42 1.20 16 27 H 0.05 0.70 6.94 -51.93 -0.36 0.34 16 28 H 0.02 0.31 6.51 -51.93 -0.34 -0.03 16 29 H 0.09 1.89 6.03 -51.93 -0.31 1.57 16 30 H 0.05 0.93 6.07 -51.93 -0.32 0.62 16 31 H 0.05 0.90 6.48 -51.93 -0.34 0.56 16 32 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.57 6.10 -51.93 -0.32 0.25 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.60 6.76 -51.93 -0.35 0.25 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -32.03 322.56 -8.87 -40.90 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.94 Total: -3.60 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -0.04 Total: -13.06 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.40 Total: -45.70 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.33 Total: -1.01 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.03 -8.87 -40.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697872305.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.232 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds